Metagenome Family F088685

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088685
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	52 residues
Representative Sequence	MKTLILAAIRCSLMFTAVTSLFCVQPAQAYTVTLEQIGSNVVATGSG
Number of Associated Samples	81
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.17 %
% of genes near scaffold ends (potentially truncated)	94.50 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.073 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (20.183 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.972 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 58.67% β-sheet: 0.00% Coil/Unstructured: 41.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00578	AhpC-TSA	3.67
PF00027	cNMP_binding	1.83
PF13432	TPR_16	1.83
PF00497	SBP_bac_3	0.92
PF13561	adh_short_C2	0.92
PF13181	TPR_8	0.92
PF04185	Phosphoesterase	0.92
PF13474	SnoaL_3	0.92
PF00211	Guanylate_cyc	0.92
PF13415	Kelch_3	0.92
PF08332	CaMKII_AD	0.92
PF00144	Beta-lactamase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4875	Protein kinase association domain CaMKII_AD, NTF2-like superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.07 %
Unclassified	root	N/A	11.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.07 %
Unclassified	root	N/A	11.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.07 %
Unclassified	root	N/A	11.93 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	58.72 %
Unclassified	root	N/A	11.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.67 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	58.72 %
Unclassified	root	N/A	11.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	44.95 %
Unclassified	root	N/A	11.93 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.95 %
Unclassified	root	N/A	11.93 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.95 %
Unclassified	root	N/A	11.93 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	1.83 %
Leptospirillum	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.95 %
Unclassified	root	N/A	11.93 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %
Leptospirillum sp. Group III	species group	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.95 %
Unclassified	root	N/A	11.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	1.83 %
Leptospirillum ferriphilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	1.83 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	44.95 %
Unclassified	root	N/A	11.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1.83 %
Leptospirillum ferriphilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	1.83 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01DLL0T	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
2170459014\|G1P06HT01BV50L	Not Available	658	Open in IMG/M
2170459024\|GZTSFBX01E1U05	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1004448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	2598	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1006366	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300000890\|JGI11643J12802_11848005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	866	Open in IMG/M
3300000955\|JGI1027J12803_103511114	Not Available	588	Open in IMG/M
3300000955\|JGI1027J12803_106359216	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300000955\|JGI1027J12803_109281046	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300004114\|Ga0062593_101977338	Not Available	647	Open in IMG/M
3300004157\|Ga0062590_100079499	Not Available	1980	Open in IMG/M
3300004480\|Ga0062592_100471030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1027	Open in IMG/M
3300004643\|Ga0062591_100892159	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300005175\|Ga0066673_10346329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	867	Open in IMG/M
3300005175\|Ga0066673_10705128	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	581	Open in IMG/M
3300005289\|Ga0065704_10477425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300005294\|Ga0065705_10007090	All Organisms → cellular organisms → Bacteria	3829	Open in IMG/M
3300005294\|Ga0065705_10022996	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300005294\|Ga0065705_10051530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300005294\|Ga0065705_10134502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2326	Open in IMG/M
3300005294\|Ga0065705_10766128	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300005332\|Ga0066388_101315286	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300005354\|Ga0070675_100205704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1710	Open in IMG/M
3300005366\|Ga0070659_101513752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300005540\|Ga0066697_10802509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300005560\|Ga0066670_10389915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	852	Open in IMG/M
3300005576\|Ga0066708_10604192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	702	Open in IMG/M
3300005764\|Ga0066903_101028243	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300005764\|Ga0066903_102954921	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005764\|Ga0066903_103316250	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005764\|Ga0066903_104596800	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	735	Open in IMG/M
3300005764\|Ga0066903_108827545	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005764\|Ga0066903_109061776	Not Available	503	Open in IMG/M
3300006032\|Ga0066696_10885269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300006046\|Ga0066652_100554430	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300006046\|Ga0066652_101898460	Not Available	534	Open in IMG/M
3300006755\|Ga0079222_11454706	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300006797\|Ga0066659_11507150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300006844\|Ga0075428_101835573	Not Available	631	Open in IMG/M
3300006854\|Ga0075425_101647350	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300006871\|Ga0075434_102006675	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	584	Open in IMG/M
3300006904\|Ga0075424_101514028	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300006904\|Ga0075424_102018302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	608	Open in IMG/M
3300009100\|Ga0075418_10299645	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1714	Open in IMG/M
3300009100\|Ga0075418_10929356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300009147\|Ga0114129_11185784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	952	Open in IMG/M
3300009162\|Ga0075423_10527116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1243	Open in IMG/M
3300009792\|Ga0126374_11131105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300009792\|Ga0126374_11704044	Not Available	524	Open in IMG/M
3300010046\|Ga0126384_10505616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1042	Open in IMG/M
3300010046\|Ga0126384_11036825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300010047\|Ga0126382_12115391	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300010047\|Ga0126382_12461931	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010048\|Ga0126373_11132878	All Organisms → cellular organisms → Bacteria → Acidobacteria	848	Open in IMG/M
3300010322\|Ga0134084_10177071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300010325\|Ga0134064_10055215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1225	Open in IMG/M
3300010335\|Ga0134063_10750135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300010359\|Ga0126376_12810011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300012198\|Ga0137364_10019791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4110	Open in IMG/M
3300012198\|Ga0137364_10535900	Not Available	881	Open in IMG/M
3300012200\|Ga0137382_10272548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1176	Open in IMG/M
3300012208\|Ga0137376_11121635	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300012285\|Ga0137370_10019782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3363	Open in IMG/M
3300012285\|Ga0137370_10513015	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012902\|Ga0157291_10067784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300012908\|Ga0157286_10040299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1148	Open in IMG/M
3300012986\|Ga0164304_10317122	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075	Open in IMG/M
3300013096\|Ga0157307_1104302	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300015077\|Ga0173483_10029506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1989	Open in IMG/M
3300015077\|Ga0173483_10294161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	792	Open in IMG/M
3300015201\|Ga0173478_10709404	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300015371\|Ga0132258_11150017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1962	Open in IMG/M
3300015374\|Ga0132255_100455149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1874	Open in IMG/M
3300015374\|Ga0132255_102045731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	872	Open in IMG/M
3300015374\|Ga0132255_103574948	Not Available	661	Open in IMG/M
3300016270\|Ga0182036_11880375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300016294\|Ga0182041_10256484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1426	Open in IMG/M
3300016341\|Ga0182035_10851626	Not Available	802	Open in IMG/M
3300016357\|Ga0182032_11902452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300016371\|Ga0182034_11045009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	707	Open in IMG/M
3300016371\|Ga0182034_11794657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540	Open in IMG/M
3300016404\|Ga0182037_10052451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2732	Open in IMG/M
3300016422\|Ga0182039_10270634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1394	Open in IMG/M
3300016445\|Ga0182038_10919469	Not Available	772	Open in IMG/M
3300016445\|Ga0182038_11856265	Not Available	544	Open in IMG/M
3300019361\|Ga0173482_10794876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300021560\|Ga0126371_12542918	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300025926\|Ga0207659_11244748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639	Open in IMG/M
3300025930\|Ga0207701_10162072	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300026316\|Ga0209155_1133070	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300026316\|Ga0209155_1209498	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300026523\|Ga0209808_1190364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300026792\|Ga0207499_103250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300026867\|Ga0207475_1000615	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1606	Open in IMG/M
3300027874\|Ga0209465_10178020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1059	Open in IMG/M
3300031231\|Ga0170824_108272006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300031716\|Ga0310813_10164593	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1795	Open in IMG/M
3300031719\|Ga0306917_11054664	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031744\|Ga0306918_11542384	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031897\|Ga0318520_11013814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300031912\|Ga0306921_10749060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1119	Open in IMG/M
3300031912\|Ga0306921_11366407	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300031912\|Ga0306921_12472465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300031942\|Ga0310916_10344489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1266	Open in IMG/M
3300031946\|Ga0310910_10775795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	756	Open in IMG/M
3300031947\|Ga0310909_11636111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	510	Open in IMG/M
3300031954\|Ga0306926_11521044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300032076\|Ga0306924_10671038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1167	Open in IMG/M
3300033289\|Ga0310914_10528227	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.49%
Host-Associated	Host-Associated	15.60%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Plants	Host-Associated → Plants	15.60%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.59%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.48%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026792	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-12 (SPAdes)	Environmental	Open in IMG/M
3300026867	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-12 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_08714940	2170459005	Grass Soil	MKILILAAVRCSLIFTAVTASLFSVRPAEAYTVTLQQMGANVVANGSGAINLTGL
2PV_01388390	2170459014	Switchgrass, Maize And Mischanthus Litter	MKTLILAAIRCSLMFLVTGSLFSVQPAQAYTVTLQQTGV
FD1_01469940	2170459024	Grass Soil	MKTLTLAAIRCSLMFTAVTASLFSVQPAQAYTVTLEQMGADVVANGSGAINLTGLYFF
AP72_2010_repI_A01DRAFT_10044481	3300000579	Forest Soil	MKTLMLPAIRCSMMFTAVAALSIQPAQAYTVTLEEVGSNVVATG
AP72_2010_repI_A10DRAFT_10063661	3300000651	Forest Soil	MKTLMLPAIRCSMMFTAVAALSIQPAQAYTVTLEEVGSNVVATGTGAINLTGLSFVGVAVRLSF
JGI11643J12802_118480051	3300000890	Soil	MKTLILTAIRCSLMFTAVAASLFFVRPAQAYTVTLEQVGSNVVAN
JGI1027J12803_1035111141	3300000955	Soil	MKILILAAIRCSLMVTAVTGSFVCVQPAQAYSVTLQQIGSKIVVNGIGPINLTGLTSIGPGSAGPGDQSK*
JGI1027J12803_1063592163	3300000955	Soil	TLTLAAIRCSVMFTAVAVTSLVCVQPAQAYTVTLQQVGS
JGI1027J12803_1092810461	3300000955	Soil	MKTPILAAIRGSLMFIAVTASLFCDRAAEAYTVTLEQMGSNVV
Ga0062593_1019773381	3300004114	Soil	MKTLILGAIRCSLMFLVTASLFSVRPAQADYIVTLQQVGPNVVATGSGAFDLT
Ga0062590_1000794991	3300004157	Soil	MKILILAAVRCSLIFTAVTASLFSVRSAEAYTVTLQQMGANVVANGSGAI
Ga0062592_1004710301	3300004480	Soil	MKTLTLAAIRCSLMFTVTASLFSIRPAQANYIVTLQQVGPNVV
Ga0062591_1008921591	3300004643	Soil	MKTPILAAIRCSLMFTAVTASLFCVRPAEAYTVTLQQMGANVVANG
Ga0066673_103463292	3300005175	Soil	MKTLILAAIRCSLMFTAVTAPLFCVRTAEAYTVRLQQMGANVVANGSG
Ga0066673_107051281	3300005175	Soil	MKTLILAAIRCSLMFLVTASLLSVQPAHAYSVTLEQVGSNVVATGSGPINLTGLSFAFSGGSPGNEIFGSFGEIIVGGSRPPTTPP
Ga0065704_104774251	3300005289	Switchgrass Rhizosphere	MKTLILAAIRCSLMFTAVTASLFSIRAAEAYTVTLQQMGANVVANGSGAINLTGLSFLASGTQGGAIL
Ga0065705_100070906	3300005294	Switchgrass Rhizosphere	MKMLILAAIRCSLMFTAVTASLFSTRPAQANYIVTLQQVGPNVVATGSGAFDLT
Ga0065705_100229961	3300005294	Switchgrass Rhizosphere	MKTLTFAAIRCSLVFTAVTASLFSVQPAQAGYIVTLQEVG
Ga0065705_100515301	3300005294	Switchgrass Rhizosphere	MKTLXLAAIRCSLMFTAVTASLFSVRPAQAGYIVTLQEVGPNVVASGSGAIDL
Ga0065705_101345021	3300005294	Switchgrass Rhizosphere	MKTLILAAIRCSLMFTAVTSLFCVQPAQAYTVTLEQIGSNVVATGSG
Ga0065705_107661281	3300005294	Switchgrass Rhizosphere	MKTLTLAAIRCSLMFTAVTSLFCVQPAQAYTVTLEQIGSNVVANG
Ga0066388_1013152861	3300005332	Tropical Forest Soil	MKTLTLAAIRCSLVFTVTAALSSVRPAEAYTVTLQQMGSNVVANGSGAINL
Ga0070675_1002057043	3300005354	Miscanthus Rhizosphere	MKTLTLAAIRCSLMFLVTGSLFSVQPVQAFTITMEQVGSNVVANGSGAINL
Ga0070659_1015137522	3300005366	Corn Rhizosphere	MKLLILAAIRCSLMFTAVTASLFSVQPAQGFTITLKQVGSNVVVTGSGAINLTGL
Ga0066697_108025091	3300005540	Soil	MKTLILAAIRCSLMFTAVAAGSFVHSAQAYLVTLEQVGSNVVATGSGPLDLTGLTFANSF
Ga0066670_103899152	3300005560	Soil	MKPLMRAVIRCSLMLLVTAPLFSVRPAQAYTVTLEQVGSNVVATGSGLINLTGLTFSDV
Ga0066708_106041921	3300005576	Soil	MRTLILAAIRCSLMFTAVTASLFCVRPAEAYTVTLEQMGSNVVANGSGPINLTGLTFLMR
Ga0066903_1010282431	3300005764	Tropical Forest Soil	MKTLIPAVIRWPLMFIAVTASLFCDRPAEAYTVTLAQMGSNVVATGSGA
Ga0066903_1029549211	3300005764	Tropical Forest Soil	MKTLILAAVRCSLIFTAVTGSLVCVQPAQAYTVTLEQVGKRLAYEQ*
Ga0066903_1033162501	3300005764	Tropical Forest Soil	MKTLILAAIRSSLMFIAVTGSLVSVQPAQGFTITLKQVGS
Ga0066903_1045968001	3300005764	Tropical Forest Soil	MKALIPAAIRCSLMFTAITGSLVCLQPAQAYTVVLQQVGANVVATGSGAIDLTGLNFGGTLTNGQALIEAY
Ga0066903_1088275451	3300005764	Tropical Forest Soil	MKTLILAAIRGSLMFTAITGSLVCVQPAQAYTVTLKEVGPNVVANGSGAINLTG
Ga0066903_1090617761	3300005764	Tropical Forest Soil	MKTHILAAIRRSLMFTAVTGSLVCVQPAEAYTVTLQQVGSNV
Ga0066696_108852692	3300006032	Soil	MKTLILAAIRCSLMFTAVTAPLFCVRTAEAYTVRLQQMGANVVANGSGPINLTGLTFQGSVSTNGVGVLPLFGIIFTGPT
Ga0066652_1005544301	3300006046	Soil	APNLEMTMKTLIVAAIRCSLMFTVTASLFSVQPTQAYTVRLLQMGSNVVANGSGAINLTGLIFQGTSSVGAGVFASLG*
Ga0066652_1018984601	3300006046	Soil	MKTLILAAIRCSLMFTAVTASLFSVWTAEAYTVRLQQMGANVVANGSGP
Ga0079222_114547062	3300006755	Agricultural Soil	MKTLILAAIRCSLVFIPVTTSIFCVRPAQAYTVTLRQVGANVVATGSGAINLTGLSSAGFVN
Ga0066659_115071502	3300006797	Soil	MKTLILAAIRCSLMFTAVTASLFCVRPAEAYTVTLEQMGSNVVA
Ga0075428_1018355731	3300006844	Populus Rhizosphere	MKTLILAAIRCSLMFAAVTASLFSVQPVQAYTVTLEQMGADVVANGSGAINLTGL
Ga0075425_1016473501	3300006854	Populus Rhizosphere	MKTLILAAIRCSLMFLVTGSLFSVQPAQAFTITLEQVGANVEGTGSGAINLTGLTFDGSGSGGA
Ga0075434_1020066751	3300006871	Populus Rhizosphere	MKTLILAAIRCSLMFTAVAALSVQPAQAYMVTLDQVGSNVVATGSGAINLTGLTFVKSMGLVVFSRVDAA
Ga0075424_1015140281	3300006904	Populus Rhizosphere	MKKLIPPAIRCSFRFTVTASLFSVQLAQAYTITLQEIGSDV
Ga0075424_1020183021	3300006904	Populus Rhizosphere	MKTLILAAIRCSLMFLVTGSLFSVQPVQAFTITMEQVGSNVVANGSGAINLTGLTFDGSGSGGAADVFASSGGISIGAT
Ga0075418_102996451	3300009100	Populus Rhizosphere	MKTLILAAIRCSLMFAAVTASLFSVQPVQAYTVTLKQMGSNVVATGSGAI
Ga0075418_109293561	3300009100	Populus Rhizosphere	MKTLILAAIRCLLLFTAVTASVFCVQPAQGFTMTLQQVG
Ga0114129_111857841	3300009147	Populus Rhizosphere	MKTLILTAIRCSLMFTAVTASLFSVRPAQAYTVTLEQMGSNVVANGSGAINLTGLGL
Ga0075423_105271163	3300009162	Populus Rhizosphere	MKVIILAAIHCSLMFTAFTALLCSVRSAQAYTVTLQHVGSDVVATGGGAIDLTGLTANGF
Ga0126374_111311051	3300009792	Tropical Forest Soil	MKVLILAAIRCSLIFSAVAASPVCVQPAEAYTVTLRQMGAN
Ga0126374_117040441	3300009792	Tropical Forest Soil	MKTLILAAIRCSLMFTAVIGSFFSIRATQANYIVTLQPVGPNVIATGSGAFDLT
Ga0126384_105056161	3300010046	Tropical Forest Soil	MKTLILAAIRCSLMFTAVTGSLVSVQPAQAYSVTLKEVGSNVVANGSGPINLTGLN
Ga0126384_110368251	3300010046	Tropical Forest Soil	MKTLIPAAIRCSLMFTAVAGSLVCVQPAQAYTVTLQQMGSN
Ga0126382_121153911	3300010047	Tropical Forest Soil	MKTLILAAIRCSLILAAVTALSVRPAQAYMVTFEQDGANVVATGSGALNLT
Ga0126382_124619311	3300010047	Tropical Forest Soil	MKTLILAAIRCSLMFTAVITSFFSIRAAQANYIVTLQQVGPDVIATGS
Ga0126373_111328782	3300010048	Tropical Forest Soil	MKALIPAAIRCSLMFTAITGSLVCLQPAQAYTVVLQQVGANVVATGSGAIDLTGLNFG
Ga0134084_101770712	3300010322	Grasslands Soil	MKKLIPAAIRCSLMFIAVTASLFCVRPAEAYTITLQQMGSNVVATGSGAINLSGLTFGNS
Ga0134064_100552151	3300010325	Grasslands Soil	MKTLILAAIRCSLMFTAVTASLFSIRPAQAYTVTLERVGFDTVVATGSGALDLTGLTLQDDNAFGGPAIN
Ga0134063_107501351	3300010335	Grasslands Soil	MRTLILAAIRCSLMFTAVTASLFSIRPAQANYIVTLQQVGPNVVATGSGA
Ga0126376_128100111	3300010359	Tropical Forest Soil	MKTLMLAAIRCSLMFSAVAGSLFCVRPAQAYTVTLEQIGANVVATGSGAIDLTGLTFFGSGVGLTPGIFA
Ga0137364_100197911	3300012198	Vadose Zone Soil	MKTLILAAVRCSLIFTAVTASLFSVRPAEAYTVTLQQ
Ga0137364_105359001	3300012198	Vadose Zone Soil	MKTLILAAIRCSLIFTAVTGSLFSVQPAQAYTVTLMQVGSTVVATGSGPIDLTGLTLLETGSSTY
Ga0137382_102725481	3300012200	Vadose Zone Soil	MKTLTLAAIRCSLMFTAVTASLFSVQLTQAYSVTLA
Ga0137376_111216351	3300012208	Vadose Zone Soil	MKTLILAAIRCSLMFTAVTAPLFCVRTAEAYTVRLQQMGANVVANGSGPINLTGLA
Ga0137370_100197823	3300012285	Vadose Zone Soil	MKTFILAAIRCSLMFTAVTASVFCVQPAQAYSVTLEQVGANVVANG
Ga0137370_105130151	3300012285	Vadose Zone Soil	MKTLMLAAIRCSLMFTAVTAPLFCVRTAEAYTVRLQQ
Ga0157291_100677841	3300012902	Soil	MKTLILAAIRCSLMFTAVTASVFCVQPAQAFTMTL
Ga0157286_100402991	3300012908	Soil	MNTLITAAIRCCFMFLVTASLFFVAPAKAYTVTLQQVGTNVVATGSGAINLAGLPINPI
Ga0164304_103171221	3300012986	Soil	MKILILAAIRCSLMFTAVTASLFCVRPAEAYTVTLEQMGSNVVANRSGPINLTGLTSAGQVGVLPGLS
Ga0157307_11043022	3300013096	Soil	MKTLSLAAIRYSLMFTAVTASLFSVQPAQAYTIKFQQVGSNVVANGSG
Ga0173483_100295063	3300015077	Soil	MKTLILAAIRCSLMLLVTEPLFSVQPAQAYTVTLQKTGSNVVATGSGAINLTGL
Ga0173483_102941613	3300015077	Soil	MKTLVLAAIRCSLMFTAVAASLFSVRPVQAYTVTLEQVGSNVVST
Ga0173478_107094042	3300015201	Soil	MKTLILAAIRCLLLFTAVTASVFCVQPAQGFTMTLQQVGSNVVANGSGAFNLSGLTGAGN
Ga0132258_111500174	3300015371	Arabidopsis Rhizosphere	MKTLILAAIRYSLMFTAVTSLFCVQPAQAYTVTLEQIGSNVVANG
Ga0132255_1004551491	3300015374	Arabidopsis Rhizosphere	MKTLILAAIRCSLMFTAVTGSLVCVQPTQAYAVTLEQVG
Ga0132255_1020457313	3300015374	Arabidopsis Rhizosphere	MKTLILAAIRCSLIFTAITGSLVCVQPAQAYSVTLKEVGSNVV
Ga0132255_1035749481	3300015374	Arabidopsis Rhizosphere	MKTLIPAAIRCSLLMFTAVTASLFSVQPAQGFTITLKQVGSNVVVTGSGAINLTGLTFVSGGFVATGSMGPSI
Ga0182036_118803751	3300016270	Soil	MKTIIFAAIRCSLTFTVTASLFSVQPAQAYTITLQEIGSNVVAIGSG
Ga0182041_102564841	3300016294	Soil	MKTLILAVIRRSLMFTAVTASLFCVRPAGAYTVTLHQV
Ga0182035_108516261	3300016341	Soil	MNTLIFAAIRGSLMFTAVAALCVDPAQAYRVTLKEVGSNVVANGSGPINL
Ga0182032_119024521	3300016357	Soil	MKTLILAAIRCSLMFIVVTASLFCDRPAEAYTVTLEQMGSNVVANGSGPINLTGLTFSETNGV
Ga0182034_110450091	3300016371	Soil	MKTLILAAIRCSLMFTAVAAFSVVQPAQAFTITLGQVGANVVANGSGAIN
Ga0182034_117946571	3300016371	Soil	MKTIIFAAIRCSLTFTVTASLFSVQPAQAYTITLQEIGSNVVAIGS
Ga0182037_100524511	3300016404	Soil	MKTLILAAIRCSLMFTAVTASLFSVQPAQAYTVTLEQMGADVVANGSGAINLTGLA
Ga0182039_102706342	3300016422	Soil	MKALILAAIRCSLMFTAVTASLFSIRPAQANYIVTLKQ
Ga0182038_109194691	3300016445	Soil	MKALILAAIRCSLMFTAVTASLFSTWTAQANYIVRLQQVGPNVV
Ga0182038_118562652	3300016445	Soil	MKTLILAAIRCSLMFTAVAVTSLFFVQPAQAYRVTLKEVGSNVVANGSGPI
Ga0173482_107948761	3300019361	Soil	MKTLILAAIRCSLMFLVTGSLFSVQPAQAYTVTLQQTGSNV
Ga0126371_125429182	3300021560	Tropical Forest Soil	MKTLILAAIRCSLMFTAVTAPLFCVRPAQAYTLTLQQVGANVVANGSGGFNLTGLTFLGTFSF
Ga0207659_112447481	3300025926	Miscanthus Rhizosphere	MKTLILAAIRCSLMFTAVTASLFSIRAAEAYTVTLQQMGANVVANGSRAI
Ga0207701_101620721	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTLTLAAIRCSLMFTAVTSLFCVQPAQAYTVTLEQIG
Ga0209155_11330702	3300026316	Soil	MKTLILAAIRCSLILTAVAALFVQPAQADGYTVTLEQVGSNVVATGGGALDLTG
Ga0209155_12094981	3300026316	Soil	MKTLILAAIRCSLMFLVTASLLSVQPAHAYSVTLEQVGSNVVATGSGPINLTGLSFAFSGGSPGNEIFG
Ga0209808_11903641	3300026523	Soil	MRTLILAAIRCSLMFTAVTASLFCVRPAEAYTVTLEQMGSNVVANGSGPINLTGLTFLMQGIAGAV
Ga0207499_1032502	3300026792	Soil	MKTLILAAIRCSLMFTAVTASLFSVRPAQAGYMVTLKQSGQNVVATGSGAFDL
Ga0207475_10006151	3300026867	Soil	MKTLILAAIRCSLMFLVTGSLFSVQPAQAYTVTLQK
Ga0209465_101780201	3300027874	Tropical Forest Soil	MKTLILAAVRCSLMFTAVAGSLVCVQPAQAYTVTLQQMGANVVATGSGAINLTGLTFFSSGI
Ga0170824_1082720061	3300031231	Forest Soil	MKILILAAIRCSLMFTAVTASLFCVRPAEAYTVTLEQMGSN
Ga0310813_101645931	3300031716	Soil	MKTLVLAAIRCSLLFTAVTGSLVCVHPAQAYTVTLQQVGANVVATGSGAIDLTGLNFGTTLTN
Ga0306917_110546641	3300031719	Soil	MKTLILAAIRCSLMFTAVTASLFSVQPAQAYTVTLEQMGADVVANGSGAINLTGLASFGPGSFFIT
Ga0306918_115423841	3300031744	Soil	MKTLILAAIRCSLMFTAVTASLFSVQPAQAYTVTLEQMGADVVANGS
Ga0318520_110138141	3300031897	Soil	MKTLILAAIRCSLMFLVTALLFFAEPAQAYTVKLQ
Ga0306921_107490601	3300031912	Soil	MKTLRLTAIRRSLMFTAVTASLFCVRPAQGFTVTLEQVGSNVVATGSGEIN
Ga0306921_113664072	3300031912	Soil	MKTLTLAAIRCSLMFTAVTASLFSTWTAQANYIVRLQQVGPNVVATGSGAFDLTGLPVKA
Ga0306921_124724651	3300031912	Soil	MKTLILAAIRCSLMFLVTTAPFRPAQAYTITLKQAGSNVVANGSGPIDLTGLTFRGS
Ga0310916_103444893	3300031942	Soil	MKTIIFAAIRCSLTFTVTASLFSVQPAQAYTITLQEIG
Ga0310910_107757951	3300031946	Soil	MKALILAAIRCSLMFTAVTASLFSIRPAQANYIVTLKQMGANVVATGSGAFDLTGL
Ga0310909_116361111	3300031947	Soil	MKTIIFAAIRCSLTFTVTASLFSVQPAQAYTITLQEIGSNVVAIGSGRSNLTGLTLEADSDFNPG
Ga0306926_115210441	3300031954	Soil	MKTLILAAIRCSLMFLVTTAPFRPAQAYTITLKQAGSNVVANGSGPIDLTGLT
Ga0306924_106710381	3300032076	Soil	MKTLRLTAIRRSLMFTAVTASPFCVRPAEAYTVTLKQMGSNVVATGSGAINLTGLT
Ga0310914_105282272	3300033289	Soil	MQTLIFAAIRCSLMFTAVTASLFCVRPAGAYTVTLHQVGSNVVATGSGAINLTGLTFASGGFVATGSMGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088685

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences