NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088716

Metagenome / Metatranscriptome Family F088716

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088716
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 41 residues
Representative Sequence MRGSFTYHDLMYKISHEDLEILNKIIKDNIETTEKTRMPLI
Number of Associated Samples 87
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 78.90 %
% of genes near scaffold ends (potentially truncated) 15.60 %
% of genes from short scaffolds (< 2000 bps) 64.22 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (84.404 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(21.101 % of family members)
Environment Ontology (ENVO) Unclassified
(57.798 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.239 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.58%    β-sheet: 0.00%    Coil/Unstructured: 59.42%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF12322T4_baseplate 5.50
PF07230Portal_Gp20 2.75
PF12850Metallophos_2 0.92
PF03900Porphobil_deamC 0.92
PF07554FIVAR 0.92
PF137592OG-FeII_Oxy_5 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0181Porphobilinogen deaminaseCoenzyme transport and metabolism [H] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.40 %
All OrganismsrootAll Organisms15.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10006883Not Available7808Open in IMG/M
3300000101|DelMOSum2010_c10014464Not Available4874Open in IMG/M
3300000101|DelMOSum2010_c10034904Not Available2712Open in IMG/M
3300000224|SI34jun09_10mDRAFT_1058893Not Available506Open in IMG/M
3300000265|LP_A_09_P04_10DRAFT_1041938Not Available711Open in IMG/M
3300000928|OpTDRAFT_10081115Not Available4942Open in IMG/M
3300000930|BpDRAFT_10487742Not Available518Open in IMG/M
3300001970|GOS2248_10089422Not Available1638Open in IMG/M
3300002131|M2t2BS1_1395637Not Available1489Open in IMG/M
3300002144|M2t2BS2_10705920Not Available1219Open in IMG/M
3300003216|JGI26079J46598_1031993All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1192Open in IMG/M
3300003346|JGI26081J50195_1004645Not Available4193Open in IMG/M
3300003409|JGI26088J50261_1012447Not Available2682Open in IMG/M
3300003410|JGI26086J50260_1059533Not Available847Open in IMG/M
3300003580|JGI26260J51721_1044604Not Available716Open in IMG/M
3300004097|Ga0055584_100233007Not Available1877Open in IMG/M
3300004097|Ga0055584_100270990Not Available1736Open in IMG/M
3300005611|Ga0074647_1001761Not Available8105Open in IMG/M
3300006026|Ga0075478_10010498All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3152Open in IMG/M
3300006752|Ga0098048_1000229Not Available28639Open in IMG/M
3300006793|Ga0098055_1006540All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5509Open in IMG/M
3300006867|Ga0075476_10335802Not Available525Open in IMG/M
3300006868|Ga0075481_10121656Not Available961Open in IMG/M
3300007609|Ga0102945_1007655All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2693Open in IMG/M
3300007609|Ga0102945_1022707Not Available1368Open in IMG/M
3300009000|Ga0102960_1183133Not Available750Open in IMG/M
3300009001|Ga0102963_1364975Not Available567Open in IMG/M
3300009079|Ga0102814_10688344Not Available562Open in IMG/M
3300009172|Ga0114995_10040761Not Available2681Open in IMG/M
3300009172|Ga0114995_10052179Not Available2332Open in IMG/M
3300009172|Ga0114995_10075547Not Available1899Open in IMG/M
3300009172|Ga0114995_10079807Not Available1842Open in IMG/M
3300009420|Ga0114994_10064127Not Available2518Open in IMG/M
3300009420|Ga0114994_10088505Not Available2110Open in IMG/M
3300009420|Ga0114994_10267658Not Available1142Open in IMG/M
3300009420|Ga0114994_10736056Not Available642Open in IMG/M
3300009436|Ga0115008_10016486All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium6012Open in IMG/M
3300009441|Ga0115007_10895759Not Available605Open in IMG/M
3300009495|Ga0115571_1205674Not Available804Open in IMG/M
3300009507|Ga0115572_10051142All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2622Open in IMG/M
3300010883|Ga0133547_11729346All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1160Open in IMG/M
3300012525|Ga0129353_1589933Not Available757Open in IMG/M
3300012928|Ga0163110_11564312Not Available536Open in IMG/M
3300012936|Ga0163109_10015639All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5624Open in IMG/M
3300012936|Ga0163109_10091306Not Available2230Open in IMG/M
3300014042|Ga0117790_1042592Not Available828Open in IMG/M
3300016733|Ga0182042_1216097Not Available744Open in IMG/M
3300016736|Ga0182049_1176418Not Available1394Open in IMG/M
3300017763|Ga0181410_1014310Not Available2702Open in IMG/M
3300017776|Ga0181394_1255051Not Available524Open in IMG/M
3300017818|Ga0181565_10628451Not Available687Open in IMG/M
3300017949|Ga0181584_10000192Not Available40209Open in IMG/M
3300017950|Ga0181607_10036266Not Available3491Open in IMG/M
3300017967|Ga0181590_10068739All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2805Open in IMG/M
3300018036|Ga0181600_10006985All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria8433Open in IMG/M
3300018049|Ga0181572_10111380Not Available1803Open in IMG/M
3300018417|Ga0181558_10100908Not Available1794Open in IMG/M
3300018420|Ga0181563_10069249Not Available2403Open in IMG/M
3300018423|Ga0181593_10865899Not Available628Open in IMG/M
3300020053|Ga0181595_10185592Not Available926Open in IMG/M
3300020175|Ga0206124_10209805Not Available766Open in IMG/M
3300020347|Ga0211504_1048581Not Available1017Open in IMG/M
3300020380|Ga0211498_10089732Not Available1153Open in IMG/M
3300020397|Ga0211583_10073993Not Available1302Open in IMG/M
3300020438|Ga0211576_10185540Not Available1113Open in IMG/M
3300020438|Ga0211576_10605164Not Available545Open in IMG/M
3300020440|Ga0211518_10534968Not Available524Open in IMG/M
3300020463|Ga0211676_10153442Not Available1444Open in IMG/M
3300020469|Ga0211577_10284994Not Available1052Open in IMG/M
3300021364|Ga0213859_10430153Not Available581Open in IMG/M
3300021375|Ga0213869_10058140Not Available1987Open in IMG/M
3300021389|Ga0213868_10410529Not Available747Open in IMG/M
3300021957|Ga0222717_10053532All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2610Open in IMG/M
3300021958|Ga0222718_10344559Not Available760Open in IMG/M
3300021958|Ga0222718_10349895Not Available752Open in IMG/M
3300021959|Ga0222716_10084426All Organisms → Viruses → Predicted Viral2174Open in IMG/M
3300021960|Ga0222715_10028388Not Available4059Open in IMG/M
3300021964|Ga0222719_10327800Not Available981Open in IMG/M
3300022833|Ga0222645_103570All Organisms → cellular organisms → Bacteria4417Open in IMG/M
3300022839|Ga0222649_1018546Not Available925Open in IMG/M
(restricted) 3300023109|Ga0233432_10017668All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5316Open in IMG/M
(restricted) 3300023109|Ga0233432_10029193Not Available3806Open in IMG/M
(restricted) 3300023109|Ga0233432_10262722Not Available819Open in IMG/M
3300023180|Ga0255768_10431728Not Available688Open in IMG/M
3300024191|Ga0228636_1037876Not Available1168Open in IMG/M
3300024235|Ga0228665_1130910Not Available515Open in IMG/M
3300025083|Ga0208791_1039946Not Available851Open in IMG/M
3300025108|Ga0208793_1031212Not Available1772Open in IMG/M
3300025483|Ga0209557_1117176Not Available523Open in IMG/M
3300025570|Ga0208660_1031466Not Available1452Open in IMG/M
3300025608|Ga0209654_1005696Not Available6505Open in IMG/M
3300025610|Ga0208149_1040166All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1244Open in IMG/M
3300025626|Ga0209716_1050411Not Available1376Open in IMG/M
3300025626|Ga0209716_1170064Not Available547Open in IMG/M
3300025695|Ga0209653_1165704Not Available635Open in IMG/M
3300025696|Ga0209532_1153900Not Available708Open in IMG/M
3300027751|Ga0208304_10057115All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1509Open in IMG/M
3300027752|Ga0209192_10012907Not Available4437Open in IMG/M
3300027752|Ga0209192_10016696All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3762Open in IMG/M
3300027788|Ga0209711_10154484Not Available1098Open in IMG/M
3300027810|Ga0209302_10043036Not Available2444Open in IMG/M
3300027810|Ga0209302_10372244Not Available649Open in IMG/M
3300027813|Ga0209090_10037007Not Available2786Open in IMG/M
3300027813|Ga0209090_10248189Not Available900Open in IMG/M
3300027813|Ga0209090_10313454Not Available775Open in IMG/M
3300031519|Ga0307488_10017976Not Available5716Open in IMG/M
3300031519|Ga0307488_10031077Not Available4254Open in IMG/M
3300031519|Ga0307488_10048159Not Available3315Open in IMG/M
3300031851|Ga0315320_10445637Not Available886Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine21.10%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh11.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine8.26%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine7.34%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.50%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.50%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.59%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.67%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water3.67%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.75%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.75%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine2.75%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.75%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.75%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.83%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.83%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.83%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water1.83%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine1.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.92%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.92%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.92%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment0.92%
HypersalineEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline0.92%
Epidermal MucusHost-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000224Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10mEnvironmentalOpen in IMG/M
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001970Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033EnvironmentalOpen in IMG/M
3300002131Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)EnvironmentalOpen in IMG/M
3300002144Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)EnvironmentalOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003346Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNAEnvironmentalOpen in IMG/M
3300003409Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNAEnvironmentalOpen in IMG/M
3300003410Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNAEnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005611Saline surface water microbial communities from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007609Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300014042Epidermal mucus viral and microbial communities from European eel in Spain - Ebro delta (0.22 um filter)Host-AssociatedOpen in IMG/M
3300016733Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016736Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011508BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018423Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020053Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020380Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)EnvironmentalOpen in IMG/M
3300020397Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022833Saline water microbial communities from Ace Lake, Antarctica - #292EnvironmentalOpen in IMG/M
3300022839Saline water microbial communities from Ace Lake, Antarctica - #337EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300024191Seawater microbial communities from Monterey Bay, California, United States - 45DEnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027752Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027810Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1000688383300000101MarineMRGSFSYENLMYHTSHEDREILNKIIKDNIETTEKTKLPLL*
DelMOSum2010_1001446443300000101MarineMRGSISYNELMYNISRDDIEIYNKIIKDNIETTEKTNLPLL*
DelMOSum2010_1003490423300000101MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIDATEKTRMPLI*
SI34jun09_10mDRAFT_105889323300000224MarineMRGSFTYENLMYHTTVEDREILNKIIKDNIETTEKTKMPLL*
LP_A_09_P04_10DRAFT_104193823300000265MarineMRGSLTYKDLMYHISNDDMEIFQNIIKDNIDATEKTRMPLI*
OpTDRAFT_1008111523300000928Freshwater And MarineMRGGISYTDLMYHISHDDLEIFNKIIADNIETVEKTKLPLL*
BpDRAFT_1048774223300000930Freshwater And MarineMVYERITYXXXLMYHISNDDMEIFQNIIKDNIDATEKTRMPLI*
GOS2248_1008942223300001970HypersalineMRGSLTYQDIMYHISYEDVEILNKIIKDNIETTEKTKLALL*
M2t2BS1_139563723300002131MarineMRGSFTYDDLMYKISHEDLEVLNQIIKENIETTEKTRMPLL*
M2t2BS2_1070592023300002144MarineMRGSLSYTDLMYRISYEDLEIFNNIIKDNIETTEKTRMPLL*
JGI26079J46598_103199323300003216MarineMRGSINYIDLMYHISHDDLEIFNRIIKDNIETTEKTRLPLL*
JGI26081J50195_100464533300003346MarineMRGSFTYSDLMYKISHEDLEILNRIIKDNIETTEKTRMPLI*
JGI26088J50261_101244733300003409MarineMRGAMSYDDLFFKISFEDREIMNAIVKDNIETTNKTKMPLI*
JGI26086J50260_105953323300003410MarineMRGSITYKDLMYNISRDDIEIFNNIIKDNIDATEKTRLPLI*
JGI26260J51721_104460423300003580MarineMRGSMSYHDLMYKISTDDLEIFNKIIQDNLETVEKTKLPLL*
Ga0055584_10023300723300004097Pelagic MarineMRGSISYYELMHVITNEDREVFYKIIKENIETVEKTKMPLL*
Ga0055584_10027099023300004097Pelagic MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIETTEKTRMPLI*
Ga0074647_100176133300005611Saline Water And SedimentMRGSMTYHDLMHTISADDREIFSKIIKENIELVEKTKLPLL*
Ga0075478_1001049833300006026AqueousMRGSMTYHDLMHTISADDREIFGKIIKENIETVEKTKLPLL*
Ga0098048_1000229153300006752MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIEATEKTKLPLI*
Ga0098055_100654023300006793MarineMRGSLTYKDLMYHISNDDMEIFNNIIKDNIDATEKTRMPLI*
Ga0075476_1033580223300006867AqueousMRGSLTYKDLMYHISNEDMEIFRNIIKDNIDATEKTRMPLI*
Ga0075481_1012165623300006868AqueousMRGSLTYKDLMYHITNDDMEIFNNIIKDNIDATEKTKMPLI*
Ga0102945_100765523300007609Pond WaterMRGSITYQNLMYNITRDDIEILNNIIKDNIEATEKTRLPLI*
Ga0102945_102270713300007609Pond WaterTYQNLMYNITRDDIEILNNIIKDNIEATEKTRLPLV*
Ga0102960_118313313300009000Pond WaterMRGSISYQDLMYSISREDIEIFNNIIKDNIEATEKTRLPLI*
Ga0102963_136497523300009001Pond WaterRGSISYYELMHVITNEDREIFYKIIKENIETVEKTKLPLL*
Ga0102814_1068834413300009079EstuarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIEATEKTRMPLI*
Ga0114995_1004076123300009172MarineMRGSISYNELMYDISRDDIEIYNKIIKDNIETTEKTNLPLL*
Ga0114995_1005217923300009172MarineMRGSITYHELMHVITNEDREVFYKIIKENIETVEKTKMPLL*
Ga0114995_1007554723300009172MarineMRGSFGYHDLMYKISNDDIEVMNNIIKDNIEATEKTKMPLI*
Ga0114995_1007980723300009172MarineMRGSFSYHDLMYKISNDDIGIMNNIIKDNIEATEKTKMPLI*
Ga0114994_1006412733300009420MarineMRGSFTYHDLMYKISHEDLEILNKIIKDNIETTEKTRMPLI*
Ga0114994_1008850533300009420MarineMRGSFSYENLMYHTSIEDREILNKIIKDNIETTEKTRMPLI*
Ga0114994_1026765823300009420MarineMRGSFTYDDLMYKITSEDLEILNQIVKDNIETTEKTRLPLM*
Ga0114994_1073605623300009420MarineMRGSMSYHDLMYKISRDDIEVFDRIIKDNIETTEKTRMPLI*
Ga0115008_1001648623300009436MarineMRGSINYDALMHHITRDDIDIFQRIIKDNIETTEKTRMPLI*
Ga0115007_1089575913300009441MarineMRGSMAYHDLMYKISRDDIEVFDRIIKDNIETTEKTRMPLI*
Ga0115571_120567413300009495Pelagic MarineMRGSMSYHDLMYKISSDDLEIFNKIIQDNLDTVEKTKLPLL*
Ga0115572_1005114223300009507Pelagic MarineMRGSMSYHDLMYKISTDDLEIFNKIIQDNLDTVEKTKLPLL*
Ga0133547_1172934613300010883MarineMRGSISYNELMYDISRDDIEIYNKIIKDNIETTEKTNL
Ga0129353_158993323300012525AqueousRGSMTYHDLMHTISADDREIFGKIIKENIETVEKTKLPLL*
Ga0163110_1156431223300012928Surface SeawaterMRGAFSYHDLMYKISVDDLEILNKIIKDNIETTEKTRLPLV*
Ga0163109_1001563943300012936Surface SeawaterMRGSFSYHDLMYKITSEDLEILNKIIKENIETVEKTRLPLL*
Ga0163109_1009130623300012936Surface SeawaterMRGSISYHDLMYKISNDDLELFNRIIKENIETTEKTRLPLL*
Ga0117790_104259223300014042Epidermal MucusMRGSMTYQDLMYKVSADDIEIFTRIIKDNIEATKESKLPLI*
Ga0182042_121609723300016733Salt MarshYMRGSISYIDLMYHISHEDLEIYNRIIKDNIETTEKTRMPLL
Ga0182049_117641813300016736Salt MarshISYIDLMYHISHEDLEIYNRIIKDNIETTEKTRMPLL
Ga0181410_101431023300017763SeawaterMRGSISYHELMHVITNEDREVFYKIIKENIETVEKTKLPLL
Ga0181394_125505123300017776SeawaterMRGSISYYELMHVITNEDREIFYKIIKENIETVEKTK
Ga0181565_1062845123300017818Salt MarshMRGSFTYENLMYHISVEDRDILNKIVKDNIETTEKTRMPLV
Ga0181584_10000192153300017949Salt MarshMRGSVTYEDLMFNISHEDIEIFNNIIKENIEMTEKARMPLL
Ga0181607_1003626633300017950Salt MarshMRGSISYHELMHVITNEDREIFYKIIKENIETVEKTKLPLL
Ga0181590_1006873933300017967Salt MarshMRGSFSYHDLMYKITSEDLEILNKIIKDNIETVEKTRLPLL
Ga0181600_1000698523300018036Salt MarshMRGSVSYHDLMYKISYEDLEIFNRIIKENIETTEKTKLPLL
Ga0181572_1011138023300018049Salt MarshMRGSFSYHDLMYKITSEDLEILNKIIKENIETVEKTRLPLL
Ga0181558_1010090833300018417Salt MarshYMRGSISYHELMHVITNEDREIFYKIIKENIETVEKTKLPLL
Ga0181563_1006924923300018420Salt MarshMRGSFTYSDLMYKISHEDLEILNRIIKDNIETTEKTRMPLI
Ga0181593_1086589923300018423Salt MarshMRGSMSYNDLMYKISHEDIEILNRIIKDNIDATEKSKLPLL
Ga0181595_1018559213300020053Salt MarshGSFTYSDLMYKISHEDLEILNRIIKDNIETTEKTRMPLI
Ga0206124_1020980523300020175SeawaterMRGSISYYELMHVITNEDREVFYKIIKENIETVEKTKMPLL
Ga0211504_104858123300020347MarineMRGSFTYDDLMYKITPEDMEILNQIVKENIETTEKTRMPLI
Ga0211498_1008973223300020380MarineMRGAFSYHDLMYKISVDDLEILNKIIKDNIETTEKTRLPLV
Ga0211583_1007399323300020397MarineMRGSFTYDDLVFKITKEDREILNKIIKDNIEATKDSGMPIL
Ga0211576_1018554023300020438MarineMRGSISYHELMHVITNEDREVFYKIIKENIETVEKTKMPLL
Ga0211576_1060516423300020438MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIEATEKTRMPLI
Ga0211518_1053496823300020440MarineMRGAFSYHDLMYKISNDDLEVINNIVKDNIETTEKTRMPLI
Ga0211676_1015344223300020463MarineMRGSFTYENLMYHTSTEDREILNRIIKDNIEATEKTKLPLI
Ga0211577_1028499413300020469MarineMRGSVSYKELMYSLSHDDIEIYNKIIKDNIETTEKTNLPLI
Ga0213859_1043015313300021364SeawaterMRGSISYKELMYCISHEDIEIFNKIIKDNIETVEKTKLPLI
Ga0213869_1005814023300021375SeawaterMRGSISYYELMHVITNEDREIFYKIIKENIETVEKTKLPLL
Ga0213868_1041052913300021389SeawaterMRGSISYYELMHVITNEDREIFYKIIKENIETVEKTKLPLLXWLV
Ga0222717_1005353223300021957Estuarine WaterMRGSMSYHDLMYKISTDDLEIFNKIIQDNLETVEKTKLPLL
Ga0222718_1034455923300021958Estuarine WaterMRGAFSYHDLMYKISNDDLEVMNNIVKDNIDATEKTRMPLI
Ga0222718_1034989523300021958Estuarine WaterMRGSISYYELMHVITNEDREIFYKIIKENIETVEKTKMPLL
Ga0222716_1008442623300021959Estuarine WaterMWYMRGSVSYNEIMYDIDVSDYEIFNRIIKENWETTNKTGLPLV
Ga0222715_1002838823300021960Estuarine WaterMRGSVSYNEIMYDIDVSDYEIFNRIIKENWETTNKTGLPLV
Ga0222719_1032780023300021964Estuarine WaterMRGSLTYDDLMHTITVEDREILQKIIKENIDLVEKTKLPLL
Ga0222645_10357033300022833Saline WaterMRGSFTYDDLMYKISHEDLEVLNQIIKENIETTEKTRMPLM
Ga0222649_101854623300022839Saline WaterMRGSFTYSDLMYKISHEDLEILNRIIKDNIETTEKTRM
(restricted) Ga0233432_1001766843300023109SeawaterMRGSLTYKDLMYHISNDDMEIFQNIIKDNIDATEKTRMPLI
(restricted) Ga0233432_1002919323300023109SeawaterMRGSVSYHELMYNISHEDIEIYNRIIKDNIETTEKTNLPLI
(restricted) Ga0233432_1026272223300023109SeawaterMRGSITYHELMHVITNEDREVFYKIIKENIETVEKTKMPLL
Ga0255768_1043172823300023180Salt MarshMSYNDLMYKISHEDIEILNRIIKDNIDATEKSKLPLL
Ga0228636_103787623300024191SeawaterMRGSLTYKDLMYHISNEDMEIFQNIIKDNIDATEKTKLPLI
Ga0228665_113091023300024235SeawaterSLTYKDLMYHISNEDMEIFQNIIKDNIDATEKTKLPLI
Ga0208791_103994623300025083MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIEATEKTKLPLI
Ga0208793_103121223300025108MarineMRGSLTYKDLMYHISNDDMEIFNNIIKDNIDATEKTKMPLI
Ga0209557_111717623300025483MarineMRGSINYIDLMYHISHDDLEIFNRIIKDNIETTEKTRLPLL
Ga0208660_103146623300025570AqueousMRGSFTYENLMYHTTVEDREILNKIIKDNIETTEKTKMPLL
Ga0209654_100569643300025608MarineMRGAMSYDDLFFKISFEDREIMNAIVKDNIETTNKTKMPLI
Ga0208149_104016613300025610AqueousMRGSMTYHDLMHTISADDREIFGKIIKENIETVEKTKLPLL
Ga0209716_105041123300025626Pelagic MarineMRGAFSYHDLMYKISNDDLEVMNNIVKDNIETTEKTRMPLI
Ga0209716_117006423300025626Pelagic MarineMRGSMSYHDLMYKISTDDLEIFNKIIQDNLDTVEKTKLPLL
Ga0209653_116570423300025695MarineMRGSISYQDLMYSISREDIEIFNNIIKDNIEATEKTRMPLI
Ga0209532_115390023300025696Pelagic MarineMRGSMSYHDLMYKISSDDLEIFNKIIQDNLDTVEKTKLPLL
Ga0208304_1005711513300027751EstuarineMRGSMSYHDLMYKISTDDLEIFNKIIQDNLETVEKTKLP
Ga0209192_1001290723300027752MarineMRGSFGYHDLMYKISNDDIEVMNNIIKDNIEATEKTKMPLI
Ga0209192_1001669633300027752MarineMRGSISYNELMYDISRDDIEIYNKIIKDNIETTEKTNLPLL
Ga0209711_1015448413300027788MarineMRGSFTYDDLMYKITSEDLEILNQIVKDNIETTEKTRLPLM
Ga0209302_1004303623300027810MarineMRGSFTYHDLMYKISHEDLEILNKIIKDNIETTEKTRMPLI
Ga0209302_1037224413300027810MarineMRGSMAYHDLMYKISRDDIEVFDRIIKDNIETTEKTRMPLI
Ga0209090_1003700723300027813MarineMRGSFSYENLMYHTSIEDREILNKIIKDNIETTEKTRMPLI
Ga0209090_1024818913300027813MarineMRGSITYHELMHVITNEDREVFYKIIKENIETVEKTKM
Ga0209090_1031345423300027813MarineMRGSISYNELMYNISRDDIEIYNKIIKDNIETTEKTNLPLL
Ga0307488_1001797623300031519Sackhole BrineMRGSFTYNDLMYKISHDDLEVLNQIVKDNIETTEKTRMPLM
Ga0307488_1003107743300031519Sackhole BrineMRGSLSYTDLMYRISYEDLEIFNNIIKDNIETTEKTRMPLL
Ga0307488_1004815923300031519Sackhole BrineMRGSFNYHDLMYKISHEDLEILNNIVRDNIEATEKTRMPLI
Ga0315320_1044563723300031851SeawaterMRGGISYTDLMYHISHDDLEIFNKIIADNIETVEKTKLPL


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