Metagenome / Metatranscriptome Family F088727

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088727
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	47 residues
Representative Sequence	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKGKK
Number of Associated Samples	50
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.99 %
% of genes near scaffold ends (potentially truncated)	19.27 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (90.826 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (59.633 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.083 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 10.53% Coil/Unstructured: 89.47%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03592	Terminase_2	43.12
PF00899	ThiF	0.92
PF03237	Terminase_6N	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	43.12

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
All Organisms	root	All Organisms	9.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Viruses	superkingdom	All Organisms → Viruses	6.42 %
cellular organisms	root	All Organisms → cellular organisms	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.42 %
Flavobacteriales bacterium TMED123	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002484\|JGI25129J35166_1006089	All Organisms → Viruses → Predicted Viral	3353	Open in IMG/M
3300002484\|JGI25129J35166_1059933	Not Available	715	Open in IMG/M
3300002518\|JGI25134J35505_10055482	Not Available	978	Open in IMG/M
3300006736\|Ga0098033_1017305	All Organisms → Viruses → Predicted Viral	2257	Open in IMG/M
3300006736\|Ga0098033_1076772	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300006736\|Ga0098033_1081588	Not Available	929	Open in IMG/M
3300006736\|Ga0098033_1182519	Not Available	583	Open in IMG/M
3300006736\|Ga0098033_1208185	Not Available	541	Open in IMG/M
3300006736\|Ga0098033_1227028	Not Available	512	Open in IMG/M
3300006738\|Ga0098035_1024867	Not Available	2307	Open in IMG/M
3300006738\|Ga0098035_1031089	Not Available	2026	Open in IMG/M
3300006738\|Ga0098035_1044842	Not Available	1632	Open in IMG/M
3300006738\|Ga0098035_1154670	Not Available	778	Open in IMG/M
3300006738\|Ga0098035_1163952	Not Available	751	Open in IMG/M
3300006738\|Ga0098035_1167155	Not Available	743	Open in IMG/M
3300006738\|Ga0098035_1221861	Not Available	627	Open in IMG/M
3300006751\|Ga0098040_1040181	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300006751\|Ga0098040_1212676	Not Available	564	Open in IMG/M
3300006751\|Ga0098040_1252959	Not Available	510	Open in IMG/M
3300006753\|Ga0098039_1087988	Not Available	1072	Open in IMG/M
3300006753\|Ga0098039_1092291	Not Available	1044	Open in IMG/M
3300006753\|Ga0098039_1100769	Not Available	994	Open in IMG/M
3300006753\|Ga0098039_1119362	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123	905	Open in IMG/M
3300006753\|Ga0098039_1172688	Not Available	736	Open in IMG/M
3300006753\|Ga0098039_1205826	Not Available	666	Open in IMG/M
3300006753\|Ga0098039_1228385	Not Available	628	Open in IMG/M
3300006753\|Ga0098039_1248064	Not Available	599	Open in IMG/M
3300006754\|Ga0098044_1241407	Not Available	702	Open in IMG/M
3300006926\|Ga0098057_1032655	All Organisms → Viruses → Predicted Viral	1292	Open in IMG/M
3300006926\|Ga0098057_1050267	Not Available	1024	Open in IMG/M
3300006926\|Ga0098057_1107260	Not Available	681	Open in IMG/M
3300006926\|Ga0098057_1170723	Not Available	531	Open in IMG/M
3300006927\|Ga0098034_1124334	Not Available	733	Open in IMG/M
3300007963\|Ga0110931_1036459	Not Available	1487	Open in IMG/M
3300008050\|Ga0098052_1212676	Not Available	748	Open in IMG/M
3300008216\|Ga0114898_1003623	Not Available	7387	Open in IMG/M
3300008216\|Ga0114898_1019977	Not Available	2348	Open in IMG/M
3300008216\|Ga0114898_1042193	Not Available	1482	Open in IMG/M
3300008216\|Ga0114898_1074005	Not Available	1049	Open in IMG/M
3300008216\|Ga0114898_1137295	Not Available	710	Open in IMG/M
3300008216\|Ga0114898_1181158	Not Available	594	Open in IMG/M
3300008217\|Ga0114899_1006536	Not Available	5288	Open in IMG/M
3300008217\|Ga0114899_1045885	Not Available	1573	Open in IMG/M
3300008217\|Ga0114899_1047276	All Organisms → Viruses → Predicted Viral	1545	Open in IMG/M
3300008217\|Ga0114899_1086954	Not Available	1066	Open in IMG/M
3300008217\|Ga0114899_1236811	Not Available	567	Open in IMG/M
3300008217\|Ga0114899_1259763	Not Available	532	Open in IMG/M
3300008218\|Ga0114904_1160192	Not Available	525	Open in IMG/M
3300008219\|Ga0114905_1283932	Not Available	511	Open in IMG/M
3300009413\|Ga0114902_1011395	Not Available	3064	Open in IMG/M
3300009413\|Ga0114902_1088071	Not Available	840	Open in IMG/M
3300009414\|Ga0114909_1050800	Not Available	1227	Open in IMG/M
3300009414\|Ga0114909_1117674	Not Available	718	Open in IMG/M
3300009418\|Ga0114908_1163119	Not Available	709	Open in IMG/M
3300009418\|Ga0114908_1164235	Not Available	706	Open in IMG/M
3300009602\|Ga0114900_1098867	Not Available	803	Open in IMG/M
3300009602\|Ga0114900_1160765	Not Available	574	Open in IMG/M
3300009602\|Ga0114900_1161109	Not Available	573	Open in IMG/M
3300009603\|Ga0114911_1087485	Not Available	921	Open in IMG/M
3300009605\|Ga0114906_1185439	Not Available	702	Open in IMG/M
3300009605\|Ga0114906_1287861	Not Available	524	Open in IMG/M
3300009605\|Ga0114906_1302031	Not Available	507	Open in IMG/M
3300009619\|Ga0105236_1064284	Not Available	506	Open in IMG/M
3300009620\|Ga0114912_1139157	Not Available	569	Open in IMG/M
3300009622\|Ga0105173_1019950	Not Available	1007	Open in IMG/M
3300010150\|Ga0098056_1107194	Not Available	952	Open in IMG/M
3300010155\|Ga0098047_10034664	Not Available	2011	Open in IMG/M
3300010155\|Ga0098047_10050364	Not Available	1645	Open in IMG/M
3300010155\|Ga0098047_10223654	Not Available	718	Open in IMG/M
3300010155\|Ga0098047_10361065	Not Available	545	Open in IMG/M
3300017775\|Ga0181432_1138452	Not Available	743	Open in IMG/M
3300025069\|Ga0207887_1023333	Not Available	983	Open in IMG/M
3300025072\|Ga0208920_1087185	Not Available	584	Open in IMG/M
3300025078\|Ga0208668_1026416	Not Available	1149	Open in IMG/M
3300025082\|Ga0208156_1027736	Not Available	1234	Open in IMG/M
3300025082\|Ga0208156_1060975	Not Available	735	Open in IMG/M
3300025097\|Ga0208010_1011196	All Organisms → Viruses → Predicted Viral	2321	Open in IMG/M
3300025097\|Ga0208010_1011759	Not Available	2254	Open in IMG/M
3300025097\|Ga0208010_1056628	Not Available	861	Open in IMG/M
3300025097\|Ga0208010_1095705	Not Available	614	Open in IMG/M
3300025109\|Ga0208553_1025118	Not Available	1559	Open in IMG/M
3300025109\|Ga0208553_1047843	Not Available	1064	Open in IMG/M
3300025109\|Ga0208553_1099991	Not Available	672	Open in IMG/M
3300025109\|Ga0208553_1106600	Not Available	645	Open in IMG/M
3300025112\|Ga0209349_1004713	Not Available	5987	Open in IMG/M
3300025112\|Ga0209349_1029801	All Organisms → Viruses → Predicted Viral	1834	Open in IMG/M
3300025112\|Ga0209349_1045806	Not Available	1390	Open in IMG/M
3300025114\|Ga0208433_1036384	All Organisms → Viruses → Predicted Viral	1348	Open in IMG/M
3300025118\|Ga0208790_1157303	Not Available	624	Open in IMG/M
3300025122\|Ga0209434_1055103	Not Available	1217	Open in IMG/M
3300025122\|Ga0209434_1199453	Not Available	519	Open in IMG/M
3300025131\|Ga0209128_1124368	Not Available	801	Open in IMG/M
3300025131\|Ga0209128_1204162	Not Available	554	Open in IMG/M
3300025141\|Ga0209756_1153528	Not Available	924	Open in IMG/M
3300025141\|Ga0209756_1289286	Not Available	583	Open in IMG/M
3300025251\|Ga0208182_1004484	Not Available	4766	Open in IMG/M
3300025251\|Ga0208182_1016019	Not Available	1945	Open in IMG/M
3300025264\|Ga0208029_1054336	Not Available	829	Open in IMG/M
3300025264\|Ga0208029_1059184	Not Available	778	Open in IMG/M
3300025267\|Ga0208179_1000361	Not Available	31071	Open in IMG/M
3300025268\|Ga0207894_1071085	Not Available	595	Open in IMG/M
3300025270\|Ga0208813_1003081	Not Available	6785	Open in IMG/M
3300025270\|Ga0208813_1052023	Not Available	901	Open in IMG/M
3300025274\|Ga0208183_1102649	Not Available	521	Open in IMG/M
3300025277\|Ga0208180_1052502	Not Available	1040	Open in IMG/M
3300025280\|Ga0208449_1063550	Not Available	951	Open in IMG/M
3300025282\|Ga0208030_1169677	Not Available	501	Open in IMG/M
3300025286\|Ga0208315_1047056	Not Available	1160	Open in IMG/M
3300030729\|Ga0308131_1108936	Not Available	570	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	99.08%
Strait	Environmental → Aquatic → Marine → Strait	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	99.08%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	59.63%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	37.61%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	1.83%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002484	Marine viral communities from the Pacific Ocean - ETNP_2_130	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009619	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250	Environmental	Open in IMG/M
3300009620	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51	Environmental	Open in IMG/M
3300009622	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025082	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025114	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025131	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025251	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)	Environmental	Open in IMG/M
3300025264	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)	Environmental	Open in IMG/M
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental	Open in IMG/M
3300025268	Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)	Environmental	Open in IMG/M
3300025270	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)	Environmental	Open in IMG/M
3300025274	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025280	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)	Environmental	Open in IMG/M
3300025282	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300030729	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1108_32.2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25129J35166_10060892	3300002484	Marine	MADTIDIGDTPDNSPLKTGDMRRKYDQSKCGKGYKSVKGRCVKIREKK*
JGI25129J35166_10599332	3300002484	Marine	MADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKEDK*
JGI25134J35505_100554823	3300002518	Marine	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGFKNVNGKCVKV
Ga0098033_10173056	3300006736	Marine	MADIIDIGTTPDDSPLKTGDMRRKYDQSKCGKGYKNVKGKCVKIKGGK*
Ga0098033_10767723	3300006736	Marine	VADIIDIGTTPDDSPLKTGDMRRNYNQTKCGKGYKSVKGKCVKIKEKK*
Ga0098033_10815882	3300006736	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKGKK*
Ga0098033_11825192	3300006736	Marine	MADIIDIGTTPDDSPLKTGDTRRKYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0098033_12081852	3300006736	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGYKSVKGKCVK*
Ga0098033_12270282	3300006736	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKNVKGKCVKIKEKK*
Ga0098035_10248673	3300006738	Marine	MADIIEIGDTPDDSPLKTGGMRRKYNQSKCGKGYKSVKGKCVKIKGGK*
Ga0098035_10310895	3300006738	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVRGKCVKIKGKK*
Ga0098035_10448423	3300006738	Marine	MADIIEIGDTPDDNPLNTGDMRRKYNRSKCGKGYKNVNGKCVKINKENDGR*
Ga0098035_11546701	3300006738	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIRKEK*
Ga0098035_11639522	3300006738	Marine	MADIIDIGTTPDDSPLKTGDMRRKYDQSKCGKGYKNVKGKCVKIKGG
Ga0098035_11671553	3300006738	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGFKNVNGKCVRVKGKK*
Ga0098035_12218613	3300006738	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIRKEK*
Ga0098040_10401815	3300006751	Marine	TPDDSPLKTGDTRRTYNQSKCGKGYKNVKGKCVKIRKEK*
Ga0098040_12126762	3300006751	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0098040_12529592	3300006751	Marine	MADIIDIGTTPDDSPLKTGDMRRKYDQSKCGKGYK
Ga0098039_10879881	3300006753	Marine	MADIIDIGNTPDNSPLKTGSMRRKYNQSKCGKGYKSIKGKCVKIKESK*
Ga0098039_10922914	3300006753	Marine	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKNVKGKCVKIRKEK*
Ga0098039_11007692	3300006753	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIKGKQ*
Ga0098039_11193623	3300006753	Marine	MADIIDIGTTPDDSPLKTGDIRRKYNMLCPAGFKKNKHGKCIKAKEKK*
Ga0098039_11726882	3300006753	Marine	MADIIDIGTTPDNSPLKTGDTRRTYTQSKCGKGFKNVNGKCVKLKGKK*
Ga0098039_12058261	3300006753	Marine	MADIIDIGTTPDNSPLKTGGMRRKYNQSKCGKGYKSVKGKCVKIKGSK
Ga0098039_12283852	3300006753	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKSVKGKCVKIKEK*
Ga0098039_12480643	3300006753	Marine	MADIIDIGTTPDDSPLKTGDMRRNYNQSKCGKGYKSIKGKCVKIKEKK*
Ga0098044_12414072	3300006754	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQTKCGKGYKNVKGKCVKIKEK*
Ga0098057_10326552	3300006926	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGYKNVKGKCVKIRKEK*
Ga0098057_10502673	3300006926	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGFKNVNGKCVKV
Ga0098057_11072602	3300006926	Marine	MADIIEIGDTPDDSPLKTGDMRRNYNQTKCGKGYKSVKGKCVKIKEKK*
Ga0098057_11707234	3300006926	Marine	IGTTPDDSPLKTGDMRRSYNQSKCGKGYKSVKGKCVKIKEK*
Ga0098034_11243342	3300006927	Marine	MADIIDIGTTPDGSPLKTGDMRRTYNQSKCGKGYKSVKGKCVKIKEK*
Ga0110931_10364591	3300007963	Marine	TPDDSPLKTGGTRRKYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0098052_12126762	3300008050	Marine	MADIIDIGTTPDDSPLKTGGTRRTYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0114898_10036236	3300008216	Deep Ocean	MADIIDIGNTPDNSPLKTGGMRRKYNKSKCGKGYKNVKGKCVKIRESK*
Ga0114898_10199772	3300008216	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIKGSK*
Ga0114898_10421932	3300008216	Deep Ocean	MAMADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYENVKGKCVKIRKEK*
Ga0114898_10740053	3300008216	Deep Ocean	IIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIGKEK*
Ga0114898_11372952	3300008216	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0114898_11811582	3300008216	Deep Ocean	MADIIDIGETPDDSPLKTGGMRRKYDQSKCGKGYKSVKGRCVKIKKEQ*
Ga0114899_10065364	3300008217	Deep Ocean	MVMADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIKKEK*
Ga0114899_10458851	3300008217	Deep Ocean	MADIIDIGTTPDESPLKTGDMRRSYSQPKCGKGYKSVKGKCVKIRKEK*
Ga0114899_10472762	3300008217	Deep Ocean	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKGKE*
Ga0114899_10869543	3300008217	Deep Ocean	MADIIEIGGTPDDSPLKTGDMRRTYNQSKCGKGYKNVKGKCVKIKGGK*
Ga0114899_12368112	3300008217	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRTYNQSKCGKGYKNVKGKCVKIKEGK*
Ga0114899_12597631	3300008217	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRSYNQPKCGKGYKSVKGKCVKIKEK*
Ga0114904_11601922	3300008218	Deep Ocean	MADTIDIGTTKDDSPLKTGGMRRTYNKSKCGKGYKNVNGKCVKVKGKR*
Ga0114905_12839322	3300008219	Deep Ocean	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYRSVKGKCVKIKRG*
Ga0114902_10113952	3300009413	Deep Ocean	MADIIDIGNTPDNSPLKTGGMRRKYNQSKCGKGYKSVKGRCVKVNGGK*
Ga0114902_10880712	3300009413	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVK
Ga0114909_10508003	3300009414	Deep Ocean	MADIIDIGTTEDNSPLKTGGMRRKYNQSKCGKGYKSVKGKCVKIKEGK*
Ga0114909_11176741	3300009414	Deep Ocean	MVMADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYK
Ga0114908_11631192	3300009418	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRTYNQSKCGKGFK
Ga0114908_11642353	3300009418	Deep Ocean	MVMADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKVKEDK*
Ga0114900_10988671	3300009602	Deep Ocean	VADIIDIGTTPDNSPLKTGDTSRTYNQSKCGKGFKNVNGKCVKVKGKK*
Ga0114900_11607651	3300009602	Deep Ocean	MADIIDIGTTEDDSPLKTGDMRRAYNQSKCGKGYKSVKGKCVKINKKKK*
Ga0114900_11611092	3300009602	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRTYNQSKCGKGYKSVKGKCVKIKEK*
Ga0114911_10874851	3300009603	Deep Ocean	VADIIDIGTTPDDSPLKTGDMRRTYNQSKCGKGYKNVKGKCVKIKEK*
Ga0114906_11854392	3300009605	Deep Ocean	MADIIDIGTTKDDSPLKTGGMRRKYNQSKCGKGYKNVKGKCVKIKGSK*
Ga0114906_12878611	3300009605	Deep Ocean	VMADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKVKEDK*
Ga0114906_13020311	3300009605	Deep Ocean	EMVMADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIKEK*
Ga0105236_10642841	3300009619	Marine Oceanic	MADIIDIGTTPDDSPLKTGDMRRTYTQSKCGKGYKNVKGKCVK
Ga0114912_11391573	3300009620	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIKKEK*
Ga0105173_10199502	3300009622	Marine Oceanic	MADIIDIGTTPDDSPLKTGDMRRTYNQPKCGKGYKNVKGKCVKIKGEK*
Ga0098056_11071942	3300010150	Marine	MVMADIIDIGNTPDNSPLKTGGMGRKYNQSKCGKGFKSVNGKCVKVKGKK*
Ga0098047_100346642	3300010155	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIKEK*
Ga0098047_100503643	3300010155	Marine	IIDIGTTPDDSPLKTGDLRRTYNQSKCGKGYKNVKGKCVKIRGSK*
Ga0098047_102236541	3300010155	Marine	MADIIDIGTTPDDSPLKTGDMRRNYNQTKCGKGYKSVKGKCVKIKEKK*
Ga0098047_103610652	3300010155	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKSIKGKCVKIKEK*
Ga0181432_11384522	3300017775	Seawater	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKSIKGKCVKIKEK
Ga0207887_10233331	3300025069	Marine	MADIIDIGNTPDNSPLKTGGMRRKYNQSKCGKGYKSVKGRCVKINGGK
Ga0208920_10871851	3300025072	Marine	MADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIKGKQ
Ga0208668_10264162	3300025078	Marine	MADIIDIGTTPDNSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIRKEK
Ga0208156_10277362	3300025082	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQAKCGKGYKNVKGKCVKIRKEK
Ga0208156_10609752	3300025082	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKGKK
Ga0208010_10111962	3300025097	Marine	MADIIEIGDTPDDSPLKTGGMRRKYNQSKCGKGYKSVKGKCVKIKGGK
Ga0208010_10117593	3300025097	Marine	MADIIDIGTTPDDSPLKTGDMRRKYDQSKCGKGYKNVKGKCVKIKGGK
Ga0208010_10566282	3300025097	Marine	MADIIDIGTTPDGSPLKTGDMRRTYNQSKCGKGYKSVKGKCVKIKEK
Ga0208010_10957052	3300025097	Marine	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGFKNVNGKCVKVKGKK
Ga0208553_10251184	3300025109	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQVKCGKGYKNVKGKCVKIRKEK
Ga0208553_10478432	3300025109	Marine	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIRKEK
Ga0208553_10999912	3300025109	Marine	MADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIRKEK
Ga0208553_11066001	3300025109	Marine	KCNVLKKSRRIMADIIDIGTTPDNSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIKGKQ
Ga0209349_10047135	3300025112	Marine	MADTIDIGDTPDNSPLKTGDMRRKYDQSKCGKGYKSVKGRCVKIREKK
Ga0209349_10298013	3300025112	Marine	MADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKEDK
Ga0209349_10458062	3300025112	Marine	MADIIDIGTTPDDSPLKTGGTRRKYNQSKCGKGFKNVNGKCVKVKGKK
Ga0208433_10363842	3300025114	Marine	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVRGKCVKIKGKK
Ga0208790_11573032	3300025118	Marine	MADIIEIGDTPDDNPLNTGDMRRKYNRSKCGKGYKNVNGKCVKINKE
Ga0209434_10551032	3300025122	Marine	MVMADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKEDK
Ga0209434_11994532	3300025122	Marine	MADIIDIGTTPDDSPLKTGGMRRKYNQSKCGKGYKSVKGKCVKVRKEK
Ga0209128_11243682	3300025131	Marine	MADIIDIGTTPDDSPLKTGDTRRKHNMLCPAGFKKNKNGKCVKIKEKK
Ga0209128_12041621	3300025131	Marine	MADIIEIGDTPDDNPLNTGDMRRKYNRSKCGKGYKNVKGKCVKIKEENDGR
Ga0209756_11535281	3300025141	Marine	MVMADIIDIGNTPDDSPLKTGGMRKKYNQSKCGKGFKSVNGKCVKVKGKK
Ga0209756_12892862	3300025141	Marine	MADIIDIGTTPDNSPLKTGDMRRSYNQSKCGKGYKSVKGKCIKIKEK
Ga0208182_10044844	3300025251	Deep Ocean	MADIVDIGDTPDNSPLKTGGMRRKYNKSKCGKGYKNVKGKCVKIRESK
Ga0208182_10160192	3300025251	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVKGKCVKIKGSK
Ga0208029_10543362	3300025264	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYK
Ga0208029_10591842	3300025264	Deep Ocean	MADIIDIGNTPDNSPLKTGGMRRKYNQSKCGKGYKSVKGRCVKVNGGK
Ga0208179_100036135	3300025267	Deep Ocean	MADIIDIGNTPDNSPLKTGGMRRKYNQSKCGKGYKNVKGKCVKIRESK
Ga0207894_10710852	3300025268	Deep Ocean	MADIIDIGTTPDDSPLKTGDMRRSYNQTKCGKGYKNVKGKCVKVRKEK
Ga0208813_100308115	3300025270	Deep Ocean	MADIIDIGNTPDNSPLKTGGMRRKYNKSKCGKGYKNVKGKCVKIRESK
Ga0208813_10520232	3300025270	Deep Ocean	VADIIDIGTTPDDSPLKTGDMRRTYNQSKCGKGYKNVKGKCVKIKEGK
Ga0208183_11026491	3300025274	Deep Ocean	MVMADIIDIGTTPDDSPLKTGDMRRSYNQSKCGKGYKNVKGKCVKIKKEK
Ga0208180_10525021	3300025277	Deep Ocean	MADIIDIGTTPDDSPLKTGDTRRTYNQSKCGKGYKSVKGKCV
Ga0208449_10635501	3300025280	Deep Ocean	MVMADTIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKRGK
Ga0208030_11696771	3300025282	Deep Ocean	MADIIDIGTTKDDSPLKTGGMRRKYNQSKCGKGYKNVKGKCVKIKGSK
Ga0208315_10470563	3300025286	Deep Ocean	MADIIDIGTTPDDSPLKTGGMRRTYNQSKCGKGYKSVKGKCVKIKGKE
Ga0308131_11089362	3300030729	Marine	MADIIDIGTTPDDSPLRTGDTRRKYNQSKCGKGFKNVNGKCVKVKGKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088727

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences