Metagenome Family F088780

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088780
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	MNIFKKIERGLTALAMAPLSGLEKKERERRLEERLKRSEQKHSHN
Number of Associated Samples	68
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.91 %
% of genes near scaffold ends (potentially truncated)	15.60 %
% of genes from short scaffolds (< 2000 bps)	78.90 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.798 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland (20.183 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.532 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.90% β-sheet: 0.00% Coil/Unstructured: 41.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00291	PALP	1.83
PF13240	zinc_ribbon_2	1.83
PF02245	Pur_DNA_glyco	1.83
PF13450	NAD_binding_8	1.83
PF00717	Peptidase_S24	0.92
PF14378	PAP2_3	0.92
PF09674	DUF2400	0.92
PF01391	Collagen	0.92
PF07690	MFS_1	0.92
PF14791	DNA_pol_B_thumb	0.92
PF02659	Mntp	0.92
PF01965	DJ-1_PfpI	0.92
PF13086	AAA_11	0.92
PF04304	DUF454	0.92
PF03372	Exo_endo_phos	0.92
PF02566	OsmC	0.92
PF00011	HSP20	0.92
PF14947	HTH_45	0.92
PF00535	Glycos_transf_2	0.92
PF02156	Glyco_hydro_26	0.92
PF01243	Putative_PNPOx	0.92
PF07362	CcdA	0.92
PF00903	Glyoxalase	0.92
PF13020	NOV_C	0.92
PF04055	Radical_SAM	0.92
PF01037	AsnC_trans_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	1.83
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.92
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.92
COG1971	Putative Mn2+ efflux pump MntP	Inorganic ion transport and metabolism [P]	0.92
COG2832	Uncharacterized membrane protein YbaN, DUF454 family	Function unknown [S]	0.92
COG4124	Beta-mannanase	Carbohydrate transport and metabolism [G]	0.92
COG5302	Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
All Organisms	root	All Organisms	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
cellular organisms	root	All Organisms → cellular organisms	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	35.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	19.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	15.60 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.92 %
Fibrobacteres	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	13.76 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	0.92 %
Fibrobacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	13.76 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	0.92 %
Fibrobacterales	order	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	13.76 %
Fibrobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae	0.92 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	13.76 %
Fibrobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter	0.92 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	13.76 %
unclassified Fibrobacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter	0.92 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	13.76 %
Fibrobacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	0.92 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000317\|WSSedL2TaDRAFT_1038070	Not Available	533	Open in IMG/M
3300000894\|WSSedL1B2DRAFT_1010700	All Organisms → cellular organisms → Archaea	797	Open in IMG/M
3300001213\|JGIcombinedJ13530_100957953	Not Available	512	Open in IMG/M
3300001213\|JGIcombinedJ13530_101900791	Not Available	1203	Open in IMG/M
3300001213\|JGIcombinedJ13530_105203308	Not Available	1108	Open in IMG/M
3300001213\|JGIcombinedJ13530_105946481	Not Available	1303	Open in IMG/M
3300001213\|JGIcombinedJ13530_106172436	Not Available	813	Open in IMG/M
3300001213\|JGIcombinedJ13530_107108861	Not Available	712	Open in IMG/M
3300001213\|JGIcombinedJ13530_110308607	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	972	Open in IMG/M
3300001547\|JGI20215J15232_1014420	All Organisms → cellular organisms → Archaea	1117	Open in IMG/M
3300001547\|JGI20215J15232_1059163	Not Available	505	Open in IMG/M
3300002961\|JGI11641J44799_10007597	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3282	Open in IMG/M
3300002961\|JGI11641J44799_10032022	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1550	Open in IMG/M
3300003432\|JGI20214J51088_10063530	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2579	Open in IMG/M
3300003432\|JGI20214J51088_10095216	Not Available	2095	Open in IMG/M
3300003432\|JGI20214J51088_10305388	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1087	Open in IMG/M
3300003432\|JGI20214J51088_10329546	All Organisms → cellular organisms → Bacteria → Acidobacteria	1036	Open in IMG/M
3300003432\|JGI20214J51088_11185103	Not Available	502	Open in IMG/M
3300003541\|JGI20214J51650_10166933	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1513	Open in IMG/M
3300004072\|Ga0055512_10046975	Not Available	756	Open in IMG/M
3300004078\|Ga0055513_10024189	Not Available	1113	Open in IMG/M
3300004282\|Ga0066599_100785422	All Organisms → cellular organisms → Archaea	667	Open in IMG/M
3300005208\|Ga0069003_10042549	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	748	Open in IMG/M
3300005217\|Ga0069005_10163371	Not Available	604	Open in IMG/M
3300006640\|Ga0075527_10132135	Not Available	700	Open in IMG/M
3300006950\|Ga0075524_10000146	All Organisms → cellular organisms → Archaea	14769	Open in IMG/M
3300006950\|Ga0075524_10049512	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1737	Open in IMG/M
3300006950\|Ga0075524_10124190	All Organisms → cellular organisms → Archaea → TACK group	1112	Open in IMG/M
3300006950\|Ga0075524_10160825	Not Available	974	Open in IMG/M
3300007896\|Ga0111484_1041545	All Organisms → cellular organisms → Archaea	951	Open in IMG/M
3300007906\|Ga0111482_1008702	All Organisms → cellular organisms → Archaea	2057	Open in IMG/M
3300007907\|Ga0111546_105534	All Organisms → cellular organisms → Archaea	1166	Open in IMG/M
3300009029\|Ga0066793_10325741	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	886	Open in IMG/M
3300009053\|Ga0105095_10107154	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1517	Open in IMG/M
3300009091\|Ga0102851_11428661	Not Available	769	Open in IMG/M
3300009179\|Ga0115028_10734128	Not Available	759	Open in IMG/M
3300009179\|Ga0115028_10754714	Not Available	751	Open in IMG/M
3300009406\|Ga0116587_1061072	All Organisms → cellular organisms → Archaea	641	Open in IMG/M
3300010379\|Ga0136449_100227574	Not Available	3497	Open in IMG/M
3300012931\|Ga0153915_10191014	Not Available	2243	Open in IMG/M
3300012931\|Ga0153915_12334146	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	626	Open in IMG/M
3300014153\|Ga0181527_1109744	Not Available	1277	Open in IMG/M
3300014490\|Ga0182010_10261573	Not Available	922	Open in IMG/M
3300014490\|Ga0182010_10751216	Not Available	551	Open in IMG/M
3300014498\|Ga0182019_10067921	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2106	Open in IMG/M
3300014498\|Ga0182019_10779307	Not Available	683	Open in IMG/M
3300014502\|Ga0182021_10014515	All Organisms → cellular organisms → Archaea	9357	Open in IMG/M
3300014502\|Ga0182021_10060388	Not Available	4408	Open in IMG/M
3300014502\|Ga0182021_10135690	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2860	Open in IMG/M
3300014502\|Ga0182021_10149212	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2721	Open in IMG/M
3300014502\|Ga0182021_10267587	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2006	Open in IMG/M
3300014502\|Ga0182021_10719259	All Organisms → cellular organisms → Archaea	1198	Open in IMG/M
3300014502\|Ga0182021_10813500	Not Available	1122	Open in IMG/M
3300014502\|Ga0182021_10977055	Not Available	1019	Open in IMG/M
3300014502\|Ga0182021_12310870	Not Available	647	Open in IMG/M
3300014502\|Ga0182021_13533259	Not Available	520	Open in IMG/M
3300014839\|Ga0182027_10127953	All Organisms → cellular organisms → Archaea	3018	Open in IMG/M
3300014839\|Ga0182027_10838043	Not Available	958	Open in IMG/M
3300017925\|Ga0187856_1088016	All Organisms → cellular organisms → Archaea	1259	Open in IMG/M
3300017939\|Ga0187775_10077902	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1072	Open in IMG/M
3300017966\|Ga0187776_11250109	Not Available	559	Open in IMG/M
3300017974\|Ga0187777_10980317	Not Available	611	Open in IMG/M
3300017996\|Ga0187891_1273656	Not Available	556	Open in IMG/M
3300018009\|Ga0187884_10269044	Not Available	692	Open in IMG/M
3300018016\|Ga0187880_1468028	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
3300018018\|Ga0187886_1085859	Not Available	1343	Open in IMG/M
3300018019\|Ga0187874_10275043	Not Available	687	Open in IMG/M
3300018062\|Ga0187784_10293700	Not Available	1320	Open in IMG/M
3300018085\|Ga0187772_10136745	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1610	Open in IMG/M
3300018086\|Ga0187769_10179026	Not Available	1563	Open in IMG/M
3300018086\|Ga0187769_10865499	Not Available	683	Open in IMG/M
3300018088\|Ga0187771_11119243	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	668	Open in IMG/M
3300018090\|Ga0187770_10069983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2568	Open in IMG/M
3300018090\|Ga0187770_11586353	Not Available	534	Open in IMG/M
3300019082\|Ga0187852_1156312	Not Available	964	Open in IMG/M
3300025582\|Ga0209386_1032652	Not Available	953	Open in IMG/M
3300025888\|Ga0209540_10666331	Not Available	513	Open in IMG/M
3300025891\|Ga0209585_10019248	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	2470	Open in IMG/M
3300025891\|Ga0209585_10092311	Not Available	1142	Open in IMG/M
3300025891\|Ga0209585_10301354	Not Available	642	Open in IMG/M
3300025891\|Ga0209585_10396063	Not Available	564	Open in IMG/M
3300026026\|Ga0210129_1045776	All Organisms → cellular organisms → Archaea	799	Open in IMG/M
3300026350\|Ga0256823_1005390	All Organisms → cellular organisms → Archaea	978	Open in IMG/M
3300027731\|Ga0209592_1133655	All Organisms → cellular organisms → Archaea → TACK group	896	Open in IMG/M
3300027887\|Ga0208980_10049828	All Organisms → cellular organisms → Archaea	2438	Open in IMG/M
3300027887\|Ga0208980_10110573	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300027887\|Ga0208980_10226645	All Organisms → cellular organisms → Archaea	1089	Open in IMG/M
3300027896\|Ga0209777_10090563	Not Available	2629	Open in IMG/M
3300027896\|Ga0209777_10542441	Not Available	851	Open in IMG/M
3300027896\|Ga0209777_10641062	All Organisms → cellular organisms → Archaea → TACK group	763	Open in IMG/M
3300027896\|Ga0209777_10713859	Not Available	712	Open in IMG/M
3300027896\|Ga0209777_10767682	All Organisms → cellular organisms → Archaea	679	Open in IMG/M
3300027900\|Ga0209253_10146746	Not Available	1911	Open in IMG/M
3300027905\|Ga0209415_10800346	Not Available	657	Open in IMG/M
3300028060\|Ga0255359_115089	Not Available	747	Open in IMG/M
3300030055\|Ga0302173_10350193	Not Available	563	Open in IMG/M
3300030114\|Ga0311333_11796154	Not Available	533	Open in IMG/M
3300031539\|Ga0307380_11429091	All Organisms → cellular organisms → Archaea → TACK group	520	Open in IMG/M
3300032829\|Ga0335070_10419838	Not Available	1277	Open in IMG/M
3300032893\|Ga0335069_12433842	Not Available	543	Open in IMG/M
3300033408\|Ga0316605_12336838	Not Available	520	Open in IMG/M
3300033487\|Ga0316630_11871382	Not Available	549	Open in IMG/M
3300033557\|Ga0316617_100009972	Not Available	4310	Open in IMG/M
3300034128\|Ga0370490_0020512	All Organisms → cellular organisms → Bacteria	2218	Open in IMG/M
3300034169\|Ga0370480_0089292	Not Available	1064	Open in IMG/M
3300034195\|Ga0370501_0051293	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	51.38%
Terrestrial	Environmental → Terrestrial	48.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.87%
Freshwater	Environmental → Aquatic → Freshwater	23.85%
Marine	Environmental → Aquatic → Marine	23.85%
Sediment	Environmental → Aquatic → Sediment	3.67%
Peat	Environmental → Terrestrial → Peat	2.75%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	33.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	23.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.93%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.83%
Pond	Environmental → Aquatic → Freshwater → Pond	0.92%
Clay	Environmental → Terrestrial → Soil → Clay	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	20.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	17.43%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.34%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.92%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	20.18%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	14.68%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	10.09%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.42%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	5.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.59%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.67%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	3.67%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.83%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.83%
Wetland	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Wetland	1.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000030	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk	Environmental	Open in IMG/M
3300000317	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule	Environmental	Open in IMG/M
3300000894	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001547	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site C1 Bulk	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004072	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2	Environmental	Open in IMG/M
3300004078	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300005208	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2	Environmental	Open in IMG/M
3300005217	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007896	Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_3	Environmental	Open in IMG/M
3300007906	Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_1	Environmental	Open in IMG/M
3300007907	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009406	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1 SPAdes	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300025582	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026350	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU6	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028060	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T25	Environmental	Open in IMG/M
3300030055	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_1	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedB1B_0323332	3300000030	Wetland	MEAKCFTNSLKKIERGLTALAIAPLSGLENKERDRRLEERLKRLDEKHSNK*
WSSedL2TaDRAFT_10380702	3300000317	Wetland	LNALKKIERGLTALALAPLSGLEKKERNRRIEERLKRSEQKYRHN*
WSSedL1B2DRAFT_10107002	3300000894	Wetland	EKYFMNLLRKIERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKHNRN*
JGIcombinedJ13530_1009579531	3300001213	Wetland	MNFIKKFGRGLSALALAPLSGLERKECNRRLEERLKRIEQKQRFN*
JGIcombinedJ13530_1019007912	3300001213	Wetland	MKSIKKIERGLAALAMAPLVGLEKKERSRRLEERLKRSEQKHNQN*
JGIcombinedJ13530_1052033082	3300001213	Wetland	MNALKKIGRTFSILAIASFSGLENKERNRRLEERLKRSEEKRKKV*
JGIcombinedJ13530_1059464814	3300001213	Wetland	MNLFMKIERGLTVLALAPLSGLEKKARDRVLEERLKRLEQKYVYK*
JGIcombinedJ13530_1061724361	3300001213	Wetland	MPKLFRKVSRGLTALAMAPLVDLENRKRDRRLEERIRRLEQRKISA*
JGIcombinedJ13530_1071088612	3300001213	Wetland	MNLFRKIGRGLTVFAMAPLVGLETKERDRRLKERLKRCEEKRSNYAKT*
JGIcombinedJ13530_1103086071	3300001213	Wetland	NLFRKIERGLTALAIAPLMGLERKGRDRKCEERIKRLEQKRNRNN*
JGI20215J15232_10144201	3300001547	Wetland	KYLNLLRKIERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKHNRN*
JGI20215J15232_10591631	3300001547	Wetland	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRSXXXXNSFN*
JGI11641J44799_100075972	3300002961	Wetland	MNLLRKIERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKHNRN*
JGI11641J44799_100320221	3300002961	Wetland	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRSQRKHNNFN*
JGI20214J51088_100635305	3300003432	Wetland	MNLVKKLERSLAVIAMAPLVGLESKERERRLEERLKRSQQRHNFN*
JGI20214J51088_100952163	3300003432	Wetland	VNSLKRIERGLTALALAPLSGLEKKERNRRLEERLKRSEQKYRHN*
JGI20214J51088_103053882	3300003432	Wetland	MNSLKXIERGLTALALAPLSGLEKKERNRRIEERVKRSEQKYRHN*
JGI20214J51088_103295462	3300003432	Wetland	MNLFKKIERGLTALAIAPLSGLERKERDRRLEERLRRLEQKQSYN*
JGI20214J51088_111851031	3300003432	Wetland	MNLVKKLERSLTVIAMAPLVGLESKERERRLEERLKRSRQRHNFN*
JGI20214J51650_101669331	3300003541	Wetland	MNSLKRIERGLTALALAPLSGLEKKERNRRIEERVKRSEQKYRHN*
Ga0055512_100469751	3300004072	Natural And Restored Wetlands	MNSLKRIERGLTALALAPLSGLEKKERNRRIEERVKRSEQKYRHN*EKI
Ga0055513_100241891	3300004078	Natural And Restored Wetlands	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRSRQRHNSFN*
Ga0066599_1007854221	3300004282	Freshwater	NLLRKIERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKHNRN*
Ga0069003_100425492	3300005208	Natural And Restored Wetlands	MNSLKRIERGLTALALAPLSGLEKKERNRRIEERVKRSEQKYRHK*
Ga0069005_101633711	3300005217	Natural And Restored Wetlands	VNSLKRIERGLTALALAPLSGLEKKERNRRLEERLKRSEQKHGHK*
Ga0075527_101321351	3300006640	Arctic Peat Soil	MKSFKKIERGLTALAVAPLSGLEKKERDRRLEERLKRSEQKQSHK*
Ga0075524_100001469	3300006950	Arctic Peat Soil	VNSVKKFKRGITALSIAPLSRLEKKERDGRLDERLKRLEQKQNK*
Ga0075524_100495121	3300006950	Arctic Peat Soil	MSEAKYFMKSFKKIERGLTALAMAPLSGLEKKGRDRRLEERLKRSEQKQSHK*
Ga0075524_101241902	3300006950	Arctic Peat Soil	MNLLKKIGRSLSAIALTPFSGLENRERNRRLEERLKRSEEKQKKL*
Ga0075524_101608252	3300006950	Arctic Peat Soil	MNALKKIERSLTALALAPLSGLEKKERDRRLEERLKRSEQKHNHK*
Ga0111484_10415452	3300007896	Sediment	MNLIKKFTRGLTVVAMAPLCGLENKERNRRLEERLKRIENRDLA*
Ga0111482_10087022	3300007906	Sediment	MNLIKKFTWGLTVVAMAPLCGLENKERNRRLEERLKRIENRDLA*
Ga0111546_1055342	3300007907	Sediment	MNLIKKFTWGLTVVAMAPLCGLENKERNRRLEDRLKRIENRDLA*
Ga0066793_103257412	3300009029	Prmafrost Soil	MNLFRKIWRGLTALAMAPLSGLETRERDRRFEERLKRCEEKQKHLNSANN*
Ga0105095_101071541	3300009053	Freshwater Sediment	MNLFRKIERGLTVLAIAPLSGLEKKERNRKLEERLKRLEQKQSYK*
Ga0102851_114286611	3300009091	Freshwater Wetlands	MNLIKKMSRNLGALAMAPLVSLERKERERRLEERYKRIKKKEP*
Ga0115028_107341281	3300009179	Wetland	LANLFKKLGRGLTALAMAPLVGLEKKETQRRIEERIKRSEQKIKRS*
Ga0115028_107547141	3300009179	Wetland	MNLFRKIERGLTALAIAPLMGLEKKGRDRKCEERLKRLEQQRKRYN*
Ga0116587_10610721	3300009406	Sediment	MNLIKKFTRGLTVVAMAPLCGLENKERNRRLEERLK
Ga0116108_11999582	3300009519	Peatland	LDEKGERLFTNLLQRIRRGLLVLAIAPFYWLEKKELERKLEERLKRSEQK
Ga0136449_1002275741	3300010379	Peatlands Soil	MNFFKKIERDLTVFAMAPLVELERRERERRLEERLKGSEEKH
Ga0153915_101910144	3300012931	Freshwater Wetlands	MKLFKKIGRSLTVLALAPLSGLETRERDRRLEERLKRFEEKQKRLS*
Ga0153915_123341461	3300012931	Freshwater Wetlands	MKLIKRIERGLVVLAMAPLVGLERKERDRRLEERLKRAEQRNK*
Ga0181527_11097443	3300014153	Bog	MNLFKKVVRGFTVLAMAPLSGLERKERDRRLEERLKRIEEKQGRK*
Ga0182010_102615731	3300014490	Fen	VNSLKKIERGLTALAMAPLSGLEKKERERRLEERLKRSEQKHRNN*
Ga0182010_107512161	3300014490	Fen	MNLIKKIGRDFSVLAMAPLVGLERKERERRLDERLKRSEQKYSKN*
Ga0182019_100679213	3300014498	Fen	MNLFRKFERGLTALAIAPFSGLEKKERDRRLEERLKRSEEKHGSK*
Ga0182019_107793071	3300014498	Fen	VNSLKKIERGLTALAMAPLAGLEKKERERRLEERLKRSEQKHRNN*
Ga0182021_100145153	3300014502	Fen	VNSLKKIERALTTIAIAPLSGLEKKERDRRLEERLKRLEQKSRRN*
Ga0182021_100603883	3300014502	Fen	MNLLKKIGRALTVVAIAPLSGLENKGRNRKLEERLKHLEEKNRFA*
Ga0182021_101356901	3300014502	Fen	VNSLKKIEQGLTALAMAPLAGLEKKERERRLEERLKRSEQKHR
Ga0182021_101492122	3300014502	Fen	MNLFKKIERELSVLAMSPLVGLEKKERERRLEERLKRSEQKYSKR*
Ga0182021_102675873	3300014502	Fen	MNILRKIGHGLTALAMAPLSRLETRERNRRFKERLKRCEEKQ
Ga0182021_107192591	3300014502	Fen	MKSIKKIERGLAALAMAPLVGLEKKERSRRLEERLKRSEQKHIQN*
Ga0182021_108135002	3300014502	Fen	MNLFKKIERSLTILAMAPLVGLEGRERERKLEERLKRSRQRHNFN*
Ga0182021_109770552	3300014502	Fen	MNLFKKIERNLTILAMAPLVGLEGREREKRLEERLKRSRQRHNFN*
Ga0182021_123108702	3300014502	Fen	MNLLRKIERGLTALAMAPLSGLDTRERDRRIEERIKRYEEKQKHLHSANN*
Ga0182021_135332592	3300014502	Fen	MNLFKKIERGFTVLAMAPLVGLEKKERERRLEERFKRLAQKHIQN*
Ga0182027_101279535	3300014839	Fen	MNIFKKIERGLTALAMAPLSGLEKKERERRLEERLKRSEQKHSHN*
Ga0182027_108380431	3300014839	Fen	MFTNLFKKIERGLTVLAMAPLSGLEKKERERKLEERLKRSEEKHSRN
Ga0187856_10880161	3300017925	Peatland	MNLFKKIGRGLTAVAMAPLYELEKKERERKLEERLKRAQKSRVASER
Ga0187775_100779022	3300017939	Tropical Peatland	MKLFKRIERGFLSFALTPFYRLEIKERNRRLEERVKRSLQKQKRL
Ga0187776_112501091	3300017966	Tropical Peatland	MNSLRKFGRNLTALAIAPLSMLEEKEKRRRLDERLRRSEQKGKH
Ga0187777_109803172	3300017974	Tropical Peatland	MNVFRKIGRGLTVLAIAPLSELEKRERDRRLAERIKHLEEKNRFA
Ga0187891_12736561	3300017996	Peatland	MNLFKKIERGLTVLALTPLSELERKERERRLEERLKRCEE
Ga0187884_102690441	3300018009	Peatland	LNFFKRIERDLTVFAMAPLVELERKERERRLEERLKRSEQKHSSNN
Ga0187880_14680281	3300018016	Peatland	MNLLKKIERDLTVLAMSPMVELEKKERERKLDERLKRIEQKHDLK
Ga0187886_10858594	3300018018	Peatland	MNLFRKIERGLTALAMAPLVGLEKKERERILEERLKRSEEKHGCK
Ga0187874_102750432	3300018019	Peatland	MNFFKKIERSFTVLAMAPLVELERKERERRLEERLKRSEQKHGNN
Ga0187784_102937002	3300018062	Tropical Peatland	MNFLKKIGRSLTALAIAPLSGLEENERRRRLDERLKRLEQKQKHCTLAHS
Ga0187772_101367451	3300018085	Tropical Peatland	MNFFKKVERELAALVIAPFYGLERKERERRLEERLKRSGQKKKH
Ga0187769_101790261	3300018086	Tropical Peatland	MNFFKKVERELAALVIAPFYGLERKERERRLEERLKRSEQKKNQ
Ga0187769_108654991	3300018086	Tropical Peatland	MNFLKKIGRSLTALAVAPLSGLEEKERRKRLDERLKRD
Ga0187771_111192432	3300018088	Tropical Peatland	MNFFKKVERELAALAIAPLSGLERKERERRLEERLKRSGQKKKH
Ga0187770_100699834	3300018090	Tropical Peatland	MNLFKRIEQGLTTLAMAPLSELEKKERKRRLEERLKRIEEKQDHK
Ga0187770_115863531	3300018090	Tropical Peatland	MNFLKKIGRSLTALAIAPLSGLEEKERRRRLDERLKRLEQKQKH
Ga0187852_11563121	3300019082	Peatland	MNLFKKVVRGFTVLAMAPLSGLERKERDRILEERLKRLEQKQKHSARA
Ga0209386_10326521	3300025582	Arctic Peat Soil	MNALKKIERSLTALALAPLSGLEKKERDRRLEERLKRSEQKHNHK
Ga0209540_106663311	3300025888	Arctic Peat Soil	MNLFRKIERGLTALAIAPLSGLEKKERDRRLEERLKRLEQKHKCN
Ga0209585_100192481	3300025891	Arctic Peat Soil	VNSVKKFKRGITALSIAPLSRLEKKERDGRLDERLKRLEQKQNK
Ga0209585_100923111	3300025891	Arctic Peat Soil	MSEAKYFMKSFKKIERGLTALAMAPLSGLEKKGRDRRLEERLKRSEQKQSHK
Ga0209585_103013542	3300025891	Arctic Peat Soil	MNLLKKIGRSLSAIALTPFSGLENRERNRRLEERLKRSEEKQKKL
Ga0209585_103960632	3300025891	Arctic Peat Soil	MNALKKIERSLTALALAPLSGLEKKERDRRLEERLKRSEQKHNPK
Ga0210129_10457761	3300026026	Natural And Restored Wetlands	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRSRQRHNSFN
Ga0256823_10053901	3300026350	Sediment	MNLLRKIERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKRNRN
Ga0209592_11336551	3300027731	Freshwater Sediment	MNLFRKIERGLTVLAIAPLSGLEKKERNRKLEERLKRLEQKQSYK
Ga0208980_100498283	3300027887	Wetland	IERGLTVLALAPLSGLEKKERDRRLDERLRRLEQKHNRN
Ga0208980_101105733	3300027887	Wetland	NALKKIERGLTALALAPLSGLEKKERNRRIEERLKRSEQKYRHN
Ga0208980_102266451	3300027887	Wetland	MNLFKKIERSLTILAMAPLVGLEGRERARRLEERLKRSQRKHNNFN
Ga0208980_104359351	3300027887	Wetland	MNYFRKIERGLTALALVPFSNLETKERKRRLDERLMRLEQRQKDHEQRNKK
Ga0209777_100905635	3300027896	Freshwater Lake Sediment	MNVFKKIERGITVLAMAPLFELEKKEREKRLEERLKRCKEK
Ga0209777_105424412	3300027896	Freshwater Lake Sediment	MNFFKKIERSFTVLAMAPLVGLEKKERERRLEERLKRAEQKHRSN
Ga0209777_106410622	3300027896	Freshwater Lake Sediment	MNLLKKIGRTFSILAIASFSGLENKERNRRLEERLKRSEEKRKKV
Ga0209777_107138591	3300027896	Freshwater Lake Sediment	MNSLKKIERGLTVVAMAPFVGLEKKERERRLDERLKRLENKSIVSSEG
Ga0209777_107676821	3300027896	Freshwater Lake Sediment	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRLQQKHNFN
Ga0209253_101467464	3300027900	Freshwater Lake Sediment	MNLFRKIGRGITVLAIVPLSGLEKKERDRRLDERLKRLEQKEKNLCSNNS
Ga0209415_108003461	3300027905	Peatlands Soil	MNFFKKIERDLTIFAMAPLVELERKERERRLEERLKGREE
Ga0255359_1150891	3300028060	Soil	VNSLKKIEQGLTALAMAPLAGLEKKERDRRLEERLKRSEQKHGHD
Ga0302173_103501931	3300030055	Fen	VNSLKKIERALTTIAIAPLSGLEKKERDRRLEERLKRLEQKSRRN
Ga0311333_117961541	3300030114	Fen	MVMSLFRKIRRRLTVIAMAPLSGLENKQRNRKLEERLKRSEQKNSYR
Ga0307380_114290911	3300031539	Soil	MNLFRKIERSLTAFVMAPLSGLEKRERDRRLEERLKRSEQKRSKIENFVS
Ga0335070_104198382	3300032829	Soil	MKRIVKIERFLTALAMAPLVQLEHRERERKLEERLKRAQHKYE
Ga0335069_124338422	3300032893	Soil	MNLFKKIERSLTILAMAPLVGLEGRERERRLEERLKRSRQKHNDFN
Ga0316605_123368381	3300033408	Soil	GLTVLALAPLVGLEKKARDRVLEERLKRLEQKHVYK
Ga0316630_118713822	3300033487	Soil	MNLFKKIERGFTVLALTPLVGLEHRERERRIEERLKRLQQKHNFN
Ga0316617_1000099723	3300033557	Soil	MNLIKKMSRNLGALAMAPLVSLERKERERRLEERYKRIKKKEP
Ga0370490_0020512_1192_1305	3300034128	Untreated Peat Soil	MSRNLGALAMAPLVSLERKERERRLEERYKRIKKKEP
Ga0370480_0089292_688_828	3300034169	Untreated Peat Soil	MNLIQRIGRSLSVLALAWFSGLENKERDRRLEERFKRSEEKRKNKL
Ga0370501_0051293_1027_1170	3300034195	Untreated Peat Soil	MIMSLFRKIRRRLILIAMAPLSGLENKERNRKIEERLKRSEQKHNYR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088780

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences