NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088686

Metagenome Family F088686

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088686
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 59 residues
Representative Sequence MMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIAVGLIILALIGFQIGLRRSQ
Number of Associated Samples 61
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.73 %
% of genes near scaffold ends (potentially truncated) 25.69 %
% of genes from short scaffolds (< 2000 bps) 85.32 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.817 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(30.275 % of family members)
Environment Ontology (ENVO) Unclassified
(51.376 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(75.229 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 62.07%    β-sheet: 0.00%    Coil/Unstructured: 37.93%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF04392ABC_sub_bind 2.75
PF13443HTH_26 1.83
PF13374TPR_10 0.92
PF02627CMD 0.92
PF00501AMP-binding 0.92
PF00196GerE 0.92
PF00923TAL_FSA 0.92
PF00975Thioesterase 0.92
PF12071DUF3551 0.92
PF06912DUF1275 0.92
PF01068DNA_ligase_A_M 0.92
PF13202EF-hand_5 0.92
PF10518TAT_signal 0.92
PF00903Glyoxalase 0.92
PF02738MoCoBD_1 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 2.75
COG0176Transaldolase/fructose-6-phosphate aldolaseCarbohydrate transport and metabolism [G] 0.92
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.92
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.92
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.92
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.92
COG3619Uncharacterized membrane protein YoaK, UPF0700 familyFunction unknown [S] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.82 %
All OrganismsrootAll Organisms20.18 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000580|AF_2010_repII_A01DRAFT_1005969Not Available1979Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10022364Not Available1512Open in IMG/M
3300004633|Ga0066395_10000625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales13107Open in IMG/M
3300004633|Ga0066395_10018902Not Available2706Open in IMG/M
3300004633|Ga0066395_10508631All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SK17695Open in IMG/M
3300005332|Ga0066388_100382706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2053Open in IMG/M
3300005332|Ga0066388_100879370Not Available1477Open in IMG/M
3300005332|Ga0066388_101010453Not Available1394Open in IMG/M
3300005332|Ga0066388_101513773All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1174Open in IMG/M
3300005332|Ga0066388_101725230All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae1109Open in IMG/M
3300005332|Ga0066388_101877714Not Available1068Open in IMG/M
3300005332|Ga0066388_102591308All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales923Open in IMG/M
3300005332|Ga0066388_103791374Not Available771Open in IMG/M
3300005332|Ga0066388_103970432Not Available754Open in IMG/M
3300005332|Ga0066388_106925329All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium570Open in IMG/M
3300005332|Ga0066388_107761088Not Available537Open in IMG/M
3300005764|Ga0066903_100963078Not Available1554Open in IMG/M
3300005764|Ga0066903_101594428Not Available1237Open in IMG/M
3300005764|Ga0066903_107344705Not Available569Open in IMG/M
3300006755|Ga0079222_11363751Not Available653Open in IMG/M
3300006804|Ga0079221_10181642All Organisms → cellular organisms → Bacteria → Proteobacteria1134Open in IMG/M
3300006804|Ga0079221_10200928All Organisms → cellular organisms → Bacteria1092Open in IMG/M
3300006954|Ga0079219_11463321Not Available615Open in IMG/M
3300009792|Ga0126374_10033082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2449Open in IMG/M
3300009792|Ga0126374_10077420Not Available1804Open in IMG/M
3300009792|Ga0126374_10604985Not Available810Open in IMG/M
3300010046|Ga0126384_11184565Not Available704Open in IMG/M
3300010046|Ga0126384_11734040Not Available591Open in IMG/M
3300010047|Ga0126382_10304605Not Available1198Open in IMG/M
3300010048|Ga0126373_10065131Not Available3275Open in IMG/M
3300010358|Ga0126370_10037201Not Available2992Open in IMG/M
3300010358|Ga0126370_12673325Not Available500Open in IMG/M
3300010360|Ga0126372_10307455Not Available1397Open in IMG/M
3300010361|Ga0126378_10182380Not Available2166Open in IMG/M
3300010361|Ga0126378_12084193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium647Open in IMG/M
3300010366|Ga0126379_10062461All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B123132Open in IMG/M
3300010376|Ga0126381_101764488Not Available894Open in IMG/M
3300010398|Ga0126383_11041117Not Available907Open in IMG/M
3300010398|Ga0126383_11852163Not Available692Open in IMG/M
3300015371|Ga0132258_11188265All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1928Open in IMG/M
3300016270|Ga0182036_11135075Not Available648Open in IMG/M
3300016294|Ga0182041_10722932Not Available884Open in IMG/M
3300016294|Ga0182041_11648321Not Available593Open in IMG/M
3300016319|Ga0182033_11289311All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300016319|Ga0182033_11403139Not Available629Open in IMG/M
3300016341|Ga0182035_11450978Not Available617Open in IMG/M
3300016357|Ga0182032_11781967Not Available538Open in IMG/M
3300016371|Ga0182034_10418535Not Available1103Open in IMG/M
3300016371|Ga0182034_10542401Not Available975Open in IMG/M
3300016371|Ga0182034_11644123Not Available564Open in IMG/M
3300016387|Ga0182040_10437862Not Available1033Open in IMG/M
3300016387|Ga0182040_10724116Not Available815Open in IMG/M
3300016387|Ga0182040_10811424Not Available771Open in IMG/M
3300016387|Ga0182040_11925188Not Available507Open in IMG/M
3300016404|Ga0182037_10151396Not Available1748Open in IMG/M
3300016404|Ga0182037_10634828Not Available909Open in IMG/M
3300016404|Ga0182037_11127575Not Available687Open in IMG/M
3300016404|Ga0182037_11829594Not Available543Open in IMG/M
3300016422|Ga0182039_11304044Not Available658Open in IMG/M
3300016422|Ga0182039_12216623Not Available507Open in IMG/M
3300017994|Ga0187822_10266139Not Available594Open in IMG/M
3300019888|Ga0193751_1005034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7463Open in IMG/M
3300021560|Ga0126371_10097612Not Available2919Open in IMG/M
3300021560|Ga0126371_12071049Not Available685Open in IMG/M
3300021560|Ga0126371_12519886Not Available623Open in IMG/M
3300021560|Ga0126371_13283600Not Available547Open in IMG/M
3300021560|Ga0126371_13778461Not Available510Open in IMG/M
3300027654|Ga0209799_1139916Not Available551Open in IMG/M
3300027680|Ga0207826_1051296Not Available1142Open in IMG/M
3300027680|Ga0207826_1105967Not Available772Open in IMG/M
3300027725|Ga0209178_1147006All Organisms → cellular organisms → Bacteria → Proteobacteria812Open in IMG/M
3300027725|Ga0209178_1338901Not Available560Open in IMG/M
3300031544|Ga0318534_10024127Not Available3267Open in IMG/M
3300031544|Ga0318534_10592899Not Available630Open in IMG/M
3300031546|Ga0318538_10343929Not Available805Open in IMG/M
3300031561|Ga0318528_10040459Not Available2328Open in IMG/M
3300031561|Ga0318528_10168431Not Available1169Open in IMG/M
3300031573|Ga0310915_10799621Not Available663Open in IMG/M
3300031681|Ga0318572_10194359Not Available1183Open in IMG/M
3300031744|Ga0306918_11057306Not Available629Open in IMG/M
3300031771|Ga0318546_10573625Not Available793Open in IMG/M
3300031779|Ga0318566_10451493Not Available631Open in IMG/M
3300031833|Ga0310917_10180186Not Available1407Open in IMG/M
3300031833|Ga0310917_10294052Not Available1098Open in IMG/M
3300031845|Ga0318511_10071892Not Available1430Open in IMG/M
3300031879|Ga0306919_10016040All Organisms → cellular organisms → Bacteria4399Open in IMG/M
3300031890|Ga0306925_10598471Not Available1164Open in IMG/M
3300031890|Ga0306925_10818316Not Available965Open in IMG/M
3300031890|Ga0306925_11420440Not Available683Open in IMG/M
3300031897|Ga0318520_10568800All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300031912|Ga0306921_10106926All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3247Open in IMG/M
3300031912|Ga0306921_12605615Not Available522Open in IMG/M
3300031942|Ga0310916_10359902Not Available1236Open in IMG/M
3300031945|Ga0310913_11290736Not Available506Open in IMG/M
3300031946|Ga0310910_11581417Not Available501Open in IMG/M
3300031954|Ga0306926_10644055Not Available1290Open in IMG/M
3300031954|Ga0306926_11191765All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli895Open in IMG/M
3300031954|Ga0306926_11691954Not Available722Open in IMG/M
3300031981|Ga0318531_10070833Not Available1507Open in IMG/M
3300032010|Ga0318569_10009811Not Available3558Open in IMG/M
3300032035|Ga0310911_10747388Not Available566Open in IMG/M
3300032044|Ga0318558_10543513Not Available580Open in IMG/M
3300032068|Ga0318553_10054951Not Available1968Open in IMG/M
3300032089|Ga0318525_10398158Not Available706Open in IMG/M
3300032205|Ga0307472_100266754Not Available1354Open in IMG/M
3300032261|Ga0306920_100213399Not Available2880Open in IMG/M
3300032261|Ga0306920_102044850Not Available801Open in IMG/M
3300032261|Ga0306920_102074896All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300033289|Ga0310914_10432727All Organisms → cellular organisms → Bacteria1191Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil30.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil21.10%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil19.27%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil18.35%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil5.50%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.83%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.92%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A01DRAFT_100596963300000580Forest SoilMMTVRQASHLIDWVIVGLIVIGGLLYFLGPASLRTDEVIVIGLIIFALIGFQIGLRRSQ*
AF_2010_repII_A001DRAFT_1002236433300000793Forest SoilLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0066395_10000625143300004633Tropical Forest SoilMMTVRQASHLIDWVIVGLIVIGGLLYFLGPASLRTDEVIVIGLIILALIGFQIGLRRSQ*
Ga0066395_1001890233300004633Tropical Forest SoilMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0066395_1050863123300004633Tropical Forest SoilMSAEQTGHLIDWAIVGLIVIGGLFYFFGPVALRTDDLIAIGSVILALIGCRIGLHR*
Ga0066388_10038270613300005332Tropical Forest SoilGKPMSAEQTGHLIDWAIVGLIVIGGLFYFFGPVALRTDDLIAIGSVILALIGCRIGLHRYRR*
Ga0066388_10087937033300005332Tropical Forest SoilMMSVSQASHLIDWVIAGLIVIGGLLYFFGPASLRTHEVIVVGLIILALIGFQIGLRRSQ*
Ga0066388_10101045333300005332Tropical Forest SoilMMSVEQTSQLLDWAIVGLILIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0066388_10151377333300005332Tropical Forest SoilMMTVRQASHLIDWVIAALIVIGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGLRRSQ*
Ga0066388_10172523013300005332Tropical Forest SoilLAPVRQTNHLIDWAIAALIVIGGLFYFFGPMALRTDDVIAVGLVILVLIGIRLGLRRYR*
Ga0066388_10187771413300005332Tropical Forest SoilMQTSQLVDWAIAGLIVIGGLFYFFGPVALRTDDVIAAGLAIFALIGFRVGLRRYRE*
Ga0066388_10259130823300005332Tropical Forest SoilMSVEQTSHLIDWAIVGVIVIGGLFYFFGPVALRTDDIVAIGSVILALIGCRIGLRRYRE*
Ga0066388_10379137413300005332Tropical Forest SoilMMSVEQTSHLIDWAIAGIIVIGGLFYFFGPVALRTDDVIAAGLVILALIGFRIGLRRYRE
Ga0066388_10397043223300005332Tropical Forest SoilLPPVRQTNHLIDWAIAGLIVIGGLFYFFGPLALRTDDVIAVGLVILVLIGIRLGGRRYPE
Ga0066388_10692532913300005332Tropical Forest SoilVKQTDHVIDWAIAGLIVIGGLFYFFGPVALRTDDVIAVGLAIIALIGIRLGLRRYRE*
Ga0066388_10776108823300005332Tropical Forest SoilMTVEQTSHLIDLAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0066903_10096307813300005764Tropical Forest SoilMMSVRQASHLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGLRRSQ*
Ga0066903_10159442813300005764Tropical Forest SoilMMTVRQASHLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ*
Ga0066903_10734470523300005764Tropical Forest SoilMRQTDHVVDWAIAGLIVIGGLFYFFGPVALRTDDVIAVGLAIIALIGVRLGLRRYRE*
Ga0079222_1136375123300006755Agricultural SoilVWQTNHLIDWAIAGLIVIGGLFYFFGPVALRTDDVIAIGLVILVLIGTRLGLRRYRE*
Ga0079221_1018164223300006804Agricultural SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPVELRTDDLVAISSVILALIGCRIGLRRYRG*
Ga0079221_1020092823300006804Agricultural SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPVALRTDDVIAIGSVILVLIGCRIGLRRYRE*
Ga0079219_1146332113300006954Agricultural SoilLAPVWQTNHLIDWAIAGLIVIGGLFYFFGPVALRTDDVIAIGLVILVLIGTRLGLRRYRE
Ga0126374_1003308213300009792Tropical Forest SoilMRQTYHMIDWAIAGLIVIGGLFYFFGPLALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126374_1007742023300009792Tropical Forest SoilMMTVRQASHLIDWVIVGLIVIGGLLYFLGPASLRTDEVIVIGLITLALIGFQIGLRRSQ*
Ga0126374_1060498513300009792Tropical Forest SoilMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAAGLVILALIGFRIGLRRYRE
Ga0126384_1118456523300010046Tropical Forest SoilMPLMTVEQTSHLIDLAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIVFRIGLRRYRE*
Ga0126384_1173404023300010046Tropical Forest SoilMRQTYHLIDWAIAGLIVIGGLLYFFGPLALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126382_1030460523300010047Tropical Forest SoilMTVEQTSHLIDLTIAGLIVIGGLFYFIGPVALRTDDVIAVGLVISALIGFRIGLRRYRE*
Ga0126373_1006513123300010048Tropical Forest SoilMPMMSVEQTGHLTDWAIAGVIVVGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126370_1003720123300010358Tropical Forest SoilMPMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126370_1267332523300010358Tropical Forest SoilMRQTYHLIDWAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRLGLRRYRE*
Ga0126372_1030745533300010360Tropical Forest SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPVALRTDDLIAIGSVILALIGCRIGLHRYRR*
Ga0126378_1018238033300010361Tropical Forest SoilMPMMSVEQTGHLIDWAIPGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126378_1208419323300010361Tropical Forest SoilMTTGRRASYLIDWVIVSLIVVGGLLYFFAPASLRTDEVIVIGLIVLALIGFQIGLRRSQ*
Ga0126379_1006246113300010366Tropical Forest SoilMPMMSVEQTGHLTDWAIAGVIVIGGLFYFFGTVALRTDDVIAVGLVILALIGFRIGLRRYRE*
Ga0126381_10176448813300010376Tropical Forest SoilMMSVSQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ*
Ga0126383_1104111713300010398Tropical Forest SoilMPLMTVEQTSHLIDLAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIVFRIGL
Ga0126383_1185216323300010398Tropical Forest SoilMRHTYHLIDWAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRLGLRRYRE*
Ga0132258_1118826523300015371Arabidopsis RhizosphereMSVEQTSHLIDWAIVGLIVIGGLFYFFGPVALRTDDIVAIGSVILALIGCRIGLRRYRE*
Ga0182036_1113507523300016270SoilLPQQELIGRAIPMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSR
Ga0182041_1072293233300016294SoilMMTVRQASHLVDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0182041_1164832113300016294SoilASDLIDWVIVGLIVFGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGLRRSH
Ga0182033_1128931113300016319SoilMMTVRQASHLIDGVIVGVIVIGGLLYFFGPTSLRTDEVIVIGLIILALIGFQIGLHRSQ
Ga0182033_1140313913300016319SoilMMTVRQVIVGVIVIGGVLYFFGPTSLRTDEVIVIGLIILALIGFQIGLHRSQ
Ga0182035_1145097813300016341SoilMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0182032_1178196723300016357SoilMMTVRQASHLIDWLIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0182034_1041853523300016371SoilLAPVTQTSQLVDWAIAGLIVGGLFYFFGPVALRTDDVIAAGRAILALISFRVGLRRYRE
Ga0182034_1054240123300016371SoilMSVEQTGHLIDWAIAGVIVIGGLLYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0182034_1164412323300016371SoilSCSWNGCRLPQQELIGRAIPMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSR
Ga0182040_1043786223300016387SoilVTQTSQLVDWVIAGLIVIGGLFYFFGPVALRTDDVIAAGLATLALIGFRVGLRRYRE
Ga0182040_1072411623300016387SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRR
Ga0182040_1081142413300016387SoilVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0182040_1192518813300016387SoilASYLIDWVIVGLIVIGGLQYFFGPASLRTDEVIAVGLIILALIGVQIGLRRSQ
Ga0182037_1015139643300016404SoilMMTVRQASYLIDWVIVGLIVIGGLQYFFGPASLRTDEVIAVGLIILALIGFQIGL
Ga0182037_1063482823300016404SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGRRRSQ
Ga0182037_1112757513300016404SoilMMTVRQASYLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSV
Ga0182037_1182959413300016404SoilQVAGVTPMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0182039_1130404423300016422SoilMMTVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQ
Ga0182039_1221662323300016422SoilCSWNGCRLPQQELIGRAIPMMIVRQASYLIDWVIVGLIVIGSLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSR
Ga0187822_1026613923300017994Freshwater SedimentMMTVRQARYLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGLRRSQ
Ga0193751_100503473300019888SoilVRQTSHLIDWAIAGLIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRLGLRRYGE
Ga0126371_1009761243300021560Tropical Forest SoilMPMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0126371_1207104923300021560Tropical Forest SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPMALRTDDVIAVGLVILVLIGIRLGLRRYR
Ga0126371_1251988623300021560Tropical Forest SoilMMTVRQASHLIDWVIVGLIVVGGLLYFFGPVSLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0126371_1328360023300021560Tropical Forest SoilMTAREASQLVDWVVVALIVIGGLFYFFGPRSLRTDEVVVVGLMVLALIGFQIGLRRSQ
Ga0126371_1377846113300021560Tropical Forest SoilMMTVRQASHLIDWVIVGLIVIGGLLYFLGPALLRTDEVIVIGLIIFALIGFQIGLRRSQ
Ga0209799_113991613300027654Tropical Forest SoilMRQTYHLIDWAIAGLIVIGGLFYFFGPLALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0207826_105129623300027680Tropical Forest SoilMTVRQASHLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGL
Ga0207826_110596713300027680Tropical Forest SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVIGLIILALIGFQIGLRRSQ
Ga0209178_114700623300027725Agricultural SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPVELRTDDLVAISSVILALIGCRIGLRRYRG
Ga0209178_133890113300027725Agricultural SoilMSVEQTGHLIDWAIVGLIVIGGLFYFFGPVALRTDDVIAIGSVILVLIGCRIGLRRYRE
Ga0318534_1002412733300031544SoilMPMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRSDDVIAVGLVILALIGFRIGLRRYRE
Ga0318534_1059289913300031544SoilMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSR
Ga0318538_1034392913300031546SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0318528_1004045923300031561SoilMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRSDDVIAVGLVILALIGFRIGLRRYRE
Ga0318528_1016843113300031561SoilMMTVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSP
Ga0310915_1079962113300031573SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0318572_1019435913300031681SoilLPQQELIGRAIPMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSPKPPAR
Ga0306918_1105730623300031744SoilMMTVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSPKPPAR
Ga0318546_1057362523300031771SoilMMTVRQASYLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0318566_1045149323300031779SoilMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQ
Ga0310917_1018018613300031833SoilASHLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0310917_1029405233300031833SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIAIGLIILALIGFQIGLRRSQ
Ga0318511_1007189223300031845SoilMPIMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRSDDVIAVGLVILALIGFRIGLRRYRE
Ga0306919_1001604053300031879SoilMMTVRQASYLIDWVIVGLIVIGGLQYFFGPASLRTDEVIAVGLIILALIGFQIGLRRSQ
Ga0306925_1059847123300031890SoilMMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIAVGLIILALIGFQIGLRRSQ
Ga0306925_1081831623300031890SoilMMTVRQASYLIDWVIVGLIVIGGLLYFLGPASLRTDEVIVIGLIILALIGFQIGLRRSQ
Ga0306925_1142044013300031890SoilMMTVRQASHLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVIGLIILGLIGFQIGLRRSQ
Ga0318520_1056880023300031897SoilMMTVRQASHLIDWVIVGVIVIGGLLYFFGPTSLRTDEVIVIGLIILALIGFQIGLHRSQ
Ga0306921_1010692613300031912SoilTGHLTDWAIAGVIVIGGLFYFFGPVALRSDDVIAVGLVILALIGFRIGLRRYRE
Ga0306921_1260561523300031912SoilMTVRQASQLLDWAVVALIVIGGLFYFFGPRSLRTDEVIIIGLMILALMGFQIGLRRSQ
Ga0310916_1035990233300031942SoilMMTVRQASYLIDWVIVGLIVIGGLQYFFGPASLRTDEVIAVGLIILALIGFQ
Ga0310913_1129073613300031945SoilMMTVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSPKPP
Ga0310910_1158141713300031946SoilMMTVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIG
Ga0306926_1064405513300031954SoilMTVRQASHLIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0306926_1119176523300031954SoilMMIVRQASYLIDWVIVGLIVIGSLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSR
Ga0306926_1169195423300031954SoilMMTVRQVIVGVIVIGGLLYFFGPTSLRTDEVIVIGLIILALIGFQIGLHRSQ
Ga0318531_1007083363300031981SoilMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSRGMQRNQ
Ga0318569_1000981123300032010SoilMPIMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYRE
Ga0310911_1074738813300032035SoilIDWVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGFQIGLRRSQ
Ga0318558_1054351323300032044SoilMMIVRQASYLIDWVIVGLIVIGGLFYFFGPRSLRTDEVIVVGLMILALIGFQIGLRRSPKPPAR
Ga0318553_1005495113300032068SoilPIMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFRIGLRRYR
Ga0318525_1039815823300032089SoilMMSVEQTGHLTDWAIAGVIVIGGLFYFFGPVALRTDDVIAVGLVILALIGFR
Ga0307472_10026675433300032205Hardwood Forest SoilMRQTNHLIDWAIAGLIVIGGLFYFFGPVVLRTDDVIAVGLVILVLIGIRLGQCRYRE
Ga0306920_10021339953300032261SoilMMSVRQASHLIDGVIAGLIVIGGLLYFFGPASLRTDEVIVVGLIILTLIGFQIGLRRSQ
Ga0306920_10204485023300032261SoilMMTVRQASYLIDWVIVGLIVIGGLLYFFGPASLRTDEVIVVGLIILALIGF
Ga0306920_10207489613300032261SoilVTQTSQLVDWAIAGLIVGGLFYFFGPVALRTDDVIAAGRAILALISFRVGLRRYRE
Ga0310914_1043272723300033289SoilMMTVRQVSHLIDWVIVGVIVIGGLLYFFGPTSLRTDEVIVIGLIILALIGFQIGLHRSQ


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