Metagenome / Metatranscriptome Family F088793

Basic Information
Family ID	F088793
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	47 residues
Representative Sequence	PRDVISVAFSGPDRKTLYAVSRDNALNKDWIIAIQMIAQGPKGRGK
Number of Associated Samples	104
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	96.33 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Most Common Taxonomy
Group	Bacteria (73.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (26.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.202 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.08% Coil/Unstructured: 68.92%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01436	NHL	3.67
PF02784	Orn_Arg_deC_N	2.75
PF02627	CMD	1.83
PF00270	DEAD	1.83
PF12706	Lactamase_B_2	1.83
PF12543	DUF3738	1.83
PF00753	Lactamase_B	1.83
PF07883	Cupin_2	1.83
PF00675	Peptidase_M16	0.92
PF00226	DnaJ	0.92
PF01381	HTH_3	0.92
PF13533	Biotin_lipoyl_2	0.92
PF01799	Fer2_2	0.92
PF02738	MoCoBD_1	0.92
PF08241	Methyltransf_11	0.92
PF13676	TIR_2	0.92
PF07690	MFS_1	0.92
PF02899	Phage_int_SAM_1	0.92
PF07517	SecA_DEAD	0.92
PF04185	Phosphoesterase	0.92
PF01380	SIS	0.92
PF07519	Tannase	0.92
PF05163	DinB	0.92
PF08327	AHSA1	0.92
PF08450	SGL	0.92
PF01717	Meth_synt_2	0.92
PF03544	TonB_C	0.92
PF13620	CarboxypepD_reg	0.92
PF13186	SPASM	0.92
PF00903	Glyoxalase	0.92
PF00440	TetR_N	0.92
PF00155	Aminotran_1_2	0.92
PF10615	DUF2470	0.92
PF01979	Amidohydro_1	0.92
PF05016	ParE_toxin	0.92
PF01144	CoA_trans	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	2.75
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	2.75
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.83
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.83
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.92
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.92
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.92
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.92
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.92
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.92
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.61 %
Unclassified	root	N/A	26.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.34 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.34 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.42 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.67 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.83 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.92 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.92 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.92 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.92 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.42 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.83 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.92 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.92 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.92 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.42 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	1.83 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.92 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.42 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	1.83 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.92 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.92 %
unclassified Candidatus Solibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.42 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1.83 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.92 %
Methylobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.	0.92 %
Granulicella sp. S156	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101738521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	577	Open in IMG/M
3300004152\|Ga0062386_101084888	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300004476\|Ga0068966_1430995	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300004635\|Ga0062388_101483249	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005336\|Ga0070680_100831503	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005364\|Ga0070673_100526588	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300005458\|Ga0070681_10660523	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005538\|Ga0070731_10199439	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300005541\|Ga0070733_10679686	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005544\|Ga0070686_100403390	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300005577\|Ga0068857_101685687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300005578\|Ga0068854_100826379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.	809	Open in IMG/M
3300005591\|Ga0070761_10716017	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005615\|Ga0070702_101007272	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300005616\|Ga0068852_100382419	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300005616\|Ga0068852_100966595	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300005618\|Ga0068864_100602682	All Organisms → cellular organisms → Bacteria → Proteobacteria	1066	Open in IMG/M
3300005842\|Ga0068858_100466549	Not Available	1218	Open in IMG/M
3300005921\|Ga0070766_10480441	Not Available	823	Open in IMG/M
3300006638\|Ga0075522_10285477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300006755\|Ga0079222_10705084	Not Available	800	Open in IMG/M
3300006755\|Ga0079222_11105434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300006806\|Ga0079220_11913779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	526	Open in IMG/M
3300006881\|Ga0068865_100785594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	820	Open in IMG/M
3300006893\|Ga0073928_11196659	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300009093\|Ga0105240_10513995	Not Available	1330	Open in IMG/M
3300009098\|Ga0105245_11415039	All Organisms → cellular organisms → Bacteria → FCB group	745	Open in IMG/M
3300009148\|Ga0105243_10397417	Not Available	1279	Open in IMG/M
3300009174\|Ga0105241_10550823	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300009239\|Ga0103858_10094479	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300009254\|Ga0103867_1022906	Not Available	641	Open in IMG/M
3300009521\|Ga0116222_1054928	All Organisms → cellular organisms → Bacteria → Acidobacteria	1731	Open in IMG/M
3300010048\|Ga0126373_11481121	Not Available	744	Open in IMG/M
3300010358\|Ga0126370_11050348	Not Available	747	Open in IMG/M
3300010361\|Ga0126378_12667402	Not Available	571	Open in IMG/M
3300010373\|Ga0134128_10508843	Not Available	1343	Open in IMG/M
3300010375\|Ga0105239_10524387	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300010376\|Ga0126381_104152609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	562	Open in IMG/M
3300010397\|Ga0134124_10266148	Not Available	1583	Open in IMG/M
3300012989\|Ga0164305_11257632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300014158\|Ga0181521_10548041	Not Available	548	Open in IMG/M
3300014169\|Ga0181531_10278435	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300014201\|Ga0181537_10249924	Not Available	1218	Open in IMG/M
3300014201\|Ga0181537_10966720	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300014262\|Ga0075301_1083299	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300014489\|Ga0182018_10336877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300014495\|Ga0182015_10611244	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	691	Open in IMG/M
3300014658\|Ga0181519_10978948	Not Available	525	Open in IMG/M
3300014969\|Ga0157376_12081414	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300016294\|Ga0182041_10802945	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300016341\|Ga0182035_11214318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	674	Open in IMG/M
3300017988\|Ga0181520_10803745	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300018014\|Ga0187860_1198445	Not Available	824	Open in IMG/M
3300018037\|Ga0187883_10628382	Not Available	558	Open in IMG/M
3300018062\|Ga0187784_11554389	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300019278\|Ga0187800_1492687	Not Available	650	Open in IMG/M
3300020580\|Ga0210403_11243155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	571	Open in IMG/M
3300020583\|Ga0210401_10908277	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300021171\|Ga0210405_11202921	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300021180\|Ga0210396_11619729	Not Available	528	Open in IMG/M
3300021181\|Ga0210388_10643911	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300021420\|Ga0210394_10995477	Not Available	726	Open in IMG/M
3300021477\|Ga0210398_10596078	Not Available	897	Open in IMG/M
3300021478\|Ga0210402_10243952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1658	Open in IMG/M
3300022709\|Ga0222756_1058230	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300022716\|Ga0242673_1067975	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300025899\|Ga0207642_10534158	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300025913\|Ga0207695_11326057	Not Available	600	Open in IMG/M
3300025916\|Ga0207663_10065237	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300025918\|Ga0207662_10602191	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300025919\|Ga0207657_11442889	Not Available	516	Open in IMG/M
3300025927\|Ga0207687_10066469	All Organisms → cellular organisms → Bacteria → Acidobacteria	2562	Open in IMG/M
3300025936\|Ga0207670_10635161	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300025944\|Ga0207661_11965232	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300025960\|Ga0207651_12009324	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300025981\|Ga0207640_12011196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300026035\|Ga0207703_12410984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	502	Open in IMG/M
3300026095\|Ga0207676_10580499	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300027826\|Ga0209060_10016343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4031	Open in IMG/M
3300027869\|Ga0209579_10431379	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300027895\|Ga0209624_10305567	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300027905\|Ga0209415_10096533	All Organisms → cellular organisms → Bacteria → Acidobacteria	3275	Open in IMG/M
3300027905\|Ga0209415_10230716	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300027905\|Ga0209415_11018622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	548	Open in IMG/M
3300028800\|Ga0265338_10284998	Not Available	1206	Open in IMG/M
3300029915\|Ga0311358_10263686	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300029989\|Ga0311365_10968557	Not Available	735	Open in IMG/M
3300029999\|Ga0311339_10379719	Not Available	1482	Open in IMG/M
3300030007\|Ga0311338_10047715	All Organisms → cellular organisms → Bacteria → Acidobacteria	5742	Open in IMG/M
3300030339\|Ga0311360_11586184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	511	Open in IMG/M
3300030503\|Ga0311370_12272904	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031234\|Ga0302325_11070923	Not Available	1091	Open in IMG/M
3300031236\|Ga0302324_101935112	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031524\|Ga0302320_12057824	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031718\|Ga0307474_10561809	All Organisms → cellular organisms → Bacteria → Acidobacteria	897	Open in IMG/M
3300031820\|Ga0307473_10730333	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300031897\|Ga0318520_10283690	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300031910\|Ga0306923_11298535	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031962\|Ga0307479_11443391	Not Available	646	Open in IMG/M
3300032025\|Ga0318507_10173686	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300032055\|Ga0318575_10183221	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300032180\|Ga0307471_103700934	Not Available	541	Open in IMG/M
3300032515\|Ga0348332_13467374	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300032805\|Ga0335078_10183490	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300032892\|Ga0335081_12316532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300032895\|Ga0335074_11163510	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300032897\|Ga0335071_12051283	Not Available	515	Open in IMG/M
3300033158\|Ga0335077_10288113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1802	Open in IMG/M
3300033824\|Ga0334840_090978	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.90%
Host-Associated	Host-Associated	21.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.97%
Plants	Host-Associated → Plants	21.10%
Aquatic	Environmental → Aquatic	11.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.88%
Freshwater	Environmental → Aquatic → Freshwater	11.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.09%
Peat	Environmental → Terrestrial → Peat	9.17%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.61%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.09%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.59%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.75%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009239	Microbial communities of water from Amazon river, Brazil - RCM11	Environmental	Open in IMG/M
3300009254	Microbial communities of water from Amazon river, Brazil - RCM20	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088793

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017385211	3300000364	Soil	FSGKDRKTLYAVSRENATNKDWIIAIPMIAQGPKGRGK*
Ga0062386_1010848881	3300004152	Bog Forest Soil	VFGSDGKYLGLIPTPRGIISVAFSALDRKTLYAVARDNAQNKDWIIAIQMIALGPKGRGK
Ga0068966_14309952	3300004476	Peatlands Soil	PTPRGIISLAFSGPDRKTLYAVERENAENKDWIIAIQMIAQGPKGRGK*
Ga0062388_1014832491	3300004635	Bog Forest Soil	NLGLIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK*
Ga0070680_1008315033	3300005336	Corn Rhizosphere	GLIPTPRGLISVAFSGPDRKILYAVARENATNKDWIIGIQMISQGPKGRAK*
Ga0070673_1005265881	3300005364	Switchgrass Rhizosphere	YLGVIPTPRPVITVTFSGPDRKTLYAVSRENATNKDWIIAIPMIAQGPKGRGK*
Ga0070681_106605233	3300005458	Corn Rhizosphere	LGLIPTPRGLISVAFSGPDRKILYAVARENATNKDWIIGIQMISQGPKGRAK*
Ga0070731_101994391	3300005538	Surface Soil	TDGRNLGLIPTPRDVISVTFSGPDRKTLYAVSRDNAQNKDWIIALDMIAHGPKGRGK*
Ga0070733_106796862	3300005541	Surface Soil	DGKNLGVIPVPRDVISVTISGADHKTLYAVSRDTPLNKDWIIGIQLLAQGPKGRGK*
Ga0070686_1004033903	3300005544	Switchgrass Rhizosphere	VISPDGKNLGMIPTPRGTITVTFGGPDRKTLYAVARDNAIDKDWIIALPMIAQGAKPRGK
Ga0068857_1016856872	3300005577	Corn Rhizosphere	RPVITVTFSGKDRKTLYAVSRENATNKDWIIAIPMIAQGPKGRGK*
Ga0068854_1008263791	3300005578	Corn Rhizosphere	DRKMLYAVARENATNKDWIIGIPLIAQGPKGRGK*
Ga0070761_107160173	3300005591	Soil	KNLGVIPTPRGVITVTFSGPDRKTLYAVSRTGNTDWIIAIPMIAQGPKGRGK*
Ga0070702_1010072722	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	YLGVIPTPRPVISVTISGPDRKMLYAVSRDNATNKDWIIGLPLIAQGPKGRGK*
Ga0068852_1003824192	3300005616	Corn Rhizosphere	IPTPRPVITVTFSGKDRKTLYAVSRENATNKDWIIAIPMIAQGPKGRGK*
Ga0068852_1009665951	3300005616	Corn Rhizosphere	SATFSGPDRKTLYAVSRTGDTDWIIAIQMIAQGPKGRGK*
Ga0068864_1006026822	3300005618	Switchgrass Rhizosphere	GVIPTPRPVITVTFSGPDRKTLYAVARENATNKDWIIAIPMIAQGPKGRGK*
Ga0068858_1004665492	3300005842	Switchgrass Rhizosphere	LGVIPTPRPVITTTFSGPDRKTLYAVSRVGNTDWIIAIPMIAQGPKGRGK*
Ga0070766_104804412	3300005921	Soil	SGPDRHTLYAVSRDNAQNKDWIIALQMIAQGPKGRGK*
Ga0075522_102854772	3300006638	Arctic Peat Soil	VISVVFSGPDRKTLYAVSRDNAKNKDWIIAIQMIAQGPKGRGK*
Ga0079222_107050843	3300006755	Agricultural Soil	IPTPRNIISVAFSGPNRKTLYVVARDNAMNKDWILTIPMIAQGAKGRGK*
Ga0079222_111054341	3300006755	Agricultural Soil	PHPVISVAFSGPDRKVLYAVSRDNATNKDWIIAIQMISQGAKGRGK*
Ga0079220_119137791	3300006806	Agricultural Soil	SVAFSGPDRKTLYAVARDNAQNKDWIIAIPMLAQGPKGRGK*
Ga0068865_1007855941	3300006881	Miscanthus Rhizosphere	TFSGPDRKMLYAVSRDNALDKDWIIGIQMISQGPKDRGK*
Ga0073928_111966592	3300006893	Iron-Sulfur Acid Spring	GPDRKMLYAVARDNAQNKDWILAIQMIAQGPKGRGK*
Ga0105240_105139952	3300009093	Corn Rhizosphere	LGVIPTPRPVITVTFSGPDRKTLYAVSRTGNTDWIIAIPMLAQGPKGRGK*
Ga0105245_114150391	3300009098	Miscanthus Rhizosphere	TFSGPDRKTLYAVSRDNATNKDWIIGIQMIAQGPKGRGK*
Ga0105243_103974172	3300009148	Miscanthus Rhizosphere	ISGPDRKMLYAVSRDNATNKDWIIGLPLIAQGPKGRGK*
Ga0105241_105508234	3300009174	Corn Rhizosphere	YGLISVSFSGPDRKMLYAVARENSTNKDWIIGIQMIAQGPKGRAK*
Ga0103858_100944791	3300009239	River Water	YLGLIPTPRGIITVTFGGKDRKTMFVVARDNATNKDWILGIPTIAQGPKGRAK*
Ga0103867_10229063	3300009254	River Water	VISPEGKYLGLIPTPRGIITVTFGGKDRKTMFVVARDNATNKDWILGIPTIAQGPKGRAK
Ga0116222_10549284	3300009521	Peatlands Soil	RGIISVAFSGPDRKMLYAVSRDNAQNKDWIIGIQMIAQGPKGRGK*
Ga0126373_114811211	3300010048	Tropical Forest Soil	GPDRKTLYVVARDNPSDKDWILGIPMIAQGPKVRGK*
Ga0126370_110503481	3300010358	Tropical Forest Soil	NIISVAFSGPDRKTLYVVSRENALNKDWIIAIDMVAQGSKSRGK*
Ga0126378_126674022	3300010361	Tropical Forest Soil	LGLIPTPRGIISVAFSGPDRKTLYVVARDNPSDKDWILGIPMIAQGPKVRGK*
Ga0134128_105088433	3300010373	Terrestrial Soil	YLGMIPTPHPVISVAFSGPDRKVLYAVSRDNATNKDWIIAIQMISQGAKGRGK*
Ga0105239_105243873	3300010375	Corn Rhizosphere	VITVTFSGPDRKTLYAVSRTGNTDWIIAMPMIAQGPKGRGK*
Ga0126381_1041526092	3300010376	Tropical Forest Soil	PTPRGVISVAFSGPNRKTLYAVSRDNAQNKDWIIAIEMIAQGPKGRAK*
Ga0134124_102661483	3300010397	Terrestrial Soil	FSGPDRKVLYAVSRDNATNKDWIIAIQMISQGAKGRGK*
Ga0164305_112576322	3300012989	Soil	GKYLGVIPTPRPVITVTFSGKDRKTLYAVSRENATNKDWIIAIPMIAQGPKGRGK*
Ga0181521_105480411	3300014158	Bog	TSSGGIQVIGPDGNNLGVIPTPRGVITVTISGPDRRTLYAVSNNQRNDWIMTIPLLAQGPKGRGK*
Ga0181531_102784351	3300014169	Bog	TPRGVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIQTIAQGPKGRGK*
Ga0181537_102499241	3300014201	Bog	GPDRKTLYAVARDNAQNKDWIIAIEMLAQGPKGRAK*
Ga0181537_109667201	3300014201	Bog	PRDVISVAFSGPDRKTLYAVSRDNALNKDWIIAIQMIAQGPKGRGK*
Ga0075301_10832992	3300014262	Natural And Restored Wetlands	IGGPDRKMLYAVTRDNAQNKDWVIGIPLIAQGPRGRGK*
Ga0182018_103368772	3300014489	Palsa	RGLISVAFSGPDRRTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK*
Ga0182015_106112441	3300014495	Palsa	LGLIPTPRDVISVAFSGPERKTLYAVSRDNAENKDWIIAIEMVAQGPKGRGK*
Ga0181519_109789481	3300014658	Bog	GPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK*
Ga0157376_120814142	3300014969	Miscanthus Rhizosphere	VITVTFSGPDRKMLYAVSRTGDTDWIIGIPMIAQGPKGRGK*
Ga0182041_108029451	3300016294	Soil	GKVLGMIPTPRGVISVAFSGADRKTLYAVSRDNAQNKDWLIAIQMIAQGPKGRGK
Ga0182035_112143181	3300016341	Soil	VAFSGPDRKTLYAVSRDNAQNKDWIIAIPMLAQGPKGRGK
Ga0181520_108037451	3300017988	Bog	KNLGVIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK
Ga0187860_11984451	3300018014	Peatland	SGPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK
Ga0187883_106283822	3300018037	Peatland	PTPRDVISVAFSGPDRETLYAVSRDNAQNKDWIIAIPMIAQGPKGRGK
Ga0187784_115543891	3300018062	Tropical Peatland	LIPTPRDVISVAFSGPDRKTLYAVSRDKAQNKDWIIALQMVAQGPKGRGK
Ga0187800_14926872	3300019278	Peatland	ISLAFSGPDRKTLYAVERDNAENKDWIVAIPMIAQGPKGRGK
Ga0210403_112431552	3300020580	Soil	LGIIPAPHGVISVTFSGKDRKTLYAVGREGGNQAPGNKAIILAIQMIAQGPKGRGK
Ga0210401_109082772	3300020583	Soil	DGKNLGLIPTPRDVISVTFSGPDRKTLYAVSRDNAQNKDWIIAIQTIAQGPKGRGK
Ga0210405_112029211	3300021171	Soil	LIPTPRGIISVAFSGPDRKMLYAVSRDNAQNKDWIIAIQTIAQGPKGRGK
Ga0210396_116197291	3300021180	Soil	SGPDRKTLYAVSRDNAQNKDWIIAIETIAQGPKGRGK
Ga0210388_106439111	3300021181	Soil	PTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIETVAQGPKGRGK
Ga0210394_109954772	3300021420	Soil	PRPVLSVTFSGPGKKMLYAVSREGNSDWIIALPMITQGPKDRGK
Ga0210398_105960782	3300021477	Soil	SVTFSGSDRKMLYAVSRDNGQNKDWIIALEMLAQGPKGRGK
Ga0210402_102439521	3300021478	Soil	IPTPRGLISAAFSGPNGKMLYVVSRDNAQNKDWILGIQMISQGPKGRGK
Ga0222756_10582301	3300022709	Soil	LIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIETTAQGPKGRGK
Ga0242673_10679751	3300022716	Soil	ANLGLIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIEMIAQGPKGRGK
Ga0207642_105341583	3300025899	Miscanthus Rhizosphere	IPTPRPVITVTFSGKDRKTLYAVSRDNATNKDWIIAIPMIAQGPKGRGK
Ga0207695_113260571	3300025913	Corn Rhizosphere	VTFSGPDRKTLYAVSRTGNTDWIIAIPMLAQGPKGRGK
Ga0207663_100652371	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GKYLGLIPTPRGIISVAFSGQDRKTLYAVARDNAQNRDWIIAIQMIAQGPKGRAK
Ga0207662_106021912	3300025918	Switchgrass Rhizosphere	YVTAQAAGIQVFDPTGKYLGVIPTPRPVISVTISGPDRKMLYAVSRDNATNKDWIIGLPLIAQGPKGRGK
Ga0207657_114428891	3300025919	Corn Rhizosphere	GVITVTFSGKDKKTLYAVGREGGNTAPGNKAIIMTIPMIAQGPKGRGK
Ga0207687_100664692	3300025927	Miscanthus Rhizosphere	MIPTPRGTITVTFGGPDRKTLYAVARDNAMDRDWIIALPMIAQGAKPRGK
Ga0207670_106351612	3300025936	Switchgrass Rhizosphere	VITTTFSGPDRKTLYAVSRTGNTDWIIAIPMIAQGPKGRGK
Ga0207661_119652322	3300025944	Corn Rhizosphere	TPRGIISAAFSGKDRKILYVVSRDNAQDKDWIIGIQMIAQGPKGRAK
Ga0207651_120093242	3300025960	Switchgrass Rhizosphere	RAVITTTFSGPDRKTLYAVSRTGNTDWIIAIPMIAQGPKGRGK
Ga0207640_120111961	3300025981	Corn Rhizosphere	ATFSGPDRKTLYAVSRTGDTDWIIAIQMIAQGPKGRGK
Ga0207703_124109842	3300026035	Switchgrass Rhizosphere	AGIQVIGPDGKNLGVIPTPRGVISVTFSGPDRKMLYAVSRDNALDKDWIIGIQMISQGPKDRGK
Ga0207676_105804992	3300026095	Switchgrass Rhizosphere	GVIPTPRPVITVTFSGPDRKTLYAVARENATNKDWIIAIPMIAQGPKGRGK
Ga0209060_100163437	3300027826	Surface Soil	PRGLISVAFSGPNRKMLYVVSRDNAQDKDWILGIQMISQGPKGRGK
Ga0209579_104313791	3300027869	Surface Soil	GTDGRNLGLIPTPRDVISVTFSGPDRKTLYAVSRDNAQNKDWIIALDMIAHGPKGRGK
Ga0209624_103055671	3300027895	Forest Soil	NLGLIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIETIAQGPKGRGK
Ga0209415_100965333	3300027905	Peatlands Soil	SGPDRKTLYAVSNNQRNDWIMTIPLLAQGPKGRGK
Ga0209415_102307161	3300027905	Peatlands Soil	SGPDRKTLYAVSNNQRNDWIMTIPLMAQGPKGRGK
Ga0209415_110186222	3300027905	Peatlands Soil	IPTPRNILSVTFSGPDRKMLYGVSREGDKDWIIGIQMIAQGPKGRGK
Ga0265338_102849982	3300028800	Rhizosphere	TPRGVITVTFSGPDRKTLYAVSRTGNTDWIIAIPMIAQGPKGRGK
Ga0311358_102636861	3300029915	Bog	PRGVISLAFSGPDRKTLYAVGRDGANNQDWILSIKTIAQGAKGRGK
Ga0311365_109685572	3300029989	Fen	LGVIPTPRPVITTTFSGPDRKTLYAVSRVGNTDWIISIPMIAQGPKGRGK
Ga0311339_103797191	3300029999	Palsa	RDVISVAFSGPDRKTLYAVSRDGAQNKDWIIAIETIAQGPKGRGK
Ga0311338_100477158	3300030007	Palsa	VISVTFSGPDRKMLYAVSRDNGQNKDWIIALEMIAQGPKGRGK
Ga0311360_115861841	3300030339	Bog	FSGPGRKTLYAVVRENATNKDWIISIPMLAQGAKGRGK
Ga0311370_122729042	3300030503	Palsa	TPRDVISVTFSGPDRKMLYAVSRDNGQNKDWIIALEMIAQGPKGRGK
Ga0302325_110709231	3300031234	Palsa	AFSGPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK
Ga0302324_1019351122	3300031236	Palsa	PAPRAVLSITFSGADRKMLYAVARDTPQNKDWIIAIQTIAQGPKGRAK
Ga0302320_120578241	3300031524	Bog	GSIPTPRGVISVAFSGPDRKVLYAVSRDNAQNKDWIIALQMIAQGPKGRGK
Ga0307474_105618092	3300031718	Hardwood Forest Soil	PDRKTLYAVSRDNAQNKDWIIAIPMIAQGPKGRGK
Ga0307473_107303332	3300031820	Hardwood Forest Soil	STNPGVQIIAPDGKYLGLIPTPRGIISLAFSGTNRNVLYAVARDNVQNKDWILAISTMSQGPKGRGK
Ga0318520_102836903	3300031897	Soil	GPDRKTLYAVSRDNAQNKDWIIAIPMLAQGPKGRGK
Ga0306923_112985352	3300031910	Soil	KYLGLIPTPRGVISVAFSGTDRKTLYAVSRDNAQNKDWIIAIKMLSQGPKGRGK
Ga0307479_114433913	3300031962	Hardwood Forest Soil	PRPVITVTISGPDRKTLYAVNNDQRNDVIMTITLIAQGPKGRGK
Ga0318507_101736863	3300032025	Soil	IISVAFSGPDRKTLYAVSRDNAQNKDWIIAIPMLAQGPKGRGK
Ga0318575_101832211	3300032055	Soil	SGPDRKTLYAVSRDNAQNKDWIIAIPMLAQGPKGRGK
Ga0307471_1037009341	3300032180	Hardwood Forest Soil	PRDVISVAFSWPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK
Ga0348332_134673741	3300032515	Plant Litter	GTNLGLIPTPRDVISVAFSGPDRKTLYAVSRDNAQNKDWIIAIKMNAQGPKGRGK
Ga0335078_101834904	3300032805	Soil	LGLIPTPRGLISVAFSGPNRKMLYAVSRDNAQNRDWIIAIQTIAQGPKGRGK
Ga0335081_123165321	3300032892	Soil	GIISVAFSGPDRKTLYAVSRDNAQNKDWIIAIQMIAQGPKGRGK
Ga0335074_111635101	3300032895	Soil	GLIPTPRDVISVAFSGPGRKTLYAVSRDNAQNKDWIIALPMIAQGPKGRGK
Ga0335071_120512831	3300032897	Soil	GIISVAFSGPDRKTLYAVARENVQNKDWILAIQTIAQGPKGRGK
Ga0335077_102881133	3300033158	Soil	GVISVAFSGPNRKTLYAVSRDNAQNKDWIIAIPMLAQGPKGRGK
Ga0334840_090978_2_115	3300033824	Soil	AFSGKDRKTLYAVERQGADDWIISIPMIAQGPKGRGK

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign