Metagenome Family F088661

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088661
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	64 residues
Representative Sequence	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEAQKVVAELQGRV
Number of Associated Samples	81
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.07 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (37.615 % of family members)
Environment Ontology (ENVO)	Unclassified (42.202 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07681	DoxX	12.84
PF02743	dCache_1	3.67
PF03807	F420_oxidored	2.75
PF15902	Sortilin-Vps10	2.75
PF02080	TrkA_C	1.83
PF01872	RibD_C	1.83
PF12704	MacB_PCD	0.92
PF13487	HD_5	0.92
PF02687	FtsX	0.92
PF00069	Pkinase	0.92
PF02518	HATPase_c	0.92
PF13424	TPR_12	0.92
PF00990	GGDEF	0.92
PF04241	DUF423	0.92
PF01594	AI-2E_transport	0.92
PF13646	HEAT_2	0.92
PF13472	Lipase_GDSL_2	0.92
PF05193	Peptidase_M16_C	0.92
PF09957	VapB_antitoxin	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	12.84
COG4270	Uncharacterized membrane protein	Function unknown [S]	12.84
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	3.67
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.83
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.92
COG2363	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	44.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.50 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	44.95 %
Unclassified	root	N/A	4.59 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	41.28 %
Unclassified	root	N/A	4.59 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	41.28 %
Unclassified	root	N/A	4.59 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.83 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.92 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	41.28 %
Unclassified	root	N/A	4.59 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.83 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.92 %
Achromobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	41.28 %
Unclassified	root	N/A	4.59 %
Pseudomonas japonica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas japonica	1.83 %
Achromobacter insuavis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter insuavis	0.92 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002916\|JGI25389J43894_1067711	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	612	Open in IMG/M
3300005172\|Ga0066683_10010551	All Organisms → cellular organisms → Bacteria	4835	Open in IMG/M
3300005172\|Ga0066683_10189337	All Organisms → cellular organisms → Bacteria → Proteobacteria	1269	Open in IMG/M
3300005172\|Ga0066683_10862552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas japonica	521	Open in IMG/M
3300005180\|Ga0066685_10093964	All Organisms → cellular organisms → Bacteria → Proteobacteria	1995	Open in IMG/M
3300005180\|Ga0066685_10944173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas japonica	573	Open in IMG/M
3300005180\|Ga0066685_11000338	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	552	Open in IMG/M
3300005440\|Ga0070705_101236939	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300005444\|Ga0070694_100720579	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300005468\|Ga0070707_101901514	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M
3300005526\|Ga0073909_10694140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter insuavis	510	Open in IMG/M
3300005546\|Ga0070696_101338065	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	609	Open in IMG/M
3300005553\|Ga0066695_10481907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	763	Open in IMG/M
3300005555\|Ga0066692_10015567	All Organisms → cellular organisms → Bacteria	3734	Open in IMG/M
3300005558\|Ga0066698_10644510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	707	Open in IMG/M
3300005569\|Ga0066705_10168266	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300005890\|Ga0075285_1025615	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300006034\|Ga0066656_10166846	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300006034\|Ga0066656_10530258	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	766	Open in IMG/M
3300006034\|Ga0066656_10996459	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300006791\|Ga0066653_10069511	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300006797\|Ga0066659_10368851	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300006846\|Ga0075430_101759383	Not Available	508	Open in IMG/M
3300006854\|Ga0075425_101817925	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300006914\|Ga0075436_100016246	All Organisms → cellular organisms → Bacteria	5095	Open in IMG/M
3300007255\|Ga0099791_10459541	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300009012\|Ga0066710_101140591	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1206	Open in IMG/M
3300009038\|Ga0099829_10175501	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1723	Open in IMG/M
3300009089\|Ga0099828_10831644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	826	Open in IMG/M
3300009089\|Ga0099828_11676140	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300009089\|Ga0099828_11983468	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300009137\|Ga0066709_100266718	All Organisms → cellular organisms → Bacteria	2304	Open in IMG/M
3300009137\|Ga0066709_101268311	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1082	Open in IMG/M
3300010321\|Ga0134067_10483578	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	510	Open in IMG/M
3300010323\|Ga0134086_10057815	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1324	Open in IMG/M
3300010323\|Ga0134086_10127734	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	915	Open in IMG/M
3300010336\|Ga0134071_10115355	Not Available	1286	Open in IMG/M
3300011409\|Ga0137323_1000310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	14122	Open in IMG/M
3300011409\|Ga0137323_1132736	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012173\|Ga0137327_1010391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1797	Open in IMG/M
3300012200\|Ga0137382_11120310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M
3300012201\|Ga0137365_11269966	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	524	Open in IMG/M
3300012202\|Ga0137363_11342191	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300012203\|Ga0137399_11172246	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300012204\|Ga0137374_10041915	All Organisms → cellular organisms → Bacteria	4837	Open in IMG/M
3300012206\|Ga0137380_10610079	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	953	Open in IMG/M
3300012206\|Ga0137380_11401997	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300012207\|Ga0137381_10900677	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	765	Open in IMG/M
3300012208\|Ga0137376_10012203	All Organisms → cellular organisms → Bacteria	6228	Open in IMG/M
3300012210\|Ga0137378_11219036	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	668	Open in IMG/M
3300012210\|Ga0137378_11246347	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300012211\|Ga0137377_10056547	All Organisms → cellular organisms → Bacteria	3639	Open in IMG/M
3300012211\|Ga0137377_11125596	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	715	Open in IMG/M
3300012351\|Ga0137386_10728608	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300012356\|Ga0137371_10375876	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1103	Open in IMG/M
3300012356\|Ga0137371_11456408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	500	Open in IMG/M
3300012357\|Ga0137384_10657669	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	853	Open in IMG/M
3300012362\|Ga0137361_10901222	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	802	Open in IMG/M
3300012362\|Ga0137361_11587981	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	575	Open in IMG/M
3300012685\|Ga0137397_10159021	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300012918\|Ga0137396_10389061	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1033	Open in IMG/M
3300012918\|Ga0137396_10742157	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300012923\|Ga0137359_10742901	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300012923\|Ga0137359_11250150	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	630	Open in IMG/M
3300012927\|Ga0137416_10785741	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	841	Open in IMG/M
3300012972\|Ga0134077_10238497	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300014157\|Ga0134078_10045576	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300014157\|Ga0134078_10460383	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300015052\|Ga0137411_1230262	All Organisms → cellular organisms → Bacteria → Acidobacteria	1122	Open in IMG/M
3300015053\|Ga0137405_1055271	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300015053\|Ga0137405_1322221	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300015241\|Ga0137418_10199823	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300015241\|Ga0137418_10443094	All Organisms → cellular organisms → Bacteria → Acidobacteria	1051	Open in IMG/M
3300015241\|Ga0137418_10443095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300015245\|Ga0137409_10648630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	888	Open in IMG/M
3300015358\|Ga0134089_10562810	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300015359\|Ga0134085_10010530	All Organisms → cellular organisms → Bacteria	3418	Open in IMG/M
3300015359\|Ga0134085_10483685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564	Open in IMG/M
3300017659\|Ga0134083_10137463	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300018053\|Ga0184626_10058861	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300018433\|Ga0066667_10460983	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1040	Open in IMG/M
3300021073\|Ga0210378_10073056	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1344	Open in IMG/M
3300021088\|Ga0210404_10202350	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300021344\|Ga0193719_10004986	All Organisms → cellular organisms → Bacteria	5412	Open in IMG/M
3300024330\|Ga0137417_1216116	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300025992\|Ga0208775_1022521	Not Available	506	Open in IMG/M
3300026297\|Ga0209237_1130080	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1034	Open in IMG/M
3300026297\|Ga0209237_1148952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	912	Open in IMG/M
3300026298\|Ga0209236_1077260	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300026306\|Ga0209468_1035554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1726	Open in IMG/M
3300026306\|Ga0209468_1157907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300026310\|Ga0209239_1234819	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	637	Open in IMG/M
3300026313\|Ga0209761_1073750	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300026313\|Ga0209761_1087744	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1590	Open in IMG/M
3300026313\|Ga0209761_1147474	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1113	Open in IMG/M
3300026314\|Ga0209268_1071251	Not Available	1042	Open in IMG/M
3300026329\|Ga0209375_1047680	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300026342\|Ga0209057_1167765	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026537\|Ga0209157_1327923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300026551\|Ga0209648_10731143	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300026557\|Ga0179587_10072124	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2035	Open in IMG/M
3300027875\|Ga0209283_10323747	All Organisms → cellular organisms → Bacteria → Acidobacteria	1014	Open in IMG/M
3300027882\|Ga0209590_10103837	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300031720\|Ga0307469_10813242	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	858	Open in IMG/M
3300032180\|Ga0307471_102459928	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	658	Open in IMG/M
3300032180\|Ga0307471_104021651	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	519	Open in IMG/M
3300032805\|Ga0335078_11992442	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300033814\|Ga0364930_0215138	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.66%
Aquatic	Environmental → Aquatic	4.59%
Plants	Host-Associated → Plants	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.74%
Sediment	Environmental → Aquatic → Sediment	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Loam	Environmental → Terrestrial → Soil → Loam	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	32.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	37.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.18%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005890	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025992	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25389J43894_10677111	3300002916	Grasslands Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEALTAGARDATQQLTQLTQPIAEAQKVVAELQGR
Ga0066683_100105511	3300005172	Soil	MAAWKIFGKETTPEQLPAELRSILAQMQRERVAFEALTTTARESAQNLTQLTQPLTEAQKTVSELQARVKGLERL
Ga0066683_101893372	3300005172	Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALSTGARDATQHLTQLTQPIAEAQKVVAELQGRVKALERLV
Ga0066683_108625521	3300005172	Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEAQKVVAELQGRVKALERL
Ga0066685_100939643	3300005180	Soil	MAAWKLFGKDVTTEQLPAELRAILAQMQRERVAFETLANTARESAQNLTALAQPITDAQKVVTELQARVKA
Ga0066685_109441731	3300005180	Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEAQKVVAELQGRVKALE
Ga0066685_110003381	3300005180	Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLTELAQPVAE
Ga0070705_1012369392	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAWNIFGRDTTPEQLPAELRAILAEMKRERVAFEALTTAARDSGQNLTQLMQPLTEAQKVVAELQSRV
Ga0070694_1007205792	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MAAWNIFGKDTTPEQLPAELRAILAEMKRERVAFEQLANSARDASQNLAQLTQPVTEAQKVVAELQARVKSL
Ga0070707_1019015141	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTWKLFGRETTLAQLPAELRSVLAQMQRERVAFEALTTGARDATQQLTQLTQPIAEA
Ga0073909_106941401	3300005526	Surface Soil	MAWNIFGRDTTPEQLPAELRAILAEMKRERVAFEALTTAARDSGQRLSQLMQPITEAQKVVSELQARVK
Ga0070696_1013380651	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFETLTTGARDSTQQLAQLTQPIAEAQKV
Ga0066695_104819072	3300005553	Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEGLTTGARDATQQLTQLTQPIAEAQKV
Ga0066692_100155671	3300005555	Soil	MAAWRLFGHDVTTEQLPAELRSILAQMQRERVAFEALTNAARESSQNLTQLTQPITDAQKTVSELQARV
Ga0066698_106445102	3300005558	Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLTELAQPVAE
Ga0066705_101682663	3300005569	Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTQLSQPIAEAQKV
Ga0075285_10256151	3300005890	Rice Paddy Soil	MAAWKLFGHDVTAEQLPAELRSILAQMQRERVAFEALTNAARESTHNLSQLTQPIADAQKTVSEL
Ga0066656_101668461	3300006034	Soil	MAAWNIFGRETTAEQLPTELRAILAEMKRERVAFEALTNAARESGQGLSQLMQPITEAQKVVAELQSRV
Ga0066656_105302581	3300006034	Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLTELAQPVAEAQKVVAEL
Ga0066656_109964592	3300006034	Soil	MAAWKIFGKETTPEQLPAELRSILAQMQRERVAFEALTTTARESAQNLTQLTQPLTEAQKTVSELQA
Ga0066653_100695113	3300006791	Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTRLSQPIAEAQKVVAELQGRVKALER
Ga0066659_103688511	3300006797	Soil	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEALTNAARESTQNLTQLTQPISD
Ga0075430_1017593832	3300006846	Populus Rhizosphere	MAPWKLFGNDTPVEQLPAELRAILAQMQRERVAYETVTHAARESAQQLTQLAQPITEAQRTVSEFQTRVK
Ga0075425_1018179252	3300006854	Populus Rhizosphere	MAWNIFGRETTPEQLPAELRAILAEMKRERVAFEALTTAARDSGQSLSQLLQPITEAQKVVAELQSRVKS
Ga0075436_1000162466	3300006914	Populus Rhizosphere	MTWKVFGRETTLAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEA
Ga0099791_104595412	3300007255	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAYEALTTGARDSSQQLAQLTQPIAE
Ga0066710_1011405911	3300009012	Grasslands Soil	MAWKLFGHKTTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLTELAQPVAEAQKVVAELQGRVKA
Ga0099829_101755013	3300009038	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDSSQQLAQLTQPIAEAQKVVAELQGRVK
Ga0099828_108316442	3300009089	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFETLTTGARDSTQQLTQLTQLARKTQRGA*
Ga0099828_116761402	3300009089	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDSSQQLAQLTQPIAEAQKVVAELQGRVKAL
Ga0099828_119834681	3300009089	Vadose Zone Soil	MAWKVFGRETTPEQLPAELRSILAQMQRERVAFETLTAGARESGQHLTQLTQPIAEAQKVVAELQGRV
Ga0066709_1002667181	3300009137	Grasslands Soil	MAWNIFGRETTAEQLPAELRAILAEMKRDRVAFENLTNAARDSGQNLSQLLQPTTDAQKV
Ga0066709_1012683112	3300009137	Grasslands Soil	MAAWNIFGRDTTPEQLPAELRSILAEMKRERVAFEALTTAARDSVQNLSQLMQPLTEAQKVVSELQ
Ga0134067_104835782	3300010321	Grasslands Soil	MAWNIFGREMTAEQLPAELRTILAEMKRERVAFEALTNAARDSGQSLSQLMQPITDAQ
Ga0134086_100578151	3300010323	Grasslands Soil	MAWTIFGRETTAEQLPAELRAILAEMKRERVAFEALTNAARDSGQNLSTLMQPLTEAQK
Ga0134086_101277342	3300010323	Grasslands Soil	MAAWNVFGRETTPEQLPAELRAILADMKRERVAFEDLTNAARDSGQSLTQLLQPLTEAQKVVS
Ga0134071_101153551	3300010336	Grasslands Soil	MAWKLFGRETSAEQLPADLRAILAQMQRERVAFETLANTARESAQNLTALTQPITDAQKVVSDLQ
Ga0137323_100031010	3300011409	Soil	MAAWNIFGRDTTPEQLPAELRAILAEMKRERVAFEALTNSARDSGQSLSQLLQPVTEAQKVVAELQA
Ga0137323_11327361	3300011409	Soil	MAWNIFGRDTTPEQLPAELRAILAELKRERVAFEALTNSARDSGQSLSQLLQPVTEAQKVVAELQA
Ga0137327_10103911	3300012173	Soil	MAAWNIFGRDTTPEQLPAELRAILAEMKRERVAFEALTNSARDSGQSLSQLLQPVTEAQK
Ga0137382_111203101	3300012200	Vadose Zone Soil	MAAWNIFGRDTTPEQLPAELRSILAEMKRERVAFEALTTAARDSGQNLSQLMQPLTEAQKVVSELQG
Ga0137365_112699662	3300012201	Vadose Zone Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFEALTTGARHSTQQLTQLSQPIAEAQKVVAELQGRVKALERLV
Ga0137363_113421912	3300012202	Vadose Zone Soil	MTWKLFGRKTTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTQLTQPIAEAQKVVA
Ga0137399_111722462	3300012203	Vadose Zone Soil	MAAWNVFGRDTTPEQLPAELRAILAEMKRERVAFENLANAARDSGQNLSQLMTPLTEAQKVVADL
Ga0137374_100419151	3300012204	Vadose Zone Soil	MAWNIFGKDTTPEQLPAELRAILAEMKRERVAFEALTNAARDSGQNLSTLMQPLTEAQKVVSELQ
Ga0137380_106100791	3300012206	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEAQKVVAELQGRV
Ga0137380_114019971	3300012206	Vadose Zone Soil	MAAWNIFGRDTTPEQLPAELRSILAEMKRERVAFEALTTAARDSGQSLSQLMQPLTEAQKVVSELQGRVKS
Ga0137381_109006772	3300012207	Vadose Zone Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEGLTTGARDATQQLTQLTQPIAEAQKVVAELQGRVKAL
Ga0137376_100122031	3300012208	Vadose Zone Soil	MAAWNVFGRDTTPEQLPAELRAILAEMKRERVAFENLANAARDSGQNLSQLMQPVTEAQKVVAELQARVK
Ga0137378_112190362	3300012210	Vadose Zone Soil	MAAWTIFGRETTAEQLPAELRAILAEMKRERVAFEALTTAARDSGQSLSQLMQPLTEAQKVVSEL
Ga0137378_112463471	3300012210	Vadose Zone Soil	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEALTNAARESTQNLTQLTLPISEAQKTVSELQ
Ga0137377_100565471	3300012211	Vadose Zone Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEAVTTGARDATQQLTQLTQPIAEAQKVVAELQGRVKALER
Ga0137377_111255961	3300012211	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDATQQLTQLTQPIAEAQKVVAELQGRVK
Ga0137386_107286081	3300012351	Vadose Zone Soil	MAAWKIFGKDTTPEQLPAELRSILAQMQRERGTCEALTTAARDSSQNLAQLTQPITE
Ga0137371_103758762	3300012356	Vadose Zone Soil	MAWNIFGRETTPEQLPDDLRAILAEMKRERVAFEALTNAARDSGQNLSTLMQPLTEAQKVVS
Ga0137371_114564081	3300012356	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALSTGARDATQHLTQLTQPIAEAQRVVAELQGRVKALER
Ga0137384_106576691	3300012357	Vadose Zone Soil	MAAWKLFGHDVTTEQLPAELRSILAQMQRERVAFEALTNAARESAQNLTQLTQPLTDAQKTVSELQARVKS
Ga0137361_109012221	3300012362	Vadose Zone Soil	MAWKLFGHETTPARLPAELRSILAQMQRERVAFEALTTGARDASQQLTQLTQPIAEAQKVVA
Ga0137361_115879812	3300012362	Vadose Zone Soil	MAAWNIFGRDTTPEQLPAELRAILAEMKRERVACEALTNAARDSGQNLTQLLQPLPEAQKVVA
Ga0137397_101590213	3300012685	Vadose Zone Soil	MAAWKIFGKDTTPEQLPAELRSILAQMQRERVAFEALTTAARDSSQNLAQLTQPITEAQK
Ga0137396_103890612	3300012918	Vadose Zone Soil	MAWNIFGRETTAEQLPAELRAILADMKRERVAFEALTNAARDSGQNLTQLLQPLTDAQKVVSELQARVKSLER
Ga0137396_107421571	3300012918	Vadose Zone Soil	MAWKLFGRATTPAQLPAELRSILAQMQRERVAYEALTTSARDSTQRLAQLTQPIAEAQKVVAEL
Ga0137359_107429011	3300012923	Vadose Zone Soil	MAWKLFGRATTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTQLTQPIAEAQK
Ga0137359_112501502	3300012923	Vadose Zone Soil	MAAWNIFGRDTTPEQLPAELRAILAEMKRERVAFEALTNAARDSGQNLSQLMTPLTEAQK
Ga0137416_107857411	3300012927	Vadose Zone Soil	MAWNIFGRETTAEQLPAELRAILAEMKRERVAFEALTNAARDSGQSLSQLLQPITDAQKVVGE
Ga0134077_102384971	3300012972	Grasslands Soil	MAAWNVFGRDTTPEQLPAELRAILAEMKRERVAFENLANAARDSGQNLSQLMQPVTEAQKVVAELQARVKS
Ga0134078_100455763	3300014157	Grasslands Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFEALSTGARDATQHLTQLTQPIAEAQKVVAELQG
Ga0134078_104603831	3300014157	Grasslands Soil	MAWTIFGRETTAEQLPAELRAILAEMKRERVAFENLTNAARDSGQNLSQLLQPITEAQKVVAELQ
Ga0137411_12302621	3300015052	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALTTGARDSSQQLAQLTQPIAEAQKVVAELRSSRSCR
Ga0137405_10552711	3300015053	Vadose Zone Soil	MTWKLFGRKTTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTQLTQPIAEAQKVVAELQGRV
Ga0137405_13222214	3300015053	Vadose Zone Soil	MTWKLFGRETTPAQLPAELRSILAQMQRERVAFEALTTGARDSTQQLTQLTQPIAEAQKVVAELQGA*
Ga0137418_101998233	3300015241	Vadose Zone Soil	MAAWKIFGKDTTPEQLPAELRSILAQMQRERVAFEALTTAARDSSQNLAQLTQPITEAQKVV
Ga0137418_104430942	3300015241	Vadose Zone Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAYEALTTGARDSTQRLAQLTQPIAEAQKVVAELQGRVKALER
Ga0137418_104430953	3300015241	Vadose Zone Soil	MAWKLFGRATTPAQLPAELRSILAQMQRERVAYEALTTSARDSTQRLAQLTQPIAEAQKVVAELQGRVKALER
Ga0137409_106486302	3300015245	Vadose Zone Soil	MAAWKIFGKDTTPEQLPAELRSILAQMQRERVAFEALTTAARDSSQNLAQLTQPITEAQKVVGELQGR
Ga0134089_105628101	3300015358	Grasslands Soil	MAWNIFGRETTSEQLPAELRAILAEMKRERVAFEALANAARDSGQSLSQLMQPITDAQKVVSELQARVKSL
Ga0134085_100105301	3300015359	Grasslands Soil	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEALTNAARESSQNLTQLTQPISDA
Ga0134085_104836851	3300015359	Grasslands Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALSTGARDATQHLTQLTQPIAEAQKVVAE
Ga0134083_101374632	3300017659	Grasslands Soil	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEALTNVARESAQSLTQLTQPISDAQKTVGE
Ga0184626_100588613	3300018053	Groundwater Sediment	MAAWNIFGRDTTPEQLPADLRAILAEMKRERVAFEAPTNAARDPGQRPSQLLQPTTEAQKVVSDPQ
Ga0066667_104609832	3300018433	Grasslands Soil	MAWNIFGREMTAEQLPAELRTILAEMKRERVAFEALTNAARDSGQNLSQLLQPITEAQKVVS
Ga0210378_100730562	3300021073	Groundwater Sediment	MAAWNIFGRETTPEQLPAELRAILAEMKRERVAFEALTNAARDSGQNLSTLLQPLTEAQK
Ga0210404_102023501	3300021088	Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEALITGARDSSQQLAQLTQPIAEAQ
Ga0193719_100049861	3300021344	Soil	MAGWKLFGRDVSTEQLPAELRSILAQMQRERVAFEGLTNAARDSSQNLAQLTQPITEAQKVVNEL
Ga0137417_12161161	3300024330	Vadose Zone Soil	MAWKLFGRATTPAQLPAELRSILAQMQRERVAYEALTTSARDSTQRLLAQLTQPIAEAQKVV
Ga0208775_10225212	3300025992	Rice Paddy Soil	IFGRETNAEQLPADLRAILAEMKRERVAFEALANSARESGQNLAQLTQPITEAQKVIAEYQKAREEAQKK
Ga0209237_11300802	3300026297	Grasslands Soil	MAWKLFGHETTPARLPAELRSILAQMQRERVAFEALTTGARDASQQLTQLTQPIAEAQKVVAELQGR
Ga0209237_11489522	3300026297	Grasslands Soil	MAWKLFGHKTTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLTELAQPVAEAQKVVAELQGRVKALERL
Ga0209236_10772601	3300026298	Grasslands Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEAVTTGARDATQQLTQLTQPIAEAQKVVAELQGR
Ga0209688_10957691	3300026305	Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFGALTAGAHDVARHLT
Ga0209468_10355541	3300026306	Soil	MAWKLFGRETTPAQLPAELRSILAQMQRERVAFEALTSGARDSTQQLTQLS
Ga0209468_11579071	3300026306	Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEALSTGARDATQHLTQLTQPIAEAQKV
Ga0209239_12348191	3300026310	Grasslands Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEALTAGARDATQQLTQLTQPIAEAQKVVAELQGRVK
Ga0209761_10737504	3300026313	Grasslands Soil	MAAWKIFGKETTPEQLPAELRSILAQMQRERVAFEGLTTTARESAQNLTQLTQPLTEA
Ga0209761_10877442	3300026313	Grasslands Soil	MAWKLFGHATTPAPLPAELRSILAQMQRERVAFEVLTAGARDATQQLTQLTQPIAE
Ga0209761_11474742	3300026313	Grasslands Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEVLTAGARDATQQLTQLTQPIAE
Ga0209268_10712511	3300026314	Soil	MAAWKLFGKDVTTEQLPAELRAILAQMQRERVAFETLANTARESAQNLTALAQPIT
Ga0209375_10476801	3300026329	Soil	MAWTIFGRETTAEQLPAELRAILAEMKRERVAFEALTNAARDSGQNLSTLMQPLTEAQKVVSELQARVKSLERL
Ga0209057_11677651	3300026342	Soil	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEALTNAARESSQNLTQLTQPISDAQKTVSELQARV
Ga0209157_13279231	3300026537	Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAFEPLTAGAHDATQQLTQLTQPIAEA
Ga0209648_107311431	3300026551	Grasslands Soil	MAAWRLFGKDVTAEQLPAELRSILAQMQRERVAFEALTNAAREAAQNVTQLTQPIADAQKTVSELQG
Ga0179587_100721241	3300026557	Vadose Zone Soil	MAWKLFGHATTPAQLPAELRSILAQMQRERVAYEALTTGARDSSQQLAQLTQPIAEAQKVVAEL
Ga0209283_103237473	3300027875	Vadose Zone Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFEGLTTGARDSTQQLAQLTQPIAEAQKV
Ga0209590_101038371	3300027882	Vadose Zone Soil	MAAWKLFGHDVTTEQLPAELRSILAQMQRERVAFEALTNAARESAQNLTQLTQPLTDAQKTV
Ga0307469_108132422	3300031720	Hardwood Forest Soil	MAWKLFGHETTPAQLPAELRSILAQMQRERVAFETLTTGARDATQQLTQLTQPIAEAQKV
Ga0307471_1024599281	3300032180	Hardwood Forest Soil	MAWNIFGRETTPEQLPAELRAILAEMKRERVAFEALTTAARDSGQSLSQIMQPITEAQKVVAELQ
Ga0307471_1040216511	3300032180	Hardwood Forest Soil	MAWKLFGHETTPAQLPAELRSILAQLQRERVAFETLTTGARDATQRLTQLTQP
Ga0335078_119924421	3300032805	Soil	MATWKLFGKDVPTEELPAELRSVLAQMQRERAAFETLTNGAREAIQSLAQLAQPVADAQKTVV
Ga0364930_0215138_1_225	3300033814	Sediment	MAAWKLFGRDVTTEQLPAELRSILAQMQRERVAFEGLTNAARDSAQNLTQLTQPITEAQKIVSELQGRVKALERL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088661

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences