Metagenome / Metatranscriptome Family F088847

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088847
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	49 residues
Representative Sequence	MFTKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN
Number of Associated Samples	73
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.48 %
% of genes near scaffold ends (potentially truncated)	31.19 %
% of genes from short scaffolds (< 2000 bps)	88.99 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.716 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (42.202 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13545	HTH_Crp_2	6.48
PF00027	cNMP_binding	3.70
PF13185	GAF_2	3.70
PF03466	LysR_substrate	0.93
PF13442	Cytochrome_CBB3	0.93
PF00082	Peptidase_S8	0.93
PF02735	Ku	0.93
PF13229	Beta_helix	0.93
PF02955	GSH-S_ATP	0.93
PF13406	SLT_2	0.93
PF00144	Beta-lactamase	0.93
PF00563	EAL	0.93
PF02826	2-Hacid_dh_C	0.93
PF03544	TonB_C	0.93
PF00535	Glycos_transf_2	0.93
PF01738	DLH	0.93
PF10115	HlyU	0.93
PF04386	SspB	0.93
PF00903	Glyoxalase	0.93
PF00816	Histone_HNS	0.93
PF00775	Dioxygenase_C	0.93
PF07578	LAB_N	0.93
PF03401	TctC	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0189	Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily	Translation, ribosomal structure and biogenesis [J]	1.85
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.93
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.93
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.93
COG2916	DNA-binding protein H-NS	Transcription [K]	0.93
COG2969	Stringent starvation protein B, binds SsrA peptide	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.93
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3952	Uncharacterized N-terminal domain of lipid-A-disaccharide synthase	General function prediction only [R]	0.93
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.93
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
All Organisms	root	All Organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
cellular organisms	root	All Organisms → cellular organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.26 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.92 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Filomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
Candidatus Filomicrobium marinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Bradyrhizobium sp. AUGA SZCCT0182	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	0.92 %
Candidatus Filomicrobium marinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10015181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5116	Open in IMG/M
3300001686\|C688J18823_10085025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2195	Open in IMG/M
3300002568\|C688J35102_119451667	Not Available	697	Open in IMG/M
3300002568\|C688J35102_120827632	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300004114\|Ga0062593_100158819	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300004114\|Ga0062593_100577968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065	Open in IMG/M
3300004153\|Ga0063455_101559307	Not Available	518	Open in IMG/M
3300004156\|Ga0062589_101272195	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300004463\|Ga0063356_101119715	Not Available	1136	Open in IMG/M
3300004479\|Ga0062595_100600243	Not Available	857	Open in IMG/M
3300005167\|Ga0066672_10422917	Not Available	871	Open in IMG/M
3300005184\|Ga0066671_10123796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1470	Open in IMG/M
3300005187\|Ga0066675_11183154	Not Available	568	Open in IMG/M
3300005338\|Ga0068868_102156652	Not Available	530	Open in IMG/M
3300005454\|Ga0066687_10113837	Not Available	1384	Open in IMG/M
3300005560\|Ga0066670_10324177	Not Available	938	Open in IMG/M
3300005560\|Ga0066670_10505892	Not Available	742	Open in IMG/M
3300005587\|Ga0066654_10349735	Not Available	803	Open in IMG/M
3300005587\|Ga0066654_10594810	Not Available	612	Open in IMG/M
3300005598\|Ga0066706_10571335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	898	Open in IMG/M
3300006034\|Ga0066656_10454671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300006046\|Ga0066652_100152673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	1938	Open in IMG/M
3300006580\|Ga0074049_10239081	Not Available	526	Open in IMG/M
3300006800\|Ga0066660_10523662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300006876\|Ga0079217_11694815	Not Available	508	Open in IMG/M
3300009174\|Ga0105241_11699311	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300009553\|Ga0105249_10563388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191	Open in IMG/M
3300009789\|Ga0126307_10485430	Not Available	997	Open in IMG/M
3300009789\|Ga0126307_11474987	Not Available	552	Open in IMG/M
3300009789\|Ga0126307_11476685	Not Available	551	Open in IMG/M
3300009840\|Ga0126313_10702308	Not Available	819	Open in IMG/M
3300009840\|Ga0126313_11078083	Not Available	660	Open in IMG/M
3300010037\|Ga0126304_10880995	Not Available	608	Open in IMG/M
3300010038\|Ga0126315_11184655	Not Available	519	Open in IMG/M
3300010039\|Ga0126309_11309003	Not Available	502	Open in IMG/M
3300010040\|Ga0126308_10277653	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300010040\|Ga0126308_10849759	Not Available	634	Open in IMG/M
3300010041\|Ga0126312_11177844	Not Available	564	Open in IMG/M
3300010044\|Ga0126310_10077905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1941	Open in IMG/M
3300010044\|Ga0126310_10440002	Not Available	938	Open in IMG/M
3300010044\|Ga0126310_10474862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300012208\|Ga0137376_10399590	All Organisms → cellular organisms → Bacteria → Proteobacteria	1194	Open in IMG/M
3300012208\|Ga0137376_11361427	Not Available	600	Open in IMG/M
3300012211\|Ga0137377_11337461	Not Available	646	Open in IMG/M
3300012212\|Ga0150985_100134411	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300012212\|Ga0150985_102250298	Not Available	551	Open in IMG/M
3300012212\|Ga0150985_103785257	Not Available	817	Open in IMG/M
3300012212\|Ga0150985_104063072	Not Available	507	Open in IMG/M
3300012212\|Ga0150985_105004897	Not Available	505	Open in IMG/M
3300012212\|Ga0150985_105450341	Not Available	568	Open in IMG/M
3300012212\|Ga0150985_106695786	Not Available	630	Open in IMG/M
3300012212\|Ga0150985_123230891	Not Available	680	Open in IMG/M
3300012469\|Ga0150984_110246668	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300012469\|Ga0150984_110511986	Not Available	897	Open in IMG/M
3300012469\|Ga0150984_114370620	Not Available	1192	Open in IMG/M
3300012469\|Ga0150984_120230355	Not Available	552	Open in IMG/M
3300012469\|Ga0150984_120623617	Not Available	507	Open in IMG/M
3300012910\|Ga0157308_10210792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	662	Open in IMG/M
3300012922\|Ga0137394_11384620	Not Available	564	Open in IMG/M
3300012960\|Ga0164301_11245502	Not Available	600	Open in IMG/M
3300012961\|Ga0164302_11434661	Not Available	565	Open in IMG/M
3300012986\|Ga0164304_11146410	Not Available	625	Open in IMG/M
3300013306\|Ga0163162_11879479	Not Available	685	Open in IMG/M
3300014166\|Ga0134079_10342191	Not Available	678	Open in IMG/M
3300015069\|Ga0167633_101838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4856	Open in IMG/M
3300015357\|Ga0134072_10160809	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300015371\|Ga0132258_12054537	Not Available	1437	Open in IMG/M
3300015372\|Ga0132256_103594007	Not Available	521	Open in IMG/M
3300018000\|Ga0184604_10205672	Not Available	676	Open in IMG/M
3300018066\|Ga0184617_1090832	Not Available	841	Open in IMG/M
3300018429\|Ga0190272_12061574	Not Available	606	Open in IMG/M
3300018429\|Ga0190272_12976186	Not Available	525	Open in IMG/M
3300018431\|Ga0066655_10524941	Not Available	787	Open in IMG/M
3300018431\|Ga0066655_10585134	Not Available	750	Open in IMG/M
3300018432\|Ga0190275_10111646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum	2446	Open in IMG/M
3300018433\|Ga0066667_10589947	Not Available	926	Open in IMG/M
3300018465\|Ga0190269_12052695	Not Available	500	Open in IMG/M
3300018468\|Ga0066662_10040253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2882	Open in IMG/M
3300018468\|Ga0066662_10113646	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300018468\|Ga0066662_10346458	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300018468\|Ga0066662_10657912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	992	Open in IMG/M
3300018468\|Ga0066662_10952953	Not Available	846	Open in IMG/M
3300018468\|Ga0066662_11457642	Not Available	711	Open in IMG/M
3300018468\|Ga0066662_11641836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300018468\|Ga0066662_12633566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300018482\|Ga0066669_10985963	Not Available	760	Open in IMG/M
3300018920\|Ga0190273_10943332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300019361\|Ga0173482_10000296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8595	Open in IMG/M
3300019361\|Ga0173482_10012481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2230	Open in IMG/M
3300020060\|Ga0193717_1006695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5946	Open in IMG/M
3300020060\|Ga0193717_1020930	Not Available	2781	Open in IMG/M
3300020060\|Ga0193717_1020930	Not Available	2781	Open in IMG/M
3300020061\|Ga0193716_1045291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2076	Open in IMG/M
3300020061\|Ga0193716_1177755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300021445\|Ga0182009_10694988	Not Available	550	Open in IMG/M
3300022880\|Ga0247792_1030053	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300023067\|Ga0247743_1023816	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M
3300025933\|Ga0207706_10057746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3418	Open in IMG/M
3300025938\|Ga0207704_11700818	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300025961\|Ga0207712_10380993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300025981\|Ga0207640_10174637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1605	Open in IMG/M
3300026550\|Ga0209474_10776886	Not Available	501	Open in IMG/M
3300027886\|Ga0209486_10319489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	919	Open in IMG/M
3300028379\|Ga0268266_11704015	Not Available	605	Open in IMG/M
3300028380\|Ga0268265_12417721	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300028536\|Ga0137415_11466205	Not Available	507	Open in IMG/M
3300031548\|Ga0307408_101394217	Not Available	660	Open in IMG/M
3300031716\|Ga0310813_11224193	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300034194\|Ga0370499_0084888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.23%
Host-Associated	Host-Associated	24.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.39%
Plants	Host-Associated → Plants	24.77%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.01%
Sediment	Environmental → Aquatic → Sediment	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.50%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.60%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.01%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015069	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300034194	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_100151813	3300001686	Soil	MFAKTLIAALILATTSVALTSKGYAGPNGLGQHEQSYFDRASKVSEGGI*
C688J18823_100850251	3300001686	Soil	MFTKTLFAALILATASIALTSKVNAGPLTQQSENAYFDRASKVTDGGGN*
C688J35102_1194516671	3300002568	Soil	MFAKTLIAALILATTSVALTSKGSAGPNGFGQHEQSYFDRASKVSEGGI*
C688J35102_1208276322	3300002568	Soil	MFTKTLIAALILATTSVALTSRVYAGPKGSAQHEQSYFDRASKVSEGGI*
Ga0062593_1001588191	3300004114	Soil	MFVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFDRASQVSSGGI*
Ga0062593_1005779682	3300004114	Soil	MFAKTLIAALILATTSVALTPKVYAGPKGAFDQNERYLFDRASKVSEGGN*
Ga0063455_1015593071	3300004153	Soil	MFTKTLFAALILATASAALASKANAGPIGQQNQAEYSWMERASKVTDGGN*
Ga0062589_1012721951	3300004156	Soil	MFAKTLIAALILATTSVALTSKVYAGPTGQPQEHSYFDRASKVTDGGN*
Ga0063356_1011197152	3300004463	Arabidopsis Thaliana Rhizosphere	MFAKTLIAALILATTSVALTSKVYAGPNGFGQHEQSYFDRASKLSDGGGI*
Ga0062595_1006002432	3300004479	Soil	MFAKTLIAALIFATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN*
Ga0066672_104229171	3300005167	Soil	MLPKHPTETYMFAKTLIAALILATTSVALTSKVYAGPNGLSQGEISYFDRASKVTDGGGN
Ga0066671_101237963	3300005184	Soil	MFTKTLVAALILATASVALTSKSNAGPYAAPSQSELSWMDRASKTTDGGGN*
Ga0066675_111831541	3300005187	Soil	MFVKTLIAALILATTSVALTSKGYAGPQSETSYFDRASKVTDGGN*
Ga0068868_1021566521	3300005338	Miscanthus Rhizosphere	MFTKTLLAALLLATASVALTSKVNAGPAAPSQGELSYFERASKTTDGGN*
Ga0066687_101138375	3300005454	Soil	FVKTLIAALILATTSVALTSKGYAGPKGQSEISYFERASQVTDGGN*
Ga0066670_103241772	3300005560	Soil	MFVKTLIAALILATTSVALTSKGYAGPQNETSYFERASQVTDGGN*
Ga0066670_105058921	3300005560	Soil	MFAKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGGN*
Ga0066654_103497352	3300005587	Soil	MFAKTLIAALILATTSVALASKGYAGPNGFGQHEQSYFDRASKVSEGGI*
Ga0066654_105948101	3300005587	Soil	RPSTPTETTMFTKTLFAALILATASAALASKANAGPIGQQNQAEYSWMERASKVTDGGN*
Ga0066706_105713352	3300005598	Soil	MFTKTLIAALILATTSVALTSKVYAGPKGQFDHEQSYFDRASKVTDGGGN*
Ga0066656_104546711	3300006034	Soil	MFAKTLIAALILATTSVALTSKGYAGPNGFGQHEQSYFDRASKVSEGGI*
Ga0066652_1001526732	3300006046	Soil	MFAKTLIAAVILATTSVALTSKVYAGPKGSAQHEQSYFDRASKVSEGGI*
Ga0074049_102390812	3300006580	Soil	MFTKTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKVTDGGGL*
Ga0066660_105236621	3300006800	Soil	STPQRRHTMFTKTLFAALILATASVALTSKVNAGPTAQPQSQAEYSWMERASKITDGGSL
Ga0079217_116948152	3300006876	Agricultural Soil	MFTKTLFAALILATASVALTSKVNAGPNGQAHENSYFDRASKVTDGGGL*
Ga0105241_116993111	3300009174	Corn Rhizosphere	MFVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFD
Ga0105249_105633881	3300009553	Switchgrass Rhizosphere	MFTKTLIAALMLATASVALTSKVNAGPNQQPQTEYSWQDRASKNFDGGGY*
Ga0126307_104854301	3300009789	Serpentine Soil	MFTKTLFAALILATASAALASKANAGPIGQQNQGEYSWMERASKVTDGGN*
Ga0126307_114749871	3300009789	Serpentine Soil	MFTKTLIAALILATTSVALTSKVYAAPKGQDHQAESYFDRASKVPDGGGI*
Ga0126307_114766851	3300009789	Serpentine Soil	TTSVALTSKVYAGPKGQLDHEQSYFDRASKVTDGGN*
Ga0126313_107023082	3300009840	Serpentine Soil	MFATLIAALILATTPVALTSKVNAGPLSQAEQSYFERASKVTDGGN*
Ga0126313_110780831	3300009840	Serpentine Soil	MFAKTLIAALILATTSVALTSKVDAGPLSQAEQSYFERASKV
Ga0126304_108809951	3300010037	Serpentine Soil	KTLLAALILATTSVALTSKVNAGPLSQAEHSYFERASKVTDGGN*
Ga0126315_111846551	3300010038	Serpentine Soil	MFAKTLIAALILATTPVALTSKVNAGPLSQAEQSYFERASKVTDGGN*
Ga0126309_113090031	3300010039	Serpentine Soil	MFTKTLFAALILATASVALTSKVNAGPFAPNQGELSWMDRASKTTDGGN*
Ga0126308_102776531	3300010040	Serpentine Soil	IAALILATTSVALTSKVYAGPNGQSHENSYFDRASKVTDGGN*
Ga0126308_108497591	3300010040	Serpentine Soil	MFTKTLIAALILATTSVALTSKVYAGPKGQDHQAESYFDRASKVTDGGGL*
Ga0126312_111778442	3300010041	Serpentine Soil	MFAKTLIAALILATTSVALTSKVYAGPNGQTHENSYFDRASKVTDGGN*
Ga0126310_100779052	3300010044	Serpentine Soil	MFTKTLFAALILATASIALTSKVNAGPLTQHSENAYFDRASKVTDGGGN*
Ga0126310_104400021	3300010044	Serpentine Soil	PSTWRRTMFTKTLIAALILATTSVALTSKVYAGPKGQLDHEQSYFDRASKVTDGGN*
Ga0126310_104748621	3300010044	Serpentine Soil	KTLIPALILATTSVALTSKVYAGPNGQSHENSYFDRASKVTDGGN*
Ga0137376_103995903	3300012208	Vadose Zone Soil	MFAKTLIAALILATASVALTSKVYAGPNGLSQGEISYFERASKVTDGGN*
Ga0137376_113614272	3300012208	Vadose Zone Soil	KHPTETYMFAKTLIAALILATTSVALTSKVYAGPNGLSQGEISYFDRASKVTDGGGN*
Ga0137377_113374611	3300012211	Vadose Zone Soil	MFSKTLFAALILATASAALASKANAGPVGQQNQSEYSWMERASKTTDGGN*
Ga0150985_1001344113	3300012212	Avena Fatua Rhizosphere	LDQACPSTTETTMFTKTLIAALILATCSVALTSKVYAGPKGQFDHEQSYFDRASKVTDGGN*
Ga0150985_1022502981	3300012212	Avena Fatua Rhizosphere	SDHVRRSTEEDIMFTKTLIAALILATTSVALTSRVYAGPKGSAQHEQSYFDRASKVSEGGI*
Ga0150985_1037852572	3300012212	Avena Fatua Rhizosphere	MFAKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN*
Ga0150985_1040630721	3300012212	Avena Fatua Rhizosphere	MFAKALIAALILTTTSVALTSKVYAGPKGHADQHEQSYFDRASKVSEGGI*
Ga0150985_1050048971	3300012212	Avena Fatua Rhizosphere	RPSTPTETIMFTKTLLAALILATASIAVTSKVNAGPLGQQSENAYFDRASKVTDCGN*
Ga0150985_1054503412	3300012212	Avena Fatua Rhizosphere	MFTKTLIAALILATTSVALTSKVYAGPKSQFDHEQSYFDRASKVTDGGGA*
Ga0150985_1066957861	3300012212	Avena Fatua Rhizosphere	ALILATASAALASKANAGPIGQQNQAEYSWMERASKVTDGGN*
Ga0150985_1232308911	3300012212	Avena Fatua Rhizosphere	RRRTMFTKTLIAALILATTSVALTSKVYAGPKGQIDHEQSYFDRASKVTDGGGA*
Ga0150984_1102466682	3300012469	Avena Fatua Rhizosphere	MFTKSLIAALILATTSVALTSKVNAGPLSQAEQSYFERASKVTDGGN*
Ga0150984_1105119862	3300012469	Avena Fatua Rhizosphere	LVSDHVRRSTEEDIMFTKTLIAALILATTSVALTSRVYAGPKGSAQHEQSYFDRASKVSEGGI*
Ga0150984_1143706203	3300012469	Avena Fatua Rhizosphere	MFTKTLFAALILATASVALTSKANAGPFAAPSQGELSWMDRASKTTDGGGN*
Ga0150984_1202303551	3300012469	Avena Fatua Rhizosphere	MFTKTLIAALILATTSVALTSKVYAGPKGQIDHEQSYFDRASKVTDGGGA*
Ga0150984_1206236171	3300012469	Avena Fatua Rhizosphere	TETNMFTKTLLAALILATASVALTSKVNAGPGPSQGELSWMDRASKTTDGGN*
Ga0157308_102107922	3300012910	Soil	MFVKTLIAALILATTSIAVTSKVYAGPNGHSNQHEQSYFDRASQVSSGGI*
Ga0137394_113846201	3300012922	Vadose Zone Soil	MFTKTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKVTDGGGQ*
Ga0164301_112455022	3300012960	Soil	MFTKTLIAALILATTSVALTSKVYAGPNGSSQHEQSYFDRASKVSEGGI*
Ga0164302_114346611	3300012961	Soil	PRPPKHQRRRTLFAKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN
Ga0164304_111464102	3300012986	Soil	MFTKTLIATLIPATASVALTSKVYAVSKGQFDHQDRSYFERASKVTDGGN*
Ga0163162_118794793	3300013306	Switchgrass Rhizosphere	MFAKTLIAALILATASVALTSKVYAGPQTENSYFDRASKVTDGGNLGAVL*
Ga0134079_103421912	3300014166	Grasslands Soil	MFTKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN*
Ga0167633_1018384	3300015069	Glacier Forefield Soil	MFTKTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKTTDGGGL*
Ga0134072_101608091	3300015357	Grasslands Soil	MFAKTLIAALILATTSVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN*
Ga0132258_120545372	3300015371	Arabidopsis Rhizosphere	MFAKSLIAALILATTFVALTSKVYAGPTGQPQEHSYFDRASKVTDGGN*
Ga0132256_1035940071	3300015372	Arabidopsis Rhizosphere	MFAKTLIAALLLATASVALTSKVYAGPNGLSQGETSYFDRASKVTDGGN*
Ga0184604_102056721	3300018000	Groundwater Sediment	MFTKTLFAALILATASVALTSKVNAGPQSHQAESSYFDRASKVTDGGGL
Ga0184617_10908321	3300018066	Groundwater Sediment	MFTKTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKVTDGGGL
Ga0190272_120615741	3300018429	Soil	RPAQAPQRRRIMFTKTLFAALILATASVALTSKVNAGPNGQSQAEYSWMERASKTTDGGG
Ga0190272_129761861	3300018429	Soil	RRRIMFTKTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKTTDGGGL
Ga0066655_105249412	3300018431	Grasslands Soil	MFTKTLLAALILATASVALTSKVNAGPTGQSQAEYNWMERASKVTDGGGQ
Ga0066655_105851342	3300018431	Grasslands Soil	MFAKTLIAALILATTSVALTSKVYAGPNGLSQGEISYFDRASKVTDGGGN
Ga0190275_101116463	3300018432	Soil	MFTKTLFAALILATASVALASKVNAGPLGQNEYSWMERASKTTDGGGI
Ga0066667_105899472	3300018433	Grasslands Soil	MPPKHPTETYMFAKTLIAALILATTSVALTSKVYAGPNGLSQGEISYFDRASKVTDGGGN
Ga0190269_120526952	3300018465	Soil	MFTKTLFAALILATASVALTSKVNAGPNSQAELAWMERASKTTDGGGI
Ga0066662_100402532	3300018468	Grasslands Soil	MFTKTLFAALILATASVALTSKANAGPFAAPSQGELSWMDRASKTTDGGGN
Ga0066662_101136463	3300018468	Grasslands Soil	MFTKTLIAALILATTSVALTSKAYAGPKGQIDHEQSYFDRASKVTDGGGA
Ga0066662_103464582	3300018468	Grasslands Soil	MFVKTLIAALILATTSVALTSKGYAGPQNETLYFERASQVTDGGN
Ga0066662_106579122	3300018468	Grasslands Soil	MFAKTLIAALILATTSVALTSKVYAGPKGHQDQTESSYFDRASKVTDGGN
Ga0066662_109529532	3300018468	Grasslands Soil	MFTKTLIAALILATASVALTSKVYAGPNGLSQGEISYFDRASKVTDGGN
Ga0066662_114576422	3300018468	Grasslands Soil	MFTKTLFAALILATASVALTSKVNAGPTAQPQSQAEYSWMERASKITDGGSL
Ga0066662_116418361	3300018468	Grasslands Soil	KTLIAALILATTSVALTSKVYAGPNGQQIENSYFDRASKVTDGGN
Ga0066662_126335662	3300018468	Grasslands Soil	MFAKTLIAALILATTSVALTSKGYAGPNGFGQHEQSYFD
Ga0066669_109859631	3300018482	Grasslands Soil	MFAKTLIAALILATTSVALTSKVNAGPNGLSQGEISYFDRASKVTDGGGN
Ga0190273_109433321	3300018920	Soil	MFTKTLFAALILATASVALTSKVNAGPNGQSQAEYSWMERASKNTDGGGI
Ga0173482_100002966	3300019361	Soil	MFAKTLIAALILATTSVALTPKVYAGPKGAFDQNERYLFDRASKVSEGGN
Ga0173482_100124813	3300019361	Soil	MFVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFDRASQVSSGGI
Ga0193717_10066957	3300020060	Soil	MFAKTLFAALILATASVALTSKVNAGPNGQGHAEYSWMERASKTTDGGGI
Ga0193717_10209301	3300020060	Soil	MFTKTLFAALILATASVALTSKVNAGPQSHQAENSY
Ga0193717_10209304	3300020060	Soil	MFTKTLFAALILATASVALTSKVNAGPLGQSQNEYSWMERASKTIDGGGI
Ga0193716_10452915	3300020061	Soil	AALILATASVALTSKVNAGPLGQSQNEYSWMERASKTIDGGGI
Ga0193716_11777551	3300020061	Soil	LATASVALTSKVNAGPQSHQAENSYFDRASKTTDGGGL
Ga0182009_106949881	3300021445	Soil	MFAKTLIAALILATTSVALTSKVYAAPKGQFDHEQSYFD
Ga0247792_10300531	3300022880	Soil	TTSIAVTSKVYAGPNGHSDQHEQSYFDRASQVSSGGI
Ga0247743_10238161	3300023067	Soil	FVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFDRASQVSSGGI
Ga0207706_100577461	3300025933	Corn Rhizosphere	MFVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFDRASQVSS
Ga0207704_117008181	3300025938	Miscanthus Rhizosphere	MFVKTLIAALILATTSIAVTSKVYAGPNGHSDQHEQSYFDRASQV
Ga0207712_103809932	3300025961	Switchgrass Rhizosphere	MFTKTLIAALMLATASVALTSKVNAGPNQQPQTEYSWQDRASKNFDGGGY
Ga0207640_101746371	3300025981	Corn Rhizosphere	MFVKTLIAALILATTSIAVTSKVYAGPNGHSNQHEQSYFDRASQVSSGGI
Ga0209474_107768861	3300026550	Soil	MFVKTLIAALILATTSVALTSKGYAGPQSETSYFERASKVTDGGN
Ga0209486_103194892	3300027886	Agricultural Soil	MFTKTLFAALILATASVALTSKVNAGPNGQAHENSYFDRASKVTDGGGL
Ga0268266_117040152	3300028379	Switchgrass Rhizosphere	FAALILATASLSLTSKVSAGPFTPSHGELSWMDRASQTTDGGN
Ga0268265_124177212	3300028380	Switchgrass Rhizosphere	GLAVVRNIGACKRLGIGPRPPKHQRRRIMFAKTLIAALILATASVALTSKVYAGPQTENSYFDRASKVIDGGN
Ga0137415_114662051	3300028536	Vadose Zone Soil	KTLFAALILATASVALTSKVNAGPQSHQAENSYFDRASKVTDGGGL
Ga0307408_1013942171	3300031548	Rhizosphere	MFAKTLIAALILATASVALTSKVYAGPKGHDHQAENSYFERASKLTDGGGI
Ga0310813_112241932	3300031716	Soil	MFAKTLIAALILATTSVALTSKVYAGPTGQPQEHSYFDRASKVTDGGN
Ga0370499_0084888_493_642	3300034194	Untreated Peat Soil	MFTKTLFAALLLATASVALTSKVNAGPQSHQAENSYFDRASKTTDGGGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088847

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences