Basic Information | |
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Family ID | F088700 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 44 residues |
Representative Sequence | RVAFIRGDQPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL |
Number of Associated Samples | 89 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 99.08 % |
% of genes from short scaffolds (< 2000 bps) | 81.65 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.275 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.440 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.459 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.29% β-sheet: 8.57% Coil/Unstructured: 67.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Vadose Zone Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J11758_120785381 | 3300000789 | Soil | GDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
JGI25382J37095_100767981 | 3300002562 | Grasslands Soil | TRVAFIRGDQPVEFGVVAKVIDVMRSSGVASVGLLTPDLEKGF* |
JGI25616J43925_103629722 | 3300002917 | Grasslands Soil | TRVAFIRGDGPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0058896_14329661 | 3300004101 | Forest Soil | FEKLGPRIEELFKQRASRIAFIRGDRPVEFGVVANVIDVMHTSGISSVGLLTPDLEKGF* |
Ga0068961_12916881 | 3300004612 | Peatlands Soil | IEEIFKQRASRIAFIRGDQPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGF* |
Ga0066680_104397431 | 3300005174 | Soil | ARVAFIRGDAPVEFGVVASVIDVMHTSGIASVGLLTPDLERVL* |
Ga0066690_104221821 | 3300005177 | Soil | IFKLRATRVAFIRGDKPVEFGVVAEVIDVMHAAGIAPVGLLTPELEKAF* |
Ga0070705_1002095451 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | AFVRGENPVEFQVVAQVIDDMHAAGISSVGLLTPELEQNH* |
Ga0066687_108953092 | 3300005454 | Soil | GSRIEEIFKLRATRVAFIRGDKPVEFGVVAEVIDVMHAAGIAPVGLLTPELEKAF* |
Ga0066699_106457221 | 3300005561 | Soil | RGDKPVEFGVVAEVIDVMHVSGIASVGLLTPELEKAF* |
Ga0066705_109648552 | 3300005569 | Soil | FKLRATRVAFIRGDKPVEFGVVAEVIDVMHAAGIASVGLLTPELEKAF* |
Ga0066708_100104791 | 3300005576 | Soil | IEEIFKLRATRVAFIRGDKPVEFGVVAEVIDVMHAAGIASVGLLTPELEKAF* |
Ga0068860_1000403575 | 3300005843 | Switchgrass Rhizosphere | FVRGENPVEFQVVAQVIDDMHAAGISSVGLLTPELEQNH* |
Ga0075029_1010973492 | 3300006052 | Watersheds | QPVEFGVVANVIDVMHTSGIASVGLLTTGLEKGF* |
Ga0075017_1000751873 | 3300006059 | Watersheds | FKQRASHVAFIRGDEPVQFGVVANVIDVMHTSGIASVGLLTPGLEKGF* |
Ga0075019_100330051 | 3300006086 | Watersheds | LEEIFRLRASRAAFIKGDGVVEFAKVASVIDVMHSSGVDSVGLLTPELEKGL* |
Ga0075030_1001006254 | 3300006162 | Watersheds | SRAAFIKGDGVVEFAKVASVIDVMHSSGVDSVGLLTPELEKGL* |
Ga0079222_101881251 | 3300006755 | Agricultural Soil | VAFIRGDQPVEFGVVANVIDVMHTSGVASVGLLTLELEKGF* |
Ga0079222_114504331 | 3300006755 | Agricultural Soil | IFKQRASRVAFIRGDRPVEFGVVAKVIDVMHTSGIASVGLLTPDLENAF* |
Ga0066660_101494123 | 3300006800 | Soil | EIFKSRATRVAFIRGEKPVEFGVVANVIDVMHTSGVASVGLLTPELEKGF* |
Ga0075426_100178681 | 3300006903 | Populus Rhizosphere | VAFIRGDQPVEFGVAAKVIDVMHTSGIASVGLLTPELEEAF* |
Ga0099791_100270053 | 3300007255 | Vadose Zone Soil | KLRAVRVAFIRGDAPVEFGVVAKVIDALHTSGIASVGLLTPDLEKGL* |
Ga0099794_102410672 | 3300007265 | Vadose Zone Soil | FIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0099829_104973852 | 3300009038 | Vadose Zone Soil | IFKVRIDRTAFIRGDSSVEFSVVAKVIDVMHTAGVAPVGLLTPELEKDL* |
Ga0099829_105305302 | 3300009038 | Vadose Zone Soil | FICGDGPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0099829_109833972 | 3300009038 | Vadose Zone Soil | IFKQRATRVAFIRGDAPVEFGVVASVIDVMHTSGIASVGLLTPDLERVL* |
Ga0099829_112523961 | 3300009038 | Vadose Zone Soil | RVAFIRGDQPVEFGVVAQVIDVMHTSGIGSVGLLTPDLEKGL* |
Ga0099829_112984212 | 3300009038 | Vadose Zone Soil | RVAFIRGDGPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0099830_113075252 | 3300009088 | Vadose Zone Soil | RASRVAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0066709_1041477531 | 3300009137 | Grasslands Soil | DKLGPRIEEIFKLRATRVAFIRGDKPVEFGVVAEVIDVMHASGIASVGLLSPELEKAF* |
Ga0126384_109154681 | 3300010046 | Tropical Forest Soil | ASRAAFVRGDSPVEFAVVVRVIDTMRAAGVTSIGLLTPELEKDR* |
Ga0127491_11401731 | 3300010111 | Grasslands Soil | DKLGSRIEEIFKSRATRVAFIRGEKPVEFGVVANVIDVMHTSGVASVGLLTPELEKGF* |
Ga0134088_101578011 | 3300010304 | Grasslands Soil | TAFIQGDSSVEFSVVAKVIDVMHTAGVAPVGLLTPELEKGL* |
Ga0134063_103178722 | 3300010335 | Grasslands Soil | KLRATRVAFVRGDGTVEFGVVAKVIDVMQTSGIASVGLLTPDLDKGL* |
Ga0126348_13340251 | 3300010862 | Boreal Forest Soil | GPVEFGVVAKVIDVMHTSGIASVGLLTPDLDKGL* |
Ga0138526_11177671 | 3300011082 | Peatlands Soil | EIFKQRATRVAFIRGDQPVEFGVVANVIDVMHTSGIASVGLLTPDLEKSF* |
Ga0138576_10093311 | 3300011088 | Peatlands Soil | DQPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGF* |
Ga0137392_111402322 | 3300011269 | Vadose Zone Soil | GPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0137391_114980321 | 3300011270 | Vadose Zone Soil | RVAFIRGDQPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL* |
Ga0137393_110984211 | 3300011271 | Vadose Zone Soil | RIEEIFKQRATRVAFIRGDQPVEFGVVANVIDVMHTSGIASVGLLTPDLEKAF* |
Ga0137388_101574351 | 3300012189 | Vadose Zone Soil | QPVEFGVVAKVIDVMRSSGIASVGLLTPGLEKGS* |
Ga0137388_104180181 | 3300012189 | Vadose Zone Soil | RTAFIRGDSSVEFSVVAKVIDVMHTAGVAPVGLLTPELEKDL* |
Ga0137363_105947692 | 3300012202 | Vadose Zone Soil | RGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137363_116659131 | 3300012202 | Vadose Zone Soil | GPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137399_101877133 | 3300012203 | Vadose Zone Soil | QRASRIAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137381_106541072 | 3300012207 | Vadose Zone Soil | RVAFIRGDGPVEFGVVAKVIDVMHTSGVASVGLLTPDLEKGF* |
Ga0137376_104926251 | 3300012208 | Vadose Zone Soil | VEFGVVAKVIDVMHTSGIASVGLLTPDLEKGLGQF* |
Ga0137376_113493242 | 3300012208 | Vadose Zone Soil | DGTVEFGVVAKVIDVMQTSGIASVGLLTPDLDKGL* |
Ga0137361_119285352 | 3300012362 | Vadose Zone Soil | AFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137390_107214092 | 3300012363 | Vadose Zone Soil | IFKVRIDRTAFIRGDSSVEFSVVAKVIDVMHTAGVAPVGLLTPEQEKDL* |
Ga0137390_115415652 | 3300012363 | Vadose Zone Soil | GPVEFGVVAKVIDVMHTSGIASVGLLTPGLEKGL* |
Ga0134058_10562921 | 3300012379 | Grasslands Soil | LGSRIEEIFKSRATRVAFIRGEKPVEFGVVANVIDVMHTSGVASVGLLTPELEKGF* |
Ga0134040_12707061 | 3300012389 | Grasslands Soil | GRFQAARDAFIRGDGAVEFRVVAKVIDVMHTSGIASVGLLTRDLEKGLGRF* |
Ga0134041_10361882 | 3300012405 | Grasslands Soil | VEFGVVASVIDVMYTSGIASVGLLAPHLEKGLGQF* |
Ga0134045_12527331 | 3300012409 | Grasslands Soil | IFKSRATRVAFIRGEKPVEFGVVANVIDVMHTSGVASVGLLTPELEKGF* |
Ga0137358_106797461 | 3300012582 | Vadose Zone Soil | IAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137397_102939782 | 3300012685 | Vadose Zone Soil | SRIAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL* |
Ga0137396_100548764 | 3300012918 | Vadose Zone Soil | RGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDKGL* |
Ga0187825_101526411 | 3300017930 | Freshwater Sediment | QSRLGEIFKMRASRIAFIRGDRAVEFSTVARVIDVMHGVGISSVGLLTPDLEKGL |
Ga0187825_103676852 | 3300017930 | Freshwater Sediment | RATRVAFIRGDSPVEFGVVARVIDVMHTVGIASVGLLTPDLEKGL |
Ga0137408_12903481 | 3300019789 | Vadose Zone Soil | AACLASRTAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDQGL |
Ga0210403_100650367 | 3300020580 | Soil | KMRASRIAFIRGDAPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL |
Ga0210403_104867581 | 3300020580 | Soil | KPRATRVAFIRGDGPVEFGVVAQVIDVMHASGIASIGLLTPGLEKGL |
Ga0210403_108421611 | 3300020580 | Soil | IRGDAPVEFEVVARVIDVMHTSGIASVGLLTPDLEKGF |
Ga0210403_109295701 | 3300020580 | Soil | KLRATRVAFVRGDGTVEFGVVAKVIDVMQSSGVASVGLLTPDLEKGL |
Ga0210399_100682531 | 3300020581 | Soil | GDKPVEFGVVANVIDVMHTSGIASVGLLTPELDKGL |
Ga0210399_108575042 | 3300020581 | Soil | NHMAFVRGDAGIEYQAVAKVIDVMQSAGISSVGLLTPQLERGH |
Ga0210401_100138358 | 3300020583 | Soil | RTAFIRGDKPVEFGVVANVIDVMHTSGIASVGLLTPELDKGL |
Ga0210404_104083442 | 3300021088 | Soil | TAFVSGDSAIEFQVVAKVIDVMDAAGISSVGLLTPQLEKGH |
Ga0210408_104378841 | 3300021178 | Soil | AFIRGDAPVEFGVVAKVIDALHTSGIASVGLLTPDLEKGL |
Ga0210384_100232391 | 3300021432 | Soil | IRGDKPVEFGVVANVIDVMHTSGIASVGLLTPDLDKGL |
Ga0222728_10881161 | 3300022508 | Soil | EIFKQRASRIAFIRGDRPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGF |
Ga0242656_10807342 | 3300022525 | Soil | FKQRASRIAFIRGDRPVEFGVVANVIDVMHTSGISSVGLLTPDLEKGF |
Ga0242654_102951332 | 3300022726 | Soil | AFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPGLEKGL |
Ga0137417_11254191 | 3300024330 | Vadose Zone Soil | GTVEFGVVAKVIDDVMQTSGIASVGLLTPDLEKGL |
Ga0137417_11506193 | 3300024330 | Vadose Zone Soil | RGDAPVEFGVVAKVIDALHTSGIASVGLLTPDLEKGL |
Ga0207665_104665192 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MRATRVAFIRGDGPVEFGVVANVIDVIHTSGIASVGLLTPDLEKGLGQF |
Ga0209890_100536783 | 3300026291 | Soil | TAFVRGDGTVEFQAVAKVIDVMQSAGISSVGLLTPQLENGH |
Ga0209238_10289801 | 3300026301 | Grasslands Soil | FKLRATRVAFIRGDGAVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGLGQF |
Ga0209471_11628001 | 3300026318 | Soil | FDKLGSRIEEIFKLRATRVAFIRGDKPVEFGVVAEVIDVMHASGIASVGLLTPELEKAF |
Ga0209375_10645371 | 3300026329 | Soil | FIRGDGPVEFGVVASVIDVMYTSGIASVGLLTPDLEKGLGQF |
Ga0257173_10202381 | 3300026360 | Soil | ASRIAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDRGL |
Ga0209806_10999371 | 3300026529 | Soil | IFKLRATRVAFIRGDKPVEFGVVAEVIDVMHAAGIAPVGLLTPELEKAF |
Ga0209160_13272482 | 3300026532 | Soil | VSFDKLGSRIEEIFKSRATRVAFIRGEKPVEFGVVANVIDVMHTSGVASVGLLTPELEKG |
Ga0209056_100530745 | 3300026538 | Soil | RGDGPVEFGVVASVIDVMYTSGIASVGLLTPDLEKGLGQF |
Ga0209648_103602772 | 3300026551 | Grasslands Soil | GDQPVEFGVVANVIDVMHASGIASVGLLTPDLEKAF |
Ga0209648_104762582 | 3300026551 | Grasslands Soil | RLAFIRGDEPVEFGVVAKVIDVMHTSGIASVGLLTPDLEKGL |
Ga0209419_10527171 | 3300027537 | Forest Soil | DAAVEFQVVAKVIDVMQAAGISSVGLLTPQLEQGH |
Ga0209220_10091681 | 3300027587 | Forest Soil | KLRAFRVAFIRGDAPVEFGVVAKVIDALHTSGIASVGLLTPDLEKGL |
Ga0209329_10422542 | 3300027605 | Forest Soil | ERLGNRIEEVFKLRATRVAFVRGDGTVEFGVVAKVLDVMQSSGIASVGLLTPDLEKGL |
Ga0208988_10918442 | 3300027633 | Forest Soil | GDAPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGL |
Ga0209076_10674262 | 3300027643 | Vadose Zone Soil | DQPVEFGVVAQVIDVMHTSGIASVGLLTPDLEKGL |
Ga0209388_10583331 | 3300027655 | Vadose Zone Soil | DAPVEFGVVAKVIDALHTSGIASVGLLTPDLEKGL |
Ga0209180_100343321 | 3300027846 | Vadose Zone Soil | AFIRGESPVEFGVVAKVIDVMQTAGIASIGLLTPELEKGH |
Ga0209180_100658101 | 3300027846 | Vadose Zone Soil | QRATRVAFIRGDAPVEFGVVASVIDVMHTSGIASVGLLTPDLERVL |
Ga0209067_100519393 | 3300027898 | Watersheds | IKGDGVVEFAKVASVIDVMHSSGVDSVGLLTPELEKGL |
Ga0209488_106807562 | 3300027903 | Vadose Zone Soil | RATRVAFIRGDKPVEFGVVAKVIDVMHVSGVASVGLLTPELENAF |
Ga0209006_100219971 | 3300027908 | Forest Soil | GDSGIEFQVVAKVIDVMDAAGISSVGLLTPQLEKGR |
Ga0170834_1083146461 | 3300031057 | Forest Soil | VAFVRGENPVEFQAVAQVIDDMRAAGISSVGLLTPELDLNH |
Ga0170824_1018150431 | 3300031231 | Forest Soil | HIAFIRGDRPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGF |
Ga0307474_107796501 | 3300031718 | Hardwood Forest Soil | SRTNHTAFIRGGAAVEFQVVAKVIDVMQAAGISSVGLLTPRLERGHSAR |
Ga0307473_105513391 | 3300031820 | Hardwood Forest Soil | LRATRVAFIRGDGPVEFGVVANVIDVMHTSGIASVGLLTPDLEKGLGQF |
Ga0307473_106999212 | 3300031820 | Hardwood Forest Soil | ATRVAFVRGDGTVEFGVVAKVLDVMQSSGVASVGLLTPDLEKGL |
Ga0307473_111411851 | 3300031820 | Hardwood Forest Soil | TAFVRGDAPVEFAVVARVIDSMRGAGIVTVGLLTPELEKDSRTR |
Ga0307479_103188271 | 3300031962 | Hardwood Forest Soil | AFIRGAAAVEFQLFAKVIDVMQAAGISSVGLLTPRLEQGHSAR |
Ga0306924_106658472 | 3300032076 | Soil | LKQVFELRASRAAFVRGEAPVEFAVIARVIDTLHSAGVTSVGLLTPELEKGR |
Ga0307470_102663001 | 3300032174 | Hardwood Forest Soil | VRGDASVEFQVVAKVIDVMQSAGISSVGLLTPQLERVASNGH |
Ga0307471_1006127451 | 3300032180 | Hardwood Forest Soil | KQRASRIAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPDLDKGL |
Ga0307471_1015358181 | 3300032180 | Hardwood Forest Soil | RAARIAFIRGDGPVEFGVVAKVIDVMHTSGIASVGLLTPGLEKGL |
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