NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088764

Metagenome Family F088764

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088764
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 65 residues
Representative Sequence VTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDSV
Number of Associated Samples 63
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 54.13 %
% of genes near scaffold ends (potentially truncated) 14.68 %
% of genes from short scaffolds (< 2000 bps) 78.90 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.064 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(34.862 % of family members)
Environment Ontology (ENVO) Unclassified
(61.468 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(51.376 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.99%    β-sheet: 0.00%    Coil/Unstructured: 43.01%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF02511Thy1 23.85
PF00772DnaB 22.94
PF03796DnaB_C 14.68
PF04404ERF 4.59
PF14890Intein_splicing 1.83
PF00805Pentapeptide 0.92
PF00145DNA_methylase 0.92
PF13730HTH_36 0.92
PF01242PTPS 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 37.61
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 23.85
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 14.68
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.92
COG07206-pyruvoyl-tetrahydropterin synthaseCoenzyme transport and metabolism [H] 0.92
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.06 %
All OrganismsrootAll Organisms22.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002408|B570J29032_109853129All Organisms → Viruses → Predicted Viral1668Open in IMG/M
3300002835|B570J40625_100198612All Organisms → Viruses → Predicted Viral2178Open in IMG/M
3300004112|Ga0065166_10067667Not Available1231Open in IMG/M
3300004112|Ga0065166_10428552Not Available555Open in IMG/M
3300005581|Ga0049081_10053217Not Available1531Open in IMG/M
3300005581|Ga0049081_10266274Not Available598Open in IMG/M
3300005662|Ga0078894_10019659All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5441Open in IMG/M
3300005662|Ga0078894_10028539Not Available4584Open in IMG/M
3300005662|Ga0078894_10094960All Organisms → Viruses → Predicted Viral2623Open in IMG/M
3300005662|Ga0078894_10183346Not Available1891Open in IMG/M
3300005805|Ga0079957_1352728Not Available644Open in IMG/M
3300006030|Ga0075470_10073618Not Available1035Open in IMG/M
3300006030|Ga0075470_10149747Not Available682Open in IMG/M
3300006641|Ga0075471_10368076Not Available724Open in IMG/M
3300006802|Ga0070749_10181392Not Available1212Open in IMG/M
3300006802|Ga0070749_10366171Not Available799Open in IMG/M
3300006802|Ga0070749_10458039Not Available698Open in IMG/M
3300006802|Ga0070749_10549822Not Available626Open in IMG/M
3300007346|Ga0070753_1300103Not Available574Open in IMG/M
3300007538|Ga0099851_1239245Not Available652Open in IMG/M
3300007541|Ga0099848_1083844Not Available1239Open in IMG/M
3300008107|Ga0114340_1000808Not Available25449Open in IMG/M
3300008110|Ga0114343_1085722Not Available1121Open in IMG/M
3300008110|Ga0114343_1166668Not Available681Open in IMG/M
3300008266|Ga0114363_1136055Not Available1362Open in IMG/M
3300008266|Ga0114363_1213376Not Available580Open in IMG/M
3300009165|Ga0105102_10055125Not Available1760Open in IMG/M
3300009168|Ga0105104_10595961Not Available629Open in IMG/M
3300010354|Ga0129333_10068996Not Available3285Open in IMG/M
3300010354|Ga0129333_10094403Not Available2765Open in IMG/M
3300010354|Ga0129333_10257324Not Available1572Open in IMG/M
3300010354|Ga0129333_11740273Not Available506Open in IMG/M
3300010370|Ga0129336_10216553Not Available1085Open in IMG/M
3300010370|Ga0129336_10421180Not Available727Open in IMG/M
3300012012|Ga0153799_1010874All Organisms → Viruses → Predicted Viral2011Open in IMG/M
3300013005|Ga0164292_10288093All Organisms → Viruses → Predicted Viral1128Open in IMG/M
3300013372|Ga0177922_10409330Not Available585Open in IMG/M
3300013372|Ga0177922_10994420Not Available1810Open in IMG/M
3300017747|Ga0181352_1044772All Organisms → Viruses → Predicted Viral1301Open in IMG/M
3300017747|Ga0181352_1076306Not Available941Open in IMG/M
3300017747|Ga0181352_1194219Not Available523Open in IMG/M
3300017754|Ga0181344_1022120Not Available1968Open in IMG/M
3300017754|Ga0181344_1047232Not Available1289Open in IMG/M
3300017766|Ga0181343_1004477All Organisms → cellular organisms → Bacteria4894Open in IMG/M
3300017766|Ga0181343_1009994Not Available3079Open in IMG/M
3300017766|Ga0181343_1022618Not Available1933Open in IMG/M
3300017766|Ga0181343_1034791All Organisms → Viruses → Predicted Viral1513Open in IMG/M
3300017766|Ga0181343_1046671Not Available1281Open in IMG/M
3300017778|Ga0181349_1244380Not Available602Open in IMG/M
3300017780|Ga0181346_1005943Not Available5311Open in IMG/M
3300017780|Ga0181346_1112317All Organisms → Viruses → Predicted Viral1049Open in IMG/M
3300017780|Ga0181346_1145465Not Available891Open in IMG/M
3300017780|Ga0181346_1229615Not Available657Open in IMG/M
3300017785|Ga0181355_1007166All Organisms → Viruses → Predicted Viral4922Open in IMG/M
3300017785|Ga0181355_1024788Not Available2604Open in IMG/M
3300017785|Ga0181355_1130954Not Available1021Open in IMG/M
3300017785|Ga0181355_1318246Not Available579Open in IMG/M
3300019784|Ga0181359_1176488Not Available710Open in IMG/M
3300019784|Ga0181359_1179074Not Available702Open in IMG/M
3300019784|Ga0181359_1182375All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium692Open in IMG/M
3300020048|Ga0207193_1392319Not Available931Open in IMG/M
3300020570|Ga0208465_1024234Not Available793Open in IMG/M
3300022179|Ga0181353_1039648Not Available1245Open in IMG/M
3300022179|Ga0181353_1087896Not Available777Open in IMG/M
3300022179|Ga0181353_1128744Not Available599Open in IMG/M
3300022190|Ga0181354_1025749All Organisms → Viruses → Predicted Viral1898Open in IMG/M
3300022190|Ga0181354_1088112All Organisms → Viruses → Predicted Viral1019Open in IMG/M
3300022190|Ga0181354_1167097Not Available678Open in IMG/M
3300022198|Ga0196905_1084577Not Available861Open in IMG/M
3300022407|Ga0181351_1103021All Organisms → Viruses → Predicted Viral1100Open in IMG/M
3300022407|Ga0181351_1151886Not Available831Open in IMG/M
3300022407|Ga0181351_1177560Not Available737Open in IMG/M
3300025585|Ga0208546_1003024Not Available4933Open in IMG/M
3300025585|Ga0208546_1055839Not Available931Open in IMG/M
3300025585|Ga0208546_1140760Not Available519Open in IMG/M
3300025872|Ga0208783_10399669Not Available530Open in IMG/M
3300025889|Ga0208644_1179655Not Available940Open in IMG/M
3300025889|Ga0208644_1281442Not Available670Open in IMG/M
3300027608|Ga0208974_1065030All Organisms → Viruses → Predicted Viral1020Open in IMG/M
3300027659|Ga0208975_1146970Not Available659Open in IMG/M
3300027693|Ga0209704_1068866Not Available984Open in IMG/M
3300027769|Ga0209770_10030692All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2338Open in IMG/M
3300027805|Ga0209229_10174020Not Available967Open in IMG/M
3300031758|Ga0315907_10995975Not Available606Open in IMG/M
3300031787|Ga0315900_10103495Not Available2764Open in IMG/M
3300031951|Ga0315904_10479130Not Available1104Open in IMG/M
3300031951|Ga0315904_10597771Not Available950Open in IMG/M
3300031963|Ga0315901_11082112Not Available553Open in IMG/M
3300032116|Ga0315903_10238747All Organisms → Viruses → Predicted Viral1581Open in IMG/M
3300032116|Ga0315903_11157482Not Available526Open in IMG/M
3300033978|Ga0334977_0000235Not Available37908Open in IMG/M
3300033993|Ga0334994_0099745All Organisms → cellular organisms → Bacteria1708Open in IMG/M
3300033995|Ga0335003_0409611Not Available579Open in IMG/M
3300034012|Ga0334986_0048145All Organisms → Viruses → Predicted Viral2723Open in IMG/M
3300034062|Ga0334995_0287305All Organisms → Viruses → Predicted Viral1085Open in IMG/M
3300034064|Ga0335001_0619131Not Available568Open in IMG/M
3300034066|Ga0335019_0576490Not Available662Open in IMG/M
3300034082|Ga0335020_0197205Not Available1007Open in IMG/M
3300034101|Ga0335027_0001076Not Available23698Open in IMG/M
3300034101|Ga0335027_0147430Not Available1731Open in IMG/M
3300034101|Ga0335027_0447304Not Available824Open in IMG/M
3300034102|Ga0335029_0286715Not Available1046Open in IMG/M
3300034104|Ga0335031_0013573All Organisms → cellular organisms → Bacteria5985Open in IMG/M
3300034120|Ga0335056_0053056Not Available2641Open in IMG/M
3300034120|Ga0335056_0227391All Organisms → Viruses → Predicted Viral1064Open in IMG/M
3300034122|Ga0335060_0273555Not Available933Open in IMG/M
3300034166|Ga0335016_0048652All Organisms → Viruses → Predicted Viral3317Open in IMG/M
3300034166|Ga0335016_0065729All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2740Open in IMG/M
3300034200|Ga0335065_0311817Not Available990Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake34.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater18.35%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous15.60%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.42%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient5.50%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.59%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic3.67%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment2.75%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.75%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.92%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.92%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.92%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020570Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027693Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033978Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034120Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172EnvironmentalOpen in IMG/M
3300034122Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181EnvironmentalOpen in IMG/M
3300034166Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
B570J29032_10985312923300002408FreshwaterMSTTPLTEKAKLDVLQCGRPAKVRAEFAEQLEKKIYDLTAFIHSPEVFEQLGVEQRSKLGAILTDKV*
B570J40625_10019861243300002835FreshwaterMSPTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKLNAITEYLIQPAIVQHLTSDQIAELDRILTDKV*
Ga0065166_1006766723300004112Freshwater LakeMFTTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKIHALTEYITQPAIVQHLTADQIAELDRILTDKV*
Ga0065166_1042855213300004112Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTDSL*
Ga0049081_1005321733300005581Freshwater LenticVTPLTDKAQRDVLQCGRPAKVKAEFAAQLETQIYALTAFVRDPEVFKHLSVAQIAKLDAIFTDSL*
Ga0049081_1026627413300005581Freshwater LenticLTPLTDKAQLDILQCGRPAKVKAEFAAKLETKVNALTDFIRDPEVFKHLSVAQIAKLDAIFTDSL*
Ga0078894_1001965973300005662Freshwater LakeVTPLTERAKLDVLQCGRPAKVKAEFAAQLETQIYALTAFVRDPEVFKHLSVAQIAKLDAIFTDSL*
Ga0078894_1002853953300005662Freshwater LakeVTPLTERAKLDVLQCGRPAKVRAEFAESLEKQLYDLTNFIRDPEVFRHLSVAQIARLDSIFTDKV*
Ga0078894_1009496083300005662Freshwater LakeVTPLTDKAQRDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDSL*
Ga0078894_1018334623300005662Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDKV*
Ga0079957_135272833300005805LakeMSLTPLTEKAKLDVLQCGRPAKVRAEFAEQLEKKLNAITEYLIQPAIVQHLTSDQIAELDRILTDKV*
Ga0075470_1007361823300006030AqueousMSITPLTQRAQLDVLQCGRPAKVKAEFAAKLEKKIYALTEFITQPSIVQHLNADQIAKLDAILTD*
Ga0075470_1014974723300006030AqueousMSSTPLTAKAQLDVLQCGRPAKVKAEFAAKLETKINDLTALIRDPAVFQHLSVAQIARLDAI
Ga0075471_1036807623300006641AqueousMSSTPLTAKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTEFITQPSIVQHLTADQIAELDRLLTDKV*
Ga0070749_1018139233300006802AqueousVTPLTAKAQLDVLQCGRPAKVKAEFAAQLEAQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDKV*
Ga0070749_1036617133300006802AqueousMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETKINALTEFVTQPSIVQHLTADQIAKLDAVLTDSV*
Ga0070749_1045803923300006802AqueousMSITPLTQRAQLDVLQCGRPAKVKAEFAAKLEKKIYALTEFITQPSIVQHLTADQIAELDRLLTDKV*
Ga0070749_1054982223300006802AqueousMSSTPLTQRAQLDILQCGRPAKVKADFAAKLETQINDLTAFIRDPAVFQHLSVEQIA
Ga0070753_130010313300007346AqueousTPLTQRAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVAQIARLDAIITD*
Ga0099851_123924513300007538AqueousMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETKINALTEFVTQPSIVQHLTADQIARLDAILADSV*
Ga0099848_108384433300007541AqueousMSSTPLTAKAQLDVLQCGRPAKVKAEFAAQLETKINALTEFVTQPSIVQHLTADQIAKLDVILTDSV*
Ga0114340_1000808233300008107Freshwater, PlanktonMYSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDTV*
Ga0114343_108572233300008110Freshwater, PlanktonVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIHDPEVFKHLSVAQIAKLDAIFTDKV*
Ga0114343_116666813300008110Freshwater, PlanktonNNSLMYSTPLTDKAQLDVMQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDTV*
Ga0114363_113605543300008266Freshwater, PlanktonVTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSIVQHLSTDQIA
Ga0114363_121337623300008266Freshwater, PlanktonVTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSVVQHLSTDQIAKLDSILTDSV*
Ga0105102_1005512533300009165Freshwater SedimentVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVVQHLSVAQIAKLDAIFTDSV*
Ga0105104_1059596113300009168Freshwater SedimentVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFKHLSVAQIAKLDAIFTDSL*
Ga0129333_1006899663300010354Freshwater To Marine Saline GradientVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFLRDPEVVKHLSVAQIAKLDAIFTDSV*
Ga0129333_1009440383300010354Freshwater To Marine Saline GradientMPQTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSIVQHLSTDQIAKLDAILTDSV*
Ga0129333_1025732433300010354Freshwater To Marine Saline GradientVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFLRDPEVFKHLSVAQIAKLDAIFTDSV*
Ga0129333_1174027313300010354Freshwater To Marine Saline GradientVTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPAIVQHLSTDQIAKL
Ga0129336_1021655313300010370Freshwater To Marine Saline GradientNNSRMSSTPLTQRAQLDILQCGRPAKVKAEFAAELETQINDLTAFIRDPAVFQHLSVAQIARLDAIITD*
Ga0129336_1042118023300010370Freshwater To Marine Saline GradientVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFLRDPEVFKHLSVAQIAKLDAIFTDSL*
Ga0153799_101087433300012012FreshwaterLTPLTDKAQLDILQCGRPAKVKAEFAAKLETKVNALTDFITQPSIIKHLSADQIAKLDALLTD*
Ga0164292_1028809333300013005FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDSL*
Ga0177922_1040933013300013372FreshwaterLTPLTDKAQLDILQCGRPAKVKAEFAAKLETKVNALTDFITQPSIIKHLSVAQIARLDALLTDQI*
Ga0177922_1099442013300013372FreshwaterLDILQCGRPAKVKAEFAAKLETKVNALTDFITQPSIIKHLNADQIAKLDALLTDQI*
Ga0181352_104477223300017747Freshwater LakeMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVLQHLSVEQIARLDSILTD
Ga0181352_107630623300017747Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTDSL
Ga0181352_119421923300017747Freshwater LakeVTPLTDKAQRDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTD
Ga0181344_102212073300017754Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDKV
Ga0181344_104723233300017754Freshwater LakeMFTTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKIHALTEYITQPAIVQHLTADQIAELDRILTDKV
Ga0181343_100447763300017766Freshwater LakeVTPLTERAKLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFKHLSVAQIAKLDAIFTDSL
Ga0181343_100999453300017766Freshwater LakeVTPLTERAKLDVLQCGRPAKVRAEFAESLEKQLYDLTNFIRDPEVFRHLSVAQIARLDSIFTDKV
Ga0181343_102261823300017766Freshwater LakeMYSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETKIYALTDLIRDPAVLQHLSVEQIARLDSILTD
Ga0181343_103479153300017766Freshwater LakeVTPLTEKAQLDILQCGRPAKVKAEFAAQLETQIYALTAFIRDPQVFQHLSVAQIAKLDSIFTDKV
Ga0181343_104667123300017766Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTDSL
Ga0181349_124438023300017778Freshwater LakeMSITPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVLQHLSVEQIARLDSILTD
Ga0181346_100594393300017780Freshwater LakeMSITPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVFQHLSVEQIARLDAILTD
Ga0181346_111231723300017780Freshwater LakeMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETKIYALTDLIRDPAVLQHLSVEQIARLDSILTD
Ga0181346_114546523300017780Freshwater LakeMSPTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKINALTEFITQPAIVQHLSVEQLAKLDAILTDKVRAGDEART
Ga0181346_122961523300017780Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPQVFQHLSVAQIAKLDSIFTDKV
Ga0181355_100716663300017785Freshwater LakeMSLTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKLNAITEYVTQPAIVQHLTADQIAELDRLLTDKV
Ga0181355_102478853300017785Freshwater LakeMSSTPLTQRAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDKV
Ga0181355_113095433300017785Freshwater LakeMSSTPLTQRAQLDILQCGRPAKVKAEFAAKLETKINALTDFIRDPEVFKHLSVAQIAKLDAIFTDSL
Ga0181355_131824633300017785Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDSI
Ga0181359_117648823300019784Freshwater LakeMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVFQHLSVEQIARLD
Ga0181359_117907423300019784Freshwater LakeVTPLTDKAQRDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDSL
Ga0181359_118237523300019784Freshwater LakeMSLTPLTQRAQLDILQCGRPAKVKAEFAAKLETKINALTDFIRDPEVFKHLSVAQIAKLDAIFTDSL
Ga0207193_139231923300020048Freshwater Lake SedimentMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDSILTD
Ga0208465_102423423300020570FreshwaterMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVAQIARLDSILTD
Ga0181353_103964833300022179Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDSL
Ga0181353_108789613300022179Freshwater LakeTNNSRMSLTPLTQRAQLDILQCGRPAKVKAEFAAKLETKINALTDFIRDPEVFKHLSVAQIAKLDAIFTDSL
Ga0181353_112874413300022179Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFKHLSVAQIAKLDAIFTDSV
Ga0181354_102574933300022190Freshwater LakeMSSTPLTAKAQLDILQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDTV
Ga0181354_108811223300022190Freshwater LakeMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVFQHLSVEQIARLDAILTD
Ga0181354_116709713300022190Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFT
Ga0196905_108457723300022198AqueousMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETKINALTEFVTQPSIVQHLTADQIARLDAILADSV
Ga0181351_110302113300022407Freshwater LakeVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTD
Ga0181351_115188623300022407Freshwater LakeMSITPLTDKAQLDVLQCGRPAKVKAEFAAKLETKINALTNFICDPAVFQHLSVEQVARLDSILTDTV
Ga0181351_117756023300022407Freshwater LakeMSITPLTDKAQLDVLQCGRPAKVKAEFAAKLEKKIYALTDLIRDPAVLQHLSVEQIARLDDLLTD
Ga0208546_100302463300025585AqueousMSSTPLTAKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDTV
Ga0208546_105583923300025585AqueousMSITPLTQRAQLDVLQCGRPAKVKAEFAAKLEKKIYALTEFITQPSIVQHLNADQIAKLDAILTD
Ga0208546_114076023300025585AqueousMSSTPLTQRAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVLQHLSVEQIARLDAILTDTV
Ga0208783_1039966923300025872AqueousMSSTPLTAKAQLDVLQCGRPAKVKAEFAAKLETKINDLTALIRDPAVFQHLSVAQIARLDAILTDTL
Ga0208644_117965523300025889AqueousVTPLTAKAQLDVLQCGRPAKVKAEFAAQLEAQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDKV
Ga0208644_128144213300025889AqueousMSITPLTQRAQLDVLQCGRPAKVKAEFAAKLEKKIYALTEFITQPSIVQHLNAD
Ga0208974_106503033300027608Freshwater LenticLTPLTDKAQLDILQCGRPAKVKAEFAAKLETKVNALTDFITQPSIIKHLSADQIAKLDALLTD
Ga0208975_114697023300027659Freshwater LenticVTPLTDKAQRDVLQCGRPAKVKAEFAAQLETQIYALTAFVRDPEVFKHLSVAQIAKLDAIFTDSL
Ga0209704_106886633300027693Freshwater SedimentVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVVQHLSVAQIAKLDAIFTDSV
Ga0209770_1003069263300027769Freshwater LakeVTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDSL
Ga0209229_1017402033300027805Freshwater And SedimentVTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFVRDPEVFQHLSVAQIAKLDAIFTDSV
Ga0315907_1099597533300031758FreshwaterVTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSIVQHLSTDQIAKLDAILTDSV
Ga0315900_1010349533300031787FreshwaterMYSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTD
Ga0315904_1047913023300031951FreshwaterMYSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTDTV
Ga0315904_1059777133300031951FreshwaterVTPLTERAKLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSIVQHLSTDQIAKLDAILTDSV
Ga0315901_1108211223300031963FreshwaterMSSTPLTDKAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAIFTDTV
Ga0315903_1023874733300032116FreshwaterVTPLTDKAQLDILQCGRPAKVKAEFAAKLETKINALTEFITQPSIVQHLSTDQIAKLDSILTDSV
Ga0315903_1115748223300032116FreshwaterMSSTPLTARAQLDVLQCGRPAKVKAEFAAKLETQINDLTAFIRDPAVFQHLSVEQIARLDAILTD
Ga0334977_0000235_20283_204863300033978FreshwaterMSTTPLTETAKCQVLQCGRPAKVRAEFAEQLERKLNAITEFVTQPSLVQHFTADQIAQLDRILADKI
Ga0334994_0099745_1314_15113300033993FreshwaterVTPLTEKAQLDVLQCGRPAKVKAEFAAQLETQVYALTAFIRDPEVVQHLSVAQIAKLDAIFTDSV
Ga0335003_0409611_166_3633300033995FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFADQLETQIYALTAFVRDPEVVQHLSVAQIAKLDAIFTDSV
Ga0334986_0048145_1073_12703300034012FreshwaterVTPLTSKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFRHLSVEQRSELDSIFTDSV
Ga0334995_0287305_64_2613300034062FreshwaterVTPLTEKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFVRDPEVFQHLSVAQIAKLDAIFTDKV
Ga0335001_0619131_114_3113300034064FreshwaterVTPLTKKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTDSV
Ga0335019_0576490_2_1603300034066FreshwaterMTPLTSKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFRHLSVEQ
Ga0335020_0197205_717_9143300034082FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFQHLSVAQIAELDSIFTDKV
Ga0335027_0001076_2695_28923300034101FreshwaterVTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDSV
Ga0335027_0147430_1444_16413300034101FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFATQLEAQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDKV
Ga0335027_0447304_530_7273300034101FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPQVFQHLSVAQIAKLDAIFTDSV
Ga0335029_0286715_591_7883300034102FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDKV
Ga0335031_0013573_2635_28323300034104FreshwaterVTPLTDKAQLDILQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDAIFTDSV
Ga0335056_0053056_581_7783300034120FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVVQHLSVAQIAKLDAIFTDSF
Ga0335056_0227391_829_10263300034120FreshwaterVTPLTDKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFVRDPEVVQHLSVAQIAKLDAIFTDKV
Ga0335060_0273555_450_6473300034122FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAANLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDSV
Ga0335016_0048652_683_8863300034166FreshwaterMSPTPLTEKAKLDVLQCGRPAKVRAEFAEKLERKLNAITEYLIQPAIVQHLTSDQIAELDRILTDKV
Ga0335016_0065729_2492_26893300034166FreshwaterVTPLTAKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIKDPQVFQHLSVAQIAKLDAIFTDKV
Ga0335065_0311817_328_5253300034200FreshwaterVTPLTEKAQLDVLQCGRPAKVKAEFAAQLETQIYALTAFIRDPEVFQHLSVAQIAKLDSIFTDKV


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