Metagenome / Metatranscriptome Family F088839

Basic Information
Family ID	F088839
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	84 residues
Representative Sequence	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR
Number of Associated Samples	93
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.24 %
% of genes near scaffold ends (potentially truncated)	38.53 %
% of genes from short scaffolds (< 2000 bps)	81.65 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Unclassified (61.468 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (8.257 % of family members)
Environment Ontology (ENVO)	Unclassified (35.780 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.294 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.77% β-sheet: 25.44% Coil/Unstructured: 65.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07813	LTXXQ	25.69
PF01642	MM_CoA_mutase	8.26
PF00839	Cys_rich_FGFR	3.67
PF06500	FrsA-like	1.83
PF00990	GGDEF	1.83
PF14325	DUF4383	0.92
PF05378	Hydant_A_N	0.92
PF03308	MeaB	0.92
PF00326	Peptidase_S9	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	102.75
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	8.26
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
All Organisms	root	All Organisms	38.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
cellular organisms	root	All Organisms → cellular organisms	38.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.60 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	6.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	6.42 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	6.42 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	5.50 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	6.42 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.50 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	6.42 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.50 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	6.42 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.50 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.47 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	6.42 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.50 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101641141	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300000955\|JGI1027J12803_100395717	Not Available	522	Open in IMG/M
3300004114\|Ga0062593_100706574	Not Available	984	Open in IMG/M
3300004156\|Ga0062589_100611406	Not Available	948	Open in IMG/M
3300004156\|Ga0062589_101449290	Not Available	672	Open in IMG/M
3300004157\|Ga0062590_100578449	Not Available	981	Open in IMG/M
3300004463\|Ga0063356_100389091	All Organisms → cellular organisms → Bacteria → Proteobacteria	1786	Open in IMG/M
3300004479\|Ga0062595_100554654	Not Available	881	Open in IMG/M
3300004643\|Ga0062591_100710718	Not Available	911	Open in IMG/M
3300004643\|Ga0062591_102137782	Not Available	581	Open in IMG/M
3300004798\|Ga0058859_11458152	Not Available	843	Open in IMG/M
3300004801\|Ga0058860_10219876	Not Available	634	Open in IMG/M
3300004803\|Ga0058862_12750079	Not Available	706	Open in IMG/M
3300005183\|Ga0068993_10088190	Not Available	974	Open in IMG/M
3300005295\|Ga0065707_10013896	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1899	Open in IMG/M
3300005295\|Ga0065707_10287787	All Organisms → cellular organisms → Bacteria → Proteobacteria	1032	Open in IMG/M
3300005332\|Ga0066388_102039195	Not Available	1030	Open in IMG/M
3300005335\|Ga0070666_10497708	Not Available	883	Open in IMG/M
3300005353\|Ga0070669_100303552	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1285	Open in IMG/M
3300005365\|Ga0070688_100177517	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300005440\|Ga0070705_100019425	All Organisms → cellular organisms → Bacteria	3576	Open in IMG/M
3300005440\|Ga0070705_100250474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1243	Open in IMG/M
3300005444\|Ga0070694_100250630	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
3300005526\|Ga0073909_10047664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	1542	Open in IMG/M
3300005545\|Ga0070695_100147821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
3300005546\|Ga0070696_100441883	Not Available	1025	Open in IMG/M
3300005546\|Ga0070696_101196783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300005578\|Ga0068854_101644184	Not Available	586	Open in IMG/M
3300005618\|Ga0068864_101656215	Not Available	644	Open in IMG/M
3300005841\|Ga0068863_100640645	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005841\|Ga0068863_100862358	Not Available	905	Open in IMG/M
3300005844\|Ga0068862_102643258	Not Available	514	Open in IMG/M
3300006049\|Ga0075417_10301443	Not Available	777	Open in IMG/M
3300006605\|Ga0074057_11483994	Not Available	706	Open in IMG/M
3300006606\|Ga0074062_12333878	Not Available	764	Open in IMG/M
3300006755\|Ga0079222_10246805	Not Available	1119	Open in IMG/M
3300006854\|Ga0075425_101113364	Not Available	899	Open in IMG/M
3300006880\|Ga0075429_100062679	All Organisms → cellular organisms → Bacteria → Proteobacteria	3240	Open in IMG/M
3300007076\|Ga0075435_100114814	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300009036\|Ga0105244_10130923	Not Available	1210	Open in IMG/M
3300009101\|Ga0105247_11466188	Not Available	555	Open in IMG/M
3300009162\|Ga0075423_10028853	All Organisms → cellular organisms → Bacteria	5592	Open in IMG/M
3300009545\|Ga0105237_10769080	Not Available	970	Open in IMG/M
3300010373\|Ga0134128_10188944	All Organisms → cellular organisms → Bacteria	2323	Open in IMG/M
3300010397\|Ga0134124_10013810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6545	Open in IMG/M
3300010399\|Ga0134127_11963781	Not Available	663	Open in IMG/M
3300010400\|Ga0134122_10894470	Not Available	858	Open in IMG/M
3300010400\|Ga0134122_11166199	Not Available	768	Open in IMG/M
3300010400\|Ga0134122_11329834	Not Available	728	Open in IMG/M
3300010401\|Ga0134121_10044074	All Organisms → cellular organisms → Bacteria	3650	Open in IMG/M
3300010401\|Ga0134121_10740217	Not Available	937	Open in IMG/M
3300011119\|Ga0105246_10363403	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1190	Open in IMG/M
3300011434\|Ga0137464_1109793	Not Available	817	Open in IMG/M
3300012212\|Ga0150985_111992163	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1620	Open in IMG/M
3300012469\|Ga0150984_118624221	Not Available	728	Open in IMG/M
3300012685\|Ga0137397_10323401	Not Available	1150	Open in IMG/M
3300012905\|Ga0157296_10281142	Not Available	573	Open in IMG/M
3300012922\|Ga0137394_10263292	Not Available	1474	Open in IMG/M
3300012951\|Ga0164300_10569471	Not Available	662	Open in IMG/M
3300012955\|Ga0164298_10478005	Not Available	827	Open in IMG/M
3300012961\|Ga0164302_10778386	Not Available	719	Open in IMG/M
3300013100\|Ga0157373_11381260	Not Available	535	Open in IMG/M
3300015371\|Ga0132258_12551655	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1278	Open in IMG/M
3300015374\|Ga0132255_100021682	All Organisms → cellular organisms → Bacteria → Proteobacteria	7919	Open in IMG/M
3300015374\|Ga0132255_100935457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1297	Open in IMG/M
3300015374\|Ga0132255_101964281	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300018083\|Ga0184628_10512913	Not Available	618	Open in IMG/M
3300024178\|Ga0247694_1030901	Not Available	601	Open in IMG/M
3300024181\|Ga0247693_1026285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	792	Open in IMG/M
3300024224\|Ga0247673_1005547	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1562	Open in IMG/M
3300024224\|Ga0247673_1005610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1555	Open in IMG/M
3300024347\|Ga0179591_1023215	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300025885\|Ga0207653_10012663	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300025908\|Ga0207643_10020223	All Organisms → cellular organisms → Bacteria	3652	Open in IMG/M
3300025921\|Ga0207652_10205176	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300025922\|Ga0207646_11534370	Not Available	576	Open in IMG/M
3300025933\|Ga0207706_10905682	Not Available	745	Open in IMG/M
3300025935\|Ga0207709_10002744	All Organisms → cellular organisms → Bacteria	10856	Open in IMG/M
3300025941\|Ga0207711_11887347	Not Available	540	Open in IMG/M
3300025960\|Ga0207651_10454182	Not Available	1100	Open in IMG/M
3300026088\|Ga0207641_10501847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1178	Open in IMG/M
3300026088\|Ga0207641_10717852	Not Available	985	Open in IMG/M
3300026088\|Ga0207641_12457205	Not Available	520	Open in IMG/M
3300026142\|Ga0207698_10242159	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1645	Open in IMG/M
3300027821\|Ga0209811_10009405	All Organisms → cellular organisms → Bacteria	3135	Open in IMG/M
3300027873\|Ga0209814_10070637	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300027907\|Ga0207428_11100870	Not Available	555	Open in IMG/M
3300027909\|Ga0209382_11666944	Not Available	627	Open in IMG/M
3300028792\|Ga0307504_10451358	Not Available	515	Open in IMG/M
3300031152\|Ga0307501_10000022	All Organisms → cellular organisms → Bacteria → Proteobacteria	7276	Open in IMG/M
3300031199\|Ga0307495_10079448	Not Available	738	Open in IMG/M
3300031226\|Ga0307497_10265092	Not Available	773	Open in IMG/M
3300031547\|Ga0310887_10079226	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300031562\|Ga0310886_10109846	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300031740\|Ga0307468_100115602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1637	Open in IMG/M
3300031740\|Ga0307468_102460588	Not Available	509	Open in IMG/M
3300031820\|Ga0307473_10028915	All Organisms → cellular organisms → Bacteria → Proteobacteria	2386	Open in IMG/M
3300031943\|Ga0310885_10229227	Not Available	931	Open in IMG/M
3300031944\|Ga0310884_10712462	Not Available	608	Open in IMG/M
3300032003\|Ga0310897_10494642	Not Available	592	Open in IMG/M
3300032013\|Ga0310906_10780034	Not Available	673	Open in IMG/M
3300032421\|Ga0310812_10432927	Not Available	592	Open in IMG/M
3300034150\|Ga0364933_130862	Not Available	644	Open in IMG/M
3300034417\|Ga0364941_087261	Not Available	740	Open in IMG/M
3300034820\|Ga0373959_0051659	Not Available	889	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.55%
Host-Associated	Host-Associated	39.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.80%
Plants	Host-Associated → Plants	36.70%
Aquatic	Environmental → Aquatic	2.75%
Human	Host-Associated → Human	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.60%
Digestive System	Host-Associated → Human → Digestive System	2.75%
Sediment	Environmental → Aquatic → Sediment	1.83%
Floodplain	Environmental → Terrestrial → Floodplain	1.83%
Marine	Environmental → Aquatic → Marine	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1016411413	3300000364	Soil	MXVLAXFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAPQRKKPGAGPKKKHR*
JGI1027J12803_1003957171	3300000955	Soil	FDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAPQRKKPGAGPKKKHR*
JGI24750J21931_10309503	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPR
Ga0062593_1007065742	3300004114	Soil	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0062589_1006114062	3300004156	Soil	MKVMALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0062589_1014492901	3300004156	Soil	MKVLALFDKRGKIHALFHPSTEADAPQLRFRPEAGRRAEMLDVPAELRHLNPGQLHAALRVEFTGGRPMLAAQKKKTAVQKKKPKR*
Ga0062590_1005784492	3300004157	Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0063356_1003890912	3300004463	Arabidopsis Thaliana Rhizosphere	MKILALFDKGGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHRLEPGQLHAALRVELVGGKPRLAAQKKKQKRRSRR*
Ga0062595_1005546542	3300004479	Soil	MKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0062591_1007107183	3300004643	Soil	LALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0062591_1021377822	3300004643	Soil	LALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0058859_114581522	3300004798	Host-Associated	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKPP*
Ga0058860_102198761	3300004801	Host-Associated	NELMKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKPP*
Ga0058862_127500792	3300004803	Host-Associated	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0068993_100881902	3300005183	Natural And Restored Wetlands	MKVLALFDKRGRIHALFHPSTEADAPQLSFHPGQDRRAQMLDVPAEFHHLKPGQLHAALRVDLAGRTPRLAAQKKKRIAGQKKKQKR*
Ga0065707_100138963	3300005295	Switchgrass Rhizosphere	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKHP*
Ga0065707_102877873	3300005295	Switchgrass Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKRIAGQKKKHP*
Ga0066388_1020391953	3300005332	Tropical Forest Soil	MKVLALFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKPRLAAQKRKPATVQKKKQKR*
Ga0070666_104977082	3300005335	Switchgrass Rhizosphere	VLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0070669_1003035523	3300005353	Switchgrass Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRREPWLPAGELDAQRRMQLAGLQVVKL
Ga0070688_1001775173	3300005365	Switchgrass Rhizosphere	FHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0070705_1000194251	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LMKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0070705_1002504743	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDQSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0070694_1002506302	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDKRGKIHALFHPSTEADAPRLTFHPGQGRRTEMLDVPAELHHLNPGQLHAALRVELAGGRPRLAAQKKKRSAGAKKKHP*
Ga0073909_100476642	3300005526	Surface Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAQMLDVPAEFHHLNPGQLHAALRVDLAGGKPRLAAQKKNQIAAQKKKR*
Ga0070695_1001478213	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDKRGKIHALFHPSTEADAPRLSFHPGQGRRAEMLDVPAELHHLNPGQLHAALRVELAGGRPRLAAQKKKRSAGAKKKHP*
Ga0070696_1004418832	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDRAGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPVEFHHLKPGQLHAALRVDLAGGKPRLAAQKKKPLTGRKKKQRKR*
Ga0070696_1011967831	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDKGGKIYALFHPSTDAGAPQLSFHPERGRRAEMLDVPAEFHHLKPEQLHAALRVELAGGKPRLAAQKKKPLTGRSKTRKR*
Ga0068854_1016441841	3300005578	Corn Rhizosphere	FHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0068864_1016562151	3300005618	Switchgrass Rhizosphere	MKVLALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKKKPVAGRKKKQKR*
Ga0068863_1006406451	3300005841	Switchgrass Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQK
Ga0068863_1008623583	3300005841	Switchgrass Rhizosphere	ALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0068862_1026432581	3300005844	Switchgrass Rhizosphere	LALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKKKPVAGRKKKQKR*
Ga0075417_103014431	3300006049	Populus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRKKKHP*
Ga0074057_114839941	3300006605	Soil	MKVLALFDKSGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLAGGKPRLAAQKKKQTTGPKKKPR*
Ga0074062_123338782	3300006606	Soil	MKVLALFDKSGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVDVAGRTPRLAAQKKMQNAAKKKKR*
Ga0079222_102468052	3300006755	Agricultural Soil	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKMKHP*
Ga0075425_1011133642	3300006854	Populus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLAGGKPRLAAQKKKQTTGPKKPR*
Ga0075429_1000626795	3300006880	Populus Rhizosphere	MKVLALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKQKPVAGRKKQER*
Ga0075435_1001148143	3300007076	Populus Rhizosphere	MKVLALFDKGGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKQKPVAGRKKKQKR*
Ga0105244_101309233	3300009036	Miscanthus Rhizosphere	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0105247_114661882	3300009101	Switchgrass Rhizosphere	FDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0075423_100288535	3300009162	Populus Rhizosphere	MKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPWQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0105237_107690802	3300009545	Corn Rhizosphere	MKVLAVFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0134128_101889441	3300010373	Terrestrial Soil	GNQSMKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAETLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0134124_100138108	3300010397	Terrestrial Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPGAGRKKKHP*
Ga0134127_119637811	3300010399	Terrestrial Soil	IHALFHPSTEADAPQLRFRPEAGRRAEMLDVPAELRHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR*
Ga0134122_102397913	3300010400	Terrestrial Soil	PSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPGAGRKKKHP*
Ga0134122_108944703	3300010400	Terrestrial Soil	MKVLALFDKRGKIHALFHPSTEADAPRLSFHPGQGRRAEMLDVPAELHHLNPGQLHAALRVELAGGRPRLAA
Ga0134122_111661993	3300010400	Terrestrial Soil	MKVLALFDKSGRIHALFHPSTEADAPQLRFHPKGGHRAEMLDVPAEFHHLNPGQLHAALRVELAGGRAKLAAQKKKPGAVQKK
Ga0134122_113298342	3300010400	Terrestrial Soil	MKVLALFDKGGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPLEFHHLEPGQLHAALRVDLAGAKPRLAARKQKPVAGRKKKQKR*
Ga0134121_100440742	3300010401	Terrestrial Soil	MKVLALFDQSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKRKQKR*
Ga0134121_107402173	3300010401	Terrestrial Soil	MKVLALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFRHLEPGQLHAALRVDLAGGKPRLAARKKNPVAGRKKKQKR*
Ga0105246_103634031	3300011119	Miscanthus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAG
Ga0137464_11097932	3300011434	Soil	MKVLALFDKRGRIHALFHPSTEADAPQLRFHPEASRRAEMLDVPAEFRHLNPGQLHAALRVDLAGGRPRLAAQKKKQSAAQKKKQKR*
Ga0150985_1119921632	3300012212	Avena Fatua Rhizosphere	MKVLALFDTSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKAGQLHAALRVDLVGGKPRLAAQKKKQTASKKKK*
Ga0150984_1186242213	3300012469	Avena Fatua Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKAGQLHAALRVDLVGGKPRLAAQKKKQTASKKKK*
Ga0137397_103234013	3300012685	Vadose Zone Soil	MKVMALFDKRGRIHALFHPSTEADAPQLRFHPEGGRRAEMLDVPAEFHHLKPAQLHAALRVDLVGGKPRLAAQKKKQIAGQKKKPKR*
Ga0157296_102811421	3300012905	Soil	HALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR*
Ga0137394_102632922	3300012922	Vadose Zone Soil	MKVMALFDKRGRIHALFHPSTEADAPQLRFHPEGGRRAEMLDVPAEFHHLKPAQLHAALRLDLVGGKPRVAAQKKKQIAGQKKKPKR*
Ga0164300_105694712	3300012951	Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKNQIAAQKKKR*
Ga0164298_104780051	3300012955	Soil	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKNQIAAQKKKR*
Ga0164302_107783861	3300012961	Soil	TRSKGNELMKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKNQIAAQKQKR*
Ga0157373_113812602	3300013100	Corn Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKK
Ga0157371_108275402	3300013102	Corn Rhizosphere	STEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP*
Ga0132258_125516553	3300015371	Arabidopsis Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKHP
Ga0132255_1000216825	3300015374	Arabidopsis Rhizosphere	MKVLALFDKGGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKRIAGQKKKHP*
Ga0132255_1009354571	3300015374	Arabidopsis Rhizosphere	KSGKIHALFHPSTEADAPHLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPGAGRKKKHP*
Ga0132255_1019642811	3300015374	Arabidopsis Rhizosphere	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPG
Ga0184628_105129132	3300018083	Groundwater Sediment	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPGQGRRAQMLDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKRIAGQKKKHP
Ga0247694_10309012	3300024178	Soil	MKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHATLRVELAGGKARLAGQKKKPSAVQKKQKR
Ga0247693_10262852	3300024181	Soil	GRIHALFHPSTQADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKPRLAAQRKKPAAVQKKKQQR
Ga0247673_10055472	3300024224	Soil	MKVLALFDKSGRIHALFHPSTQADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKPRLAAQRKKPAAVQKKKQQR
Ga0247673_10056102	3300024224	Soil	MKVLALFDKSGKIHALFHPSKEPDAPRLSFHPERGRRAEMLDVPTEFHHLKPGQLHAALRVDLAGGKPRLAPHKKHTAGAKTKRKR
Ga0179591_10232152	3300024347	Vadose Zone Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLAGGKPRLAAQKKKRIADQKKKYR
Ga0207653_100126631	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKPSAVQKKQKR
Ga0207643_100202235	3300025908	Miscanthus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKPP
Ga0207671_108358521	3300025914	Corn Rhizosphere	PSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP
Ga0207652_102051763	3300025921	Corn Rhizosphere	LFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP
Ga0207646_115343701	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RSKGNELMKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP
Ga0207706_109056821	3300025933	Corn Rhizosphere	NELMKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP
Ga0207709_100027448	3300025935	Miscanthus Rhizosphere	LFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQIAGPKKKHP
Ga0207711_118873471	3300025941	Switchgrass Rhizosphere	MKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLAGQKKKP
Ga0207651_104541823	3300025960	Switchgrass Rhizosphere	MKVLALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKKKPVAGRKKKQKR
Ga0207641_105018473	3300026088	Switchgrass Rhizosphere	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRAWLAAQKTKPGAGRKKKHP
Ga0207641_107178521	3300026088	Switchgrass Rhizosphere	WHPRSTRSKGNELMKVMALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQNAGQKKKHR
Ga0207641_124572051	3300026088	Switchgrass Rhizosphere	TRSRGKRMKVLALFDKGGKIHALFHPSTEANAPQLRFHPERGRRAEMLDVPVEFHHLEPGQLHAALRVDLAGAKPRLAARKKKPVAGRKKKQKR
Ga0207698_102421591	3300026142	Corn Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPRLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAAQKKKQI
Ga0209811_100094053	3300027821	Surface Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAQMLDVPAEFHHLNPGQLHAALRVDLAGGKPRLAAQKKNQIAAQKKKR
Ga0209814_100706372	3300027873	Populus Rhizosphere	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRKKKHP
Ga0207428_111008701	3300027907	Populus Rhizosphere	GNELMKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKHP
Ga0209382_116669442	3300027909	Populus Rhizosphere	MKILALFDKGGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHRLEPGQLHAALRVELVGGKPRLAAQKKKQKRRSRR
Ga0307504_104513581	3300028792	Soil	MKVLALFDKSGKIHALFHPSTEADSPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGKPRLAGQKRKPSAGQKKKHR
Ga0307501_100000227	3300031152	Soil	MKVLALFDKRGRIHALFHPSTEADAPQLRFRPEAGRRAEILDIPAEFHHLNPGQLHAALRVDVAGRTPRLAAQKRQIAAPKKKSKR
Ga0307495_100794481	3300031199	Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKQIAGQKKKHP
Ga0307497_102650921	3300031226	Soil	MKVLALFDKGGKIHALFHPSTEADAPQLRFHPEGGRRAQMLDVPAEFHHLNPGQLHAALRVDLAGGTPRLAAQKKK
Ga0310887_100792262	3300031547	Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKHP
Ga0310886_101098463	3300031562	Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPGAGRKKKHP
Ga0307468_1001156022	3300031740	Hardwood Forest Soil	MKVLALFDKSGKIHALFHPSTEADAPQLSFHEERGRRAEMLDVPAEFHHLKPGQLHAALRVELVGGKPRLAAHKKKSSAGQKKKHP
Ga0307468_1024605882	3300031740	Hardwood Forest Soil	MKLLALFDKTGKIHALFQPSTEGDAPQLSFHPQAGRRAAMLDVPAELHHLNPGQLHAALRVELRGGTPRLAAQTRRPGAAKKKRKG
Ga0307473_100289154	3300031820	Hardwood Forest Soil	RDKHDSPKVLALFDKSGKIHALFHPSTEADAPQLSFHEERGRRAEMLDVPAEFHHLKPGQLHAALRVELVGGKPRLAAHKKKSSAGQKKKHP
Ga0310885_102292272	3300031943	Soil	SKGNELMKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKHP
Ga0310884_107124622	3300031944	Soil	LMKVLALFDKSGKIHALFHPSTEADAPQLSFHPERGRRAQMLDVPAEFHHLNPGQLHAALRVDLAGGKPRLAAQKKNQIAAQKKKR
Ga0310897_104946422	3300032003	Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKTKPSAGRNKKH
Ga0310906_107800341	3300032013	Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLA
Ga0310812_104329272	3300032421	Soil	MKVLAVFDKSGKIHALFHPSTEADAPQLRFHPERGRRAEMLDVPAEFHHLNPGQLHAALRVELAGGKARLA
Ga0364933_130862_3_239	3300034150	Sediment	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPGQGRRAQMLDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKRIA
Ga0364941_087261_231_491	3300034417	Sediment	MKVLALFDKSGKIHALFHPSTEADAPQLSFHPGQGRRAQMFDVPAEFHHLKPGQLHAALRVDLVGGKPRLAAQKKKRIAGQKKKHP
Ga0373959_0051659_4_264	3300034820	Rhizosphere Soil	MKVLALFDKSGKIHALFHPSTETDAPQLSFHPERGRRAEMLDVPAEFHHLKPGQLHAALRVELAGGRARLAAQKSKPSAGRNKKHP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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