Metagenome Family F088649

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088649
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	43 residues
Representative Sequence	MSERQTAPVLELKHTAMSEEEALRFLDGHRITRGGRTMDPKAQIVG
Number of Associated Samples	92
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.30 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	93.58 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.817 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (13.761 % of family members)
Environment Ontology (ENVO)	Unclassified (27.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.97% β-sheet: 8.11% Coil/Unstructured: 68.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05544	Pro_racemase	20.18
PF02633	Creatininase	10.09
PF00496	SBP_bac_5	5.50
PF01042	Ribonuc_L-PSP	4.59
PF00296	Bac_luciferase	4.59
PF00106	adh_short	3.67
PF01546	Peptidase_M20	2.75
PF04909	Amidohydro_2	2.75
PF08402	TOBE_2	2.75
PF01425	Amidase	1.83
PF02627	CMD	1.83
PF09296	NUDIX-like	1.83
PF05685	Uma2	0.92
PF03928	HbpS-like	0.92
PF13669	Glyoxalase_4	0.92
PF03171	2OG-FeII_Oxy	0.92
PF07470	Glyco_hydro_88	0.92
PF02738	MoCoBD_1	0.92
PF09297	zf-NADH-PPase	0.92
PF00999	Na_H_Exchanger	0.92
PF13181	TPR_8	0.92
PF08659	KR	0.92
PF00528	BPD_transp_1	0.92
PF01850	PIN	0.92
PF05694	SBP56	0.92
PF00005	ABC_tran	0.92
PF01315	Ald_Xan_dh_C	0.92
PF00578	AhpC-TSA	0.92
PF00903	Glyoxalase	0.92
PF07859	Abhydrolase_3	0.92
PF06055	ExoD	0.92
PF04255	DUF433	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3938	Proline racemase/hydroxyproline epimerase	Amino acid transport and metabolism [E]	20.18
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	10.09
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	4.59
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.59
COG2816	NADH pyrophosphatase NudC, Nudix superfamily	Nucleotide transport and metabolism [F]	2.75
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.83
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.83
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.83
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.92
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.92
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.92
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.92
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.92
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.92
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.92
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.73 %
Unclassified	root	N/A	19.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.73 %
Unclassified	root	N/A	19.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.82 %
Unclassified	root	N/A	19.27 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	20.18 %
Unclassified	root	N/A	19.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	20.18 %
Unclassified	root	N/A	19.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	19.27 %
Unclassified	root	N/A	19.27 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.27 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	14.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.92 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.92 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.83 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	0.92 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
Bradyrhizobium sp. WD16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WD16	1.83 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	0.92 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725003\|GPWSG_F5G3JLY01A9U0T	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0571863	Not Available	543	Open in IMG/M
3300000559\|F14TC_100670536	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300004024\|Ga0055436_10297078	Not Available	522	Open in IMG/M
3300004052\|Ga0055490_10239247	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300004156\|Ga0062589_101314573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	699	Open in IMG/M
3300004281\|Ga0066397_10026642	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300004463\|Ga0063356_105533103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300005171\|Ga0066677_10782265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	529	Open in IMG/M
3300005174\|Ga0066680_10750265	Not Available	593	Open in IMG/M
3300005332\|Ga0066388_102169986	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1001	Open in IMG/M
3300005332\|Ga0066388_102815832	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300005332\|Ga0066388_103635335	Not Available	787	Open in IMG/M
3300005332\|Ga0066388_105398466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	648	Open in IMG/M
3300005334\|Ga0068869_101891089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	535	Open in IMG/M
3300005445\|Ga0070708_100970387	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300005555\|Ga0066692_10130989	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300005556\|Ga0066707_10093625	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300005558\|Ga0066698_10443925	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300005559\|Ga0066700_10381178	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	995	Open in IMG/M
3300005569\|Ga0066705_10610426	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005764\|Ga0066903_101632421	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300005764\|Ga0066903_101777627	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300005764\|Ga0066903_104619575	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300005764\|Ga0066903_105059814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300006791\|Ga0066653_10452535	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300006844\|Ga0075428_100769992	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1024	Open in IMG/M
3300006852\|Ga0075433_10265801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1520	Open in IMG/M
3300006854\|Ga0075425_101522001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300006903\|Ga0075426_10543905	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300007255\|Ga0099791_10053923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1804	Open in IMG/M
3300007265\|Ga0099794_10628481	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300007265\|Ga0099794_10800684	Not Available	504	Open in IMG/M
3300009100\|Ga0075418_12641157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	548	Open in IMG/M
3300009147\|Ga0114129_12714509	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300009162\|Ga0075423_11264988	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300009176\|Ga0105242_10733929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	970	Open in IMG/M
3300009792\|Ga0126374_10028134	All Organisms → cellular organisms → Bacteria	2591	Open in IMG/M
3300009792\|Ga0126374_10812740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WD16	716	Open in IMG/M
3300009837\|Ga0105058_1189536	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300010046\|Ga0126384_12151053	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300010047\|Ga0126382_11056856	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300010047\|Ga0126382_11797025	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300010301\|Ga0134070_10298886	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300010335\|Ga0134063_10260252	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300010359\|Ga0126376_11389908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WD16	726	Open in IMG/M
3300010360\|Ga0126372_12303722	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010362\|Ga0126377_11563831	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300010362\|Ga0126377_11949735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300010362\|Ga0126377_13234309	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300010362\|Ga0126377_13385738	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300010376\|Ga0126381_102443789	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300010397\|Ga0134124_10332739	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300010397\|Ga0134124_11516810	Not Available	699	Open in IMG/M
3300010398\|Ga0126383_10100190	All Organisms → cellular organisms → Bacteria	2587	Open in IMG/M
3300010403\|Ga0134123_13459602	Not Available	511	Open in IMG/M
3300012204\|Ga0137374_10327952	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300012207\|Ga0137381_11364803	Not Available	601	Open in IMG/M
3300012208\|Ga0137376_10685723	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012349\|Ga0137387_10906557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300012351\|Ga0137386_10619941	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300012354\|Ga0137366_10090075	Not Available	2329	Open in IMG/M
3300012363\|Ga0137390_10469322	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300012582\|Ga0137358_10149518	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300012902\|Ga0157291_10419748	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300012925\|Ga0137419_10101209	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1995	Open in IMG/M
3300012927\|Ga0137416_10927617	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300012971\|Ga0126369_11771484	Not Available	706	Open in IMG/M
3300013297\|Ga0157378_12656858	Not Available	553	Open in IMG/M
3300015052\|Ga0137411_1117625	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300015358\|Ga0134089_10375256	Not Available	603	Open in IMG/M
3300015358\|Ga0134089_10524890	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300015373\|Ga0132257_100870474	Not Available	1128	Open in IMG/M
3300015374\|Ga0132255_102025331	Not Available	876	Open in IMG/M
3300016294\|Ga0182041_10583798	Not Available	980	Open in IMG/M
3300016404\|Ga0182037_10526850	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300016422\|Ga0182039_10675329	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300018000\|Ga0184604_10042198	All Organisms → cellular organisms → Bacteria → Proteobacteria	1222	Open in IMG/M
3300018052\|Ga0184638_1130298	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	916	Open in IMG/M
3300018054\|Ga0184621_10275800	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	596	Open in IMG/M
3300018064\|Ga0187773_10818607	Not Available	594	Open in IMG/M
3300018078\|Ga0184612_10310777	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	806	Open in IMG/M
3300018082\|Ga0184639_10373007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300019789\|Ga0137408_1176451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2604	Open in IMG/M
3300025905\|Ga0207685_10220882	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	901	Open in IMG/M
3300025910\|Ga0207684_10725920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300025942\|Ga0207689_11577438	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300025961\|Ga0207712_11235933	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300026089\|Ga0207648_11545972	Not Available	624	Open in IMG/M
3300026089\|Ga0207648_11869457	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300026298\|Ga0209236_1031101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2848	Open in IMG/M
3300026328\|Ga0209802_1129047	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300027646\|Ga0209466_1090157	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300028589\|Ga0247818_10561929	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300028889\|Ga0247827_10839213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	612	Open in IMG/M
3300031170\|Ga0307498_10246476	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031561\|Ga0318528_10325510	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300031720\|Ga0307469_10231736	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300031720\|Ga0307469_12532063	Not Available	502	Open in IMG/M
3300031731\|Ga0307405_11805475	Not Available	544	Open in IMG/M
3300031740\|Ga0307468_100785735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	809	Open in IMG/M
3300031858\|Ga0310892_10225182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1143	Open in IMG/M
3300031897\|Ga0318520_10736143	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300032012\|Ga0310902_10133862	Not Available	1379	Open in IMG/M
3300032089\|Ga0318525_10030646	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300032180\|Ga0307471_100857975	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
3300032205\|Ga0307472_101718018	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300032211\|Ga0310896_10559419	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.49%
Host-Associated	Host-Associated	16.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.06%
Plants	Host-Associated → Plants	16.51%
Aquatic	Environmental → Aquatic	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.42%
Sediment	Environmental → Aquatic → Sediment	4.59%
Marine	Environmental → Aquatic → Marine	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.47%
Loam	Environmental → Terrestrial → Soil → Loam	13.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.59%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_02624230	2067725003	Soil	MSDKQTAPTLELAHTAMSEEDALRFLDGHRISRGARTMDPKAQIVGEFVKS
ICChiseqgaiiDRAFT_05718632	3300000033	Soil	MSDKQTAPTMELAHTAMSEEDALRFLDGHRISRGARTMDPKAQIVG
F14TC_1006705361	3300000559	Soil	MTERAATTLELVHTMMDEAEAVRFLEGQRISLGGRTMDPKAQI
Ga0055436_102970782	3300004024	Natural And Restored Wetlands	MGETAPVLELAHISMSEDEALRFLDGHRISRGGRTMNPKAQIVGE
Ga0055490_102392472	3300004052	Natural And Restored Wetlands	MSHPTLELSHTMLSEAEALRLLDGHRIRLGSRTMDPKAQIVG
Ga0062589_1013145732	3300004156	Soil	MTDRTAPPQLELAHTLMTEEEALRFLDGHRIRHGSRVMDP
Ga0066397_100266421	3300004281	Tropical Forest Soil	MSDARAHPKLEISHTAMSEEDALRFLDGHRIRLGHRTMDPKAQIVGEFVK
Ga0063356_1055331032	3300004463	Arabidopsis Thaliana Rhizosphere	MSEQGTHPKLELAHTAMSEADALRLLEGHRIRRGSRTMDPK
Ga0066677_107822651	3300005171	Soil	MSTHPALDMSHTAMSEEDALRFLEGHRIRMGSRTMDPKAQIVGEFV
Ga0066680_107502652	3300005174	Soil	MSERQTALALELKHTTMSEEEALRFLDGHRISRGGRTMDPK
Ga0066388_1021699862	3300005332	Tropical Forest Soil	MSVPKTTATLELAHTAMSGAEALRFLEGQRIRIGGRTMDPK
Ga0066388_1028158322	3300005332	Tropical Forest Soil	MSASKTTTALELAHTAMSEAEALRFLEGQRIRIGGRTMDPKAQIV
Ga0066388_1036353353	3300005332	Tropical Forest Soil	MTDPSALPKLELSHTAMSEDDALRFLEGHRIRRGSRTMDPKAQIVGEF
Ga0066388_1053984661	3300005332	Tropical Forest Soil	MSTHPPLELSHTALSEGEALRFLEGHRIRLGNRTMDPKAQI
Ga0068869_1018910891	3300005334	Miscanthus Rhizosphere	MSTHPTLELSHTAMSEEDALRLLDGHRIKMGDRTMDPKAQIVG
Ga0070708_1009703871	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKQTAPALALQHTMLSEDDAQRFLDGHRISLGGRTMDPKAQIV
Ga0066692_101309893	3300005555	Soil	MSELRTQPKLELSHTAMSEEDALRFLEGHRNRLGSRTMDPKAQIVG
Ga0066707_100936251	3300005556	Soil	MSDGQAAAVTLELAHTMLSEEEALRFLDGHRITRGG
Ga0066698_104439251	3300005558	Soil	MSAHPTLDMTHTAMSEEDALRFLDGHRIRMGSRTM
Ga0066700_103811783	3300005559	Soil	MSERQTAPALELKHTAMSEEEALRFLDGHRISRGGRTMD
Ga0066705_106104263	3300005569	Soil	MSAHPALDMTHTAMSEEDALRFLEGHRIRMGSRTMDPKAQIVGE
Ga0066903_1016324212	3300005764	Tropical Forest Soil	MSEQRTAPVLELQHTAMSEAEALHFLEGHRISRGARTMDPKAQIV
Ga0066903_1017776271	3300005764	Tropical Forest Soil	MSERATHPVPQLSDTAMSEAEALRFLDDHRVRLGSRTMDPKAQIVGEF
Ga0066903_1046195751	3300005764	Tropical Forest Soil	MSTSKTTTTLELAHTAMSEAEALRFLEGQRIRIGGRTMDPKAQIV
Ga0066903_1050598142	3300005764	Tropical Forest Soil	MAERQTAPALTLQNTMMGEEEARRFLKGHRISLGGRTMDPKAQIVGEFVKSIRV
Ga0066653_104525352	3300006791	Soil	MSERQTALALELKHTAMSEEDALRFLDGHRMSRGGRTMDPEAQSVGEFV
Ga0075428_1007699921	3300006844	Populus Rhizosphere	MTHQPTLPKLELSHTLMPENDALRFLAGHRITMGSRTMDPKAQL
Ga0075433_102658011	3300006852	Populus Rhizosphere	MSTHPPLELSHTTLSEEDALRFLEGHRIRLGSRTMDPKAQIVG
Ga0075425_1015220011	3300006854	Populus Rhizosphere	MAERQTAPALTLQHTTMSEEEARRFLDGHRISLAGRTMDPKAQIVGE
Ga0075426_105439052	3300006903	Populus Rhizosphere	MSTHPALDLSHTAMSEEDALRLLDGHRIKMGDRTM
Ga0099791_100539234	3300007255	Vadose Zone Soil	MSELRTKPTFELAHTAMSEAEALRFLEGHRISLGGRTMDPKAQIVGEFVK
Ga0099794_106284811	3300007265	Vadose Zone Soil	MSDRQAAAATLELAHTMLSEEEALRFLDGHRITRGGRIM
Ga0099794_108006841	3300007265	Vadose Zone Soil	MSEATTRPTLTLEHTAMGEAEALQFLAGHRITRGGRTMDPKAQIVG
Ga0075418_126411571	3300009100	Populus Rhizosphere	MSEATTKRPATPTLELSHTLLSEADALRLLDGHRITRGERTMDPKAQIVGEF
Ga0114129_127145091	3300009147	Populus Rhizosphere	MNLTLEHAALSEADALKLLDGQRITLRGRTMDPKAQIV
Ga0075423_112649883	3300009162	Populus Rhizosphere	MSDLRTHPKLELSHTAMSEQDALRFLEGHRIRLGDR
Ga0105242_107339291	3300009176	Miscanthus Rhizosphere	MSERATHPVLELAHTALSEADALRLLDGHRIRRGSRTMDPKAQ
Ga0126374_100281343	3300009792	Tropical Forest Soil	MSTHPTLEMSHTAMSEDDALRFLEGHRIRMGSRTMDPK
Ga0126374_108127401	3300009792	Tropical Forest Soil	MSEQRTTPAFDLSHTAMSEADALGFLEGQRISRGGRTMEPKAQIVGEFVKSI
Ga0105058_11895362	3300009837	Groundwater Sand	MSEPRTQPALELSHTTMSEEDALRFLDGHRIRLGSRT
Ga0126384_121510532	3300010046	Tropical Forest Soil	MTTLELAHTLMTEPDALRFVDGQRIRRGGRVMDPK
Ga0126382_110568561	3300010047	Tropical Forest Soil	MTDATTGPTLTLEHTALSEAEALKLLDGHRVTVAGRTMDPKAQIIGEF
Ga0126382_117970251	3300010047	Tropical Forest Soil	MSDAPTHPKLELSHTAMSEEDALRFLDGHRIRLGNRTLDPKAQIVGE
Ga0126382_122226511	3300010047	Tropical Forest Soil	MSQIQHSSKLELAHTLMSEDDALSFLAGQRISRGGRTMDPK
Ga0134070_102988861	3300010301	Grasslands Soil	MSDRQAAAVTLELAHTMLSEEEALRFLDGHRITRGGRIMD
Ga0134063_102602522	3300010335	Grasslands Soil	MSDRQAAAVTLELAHTMLSEEEALRFLDGHRITRGGRIMDPKAQIVGEFVKS
Ga0126376_113899082	3300010359	Tropical Forest Soil	MSEQRTTPAFDLSHTAMSEEDALRFLDGHRIRMGSRTMDPKAQIVGEFVK
Ga0126372_123037222	3300010360	Tropical Forest Soil	MSTHPTLDLSHTALSEEDALRLLDGHRISMGTRTMDPKAQIVGEFV
Ga0126377_115638312	3300010362	Tropical Forest Soil	MSDLPKLELAHTLMSEDEALRLLAGHRISRGGRTMDPKA
Ga0126377_119497352	3300010362	Tropical Forest Soil	MSVPKTTTTLELAHTAMSEAEALRFLEGQRIRIGGRTMDPKAQIVGE
Ga0126377_132343091	3300010362	Tropical Forest Soil	LWIEEESMSTHPTLEMSHTAMSEEDALRFLDGHRIRM
Ga0126377_133857381	3300010362	Tropical Forest Soil	MSTHPTLDLSHTAMSEEDALRLLDGHRISMGTRTMDPKAQ
Ga0126381_1024437891	3300010376	Tropical Forest Soil	MSVPKTTTTLELAHTAMSEAEALRFLEGQRIRIGGRIMDPKAQIV
Ga0134124_103327391	3300010397	Terrestrial Soil	MSTHPTLDLSHTAMSEADALRFLDGHRISMGGRTMDPKAQIVGEF
Ga0134124_115168101	3300010397	Terrestrial Soil	MTDKQTAPTLELAHTLMSETDALAFLHGYRISRGARTMDPKAQIVGEFVKS
Ga0126383_101001903	3300010398	Tropical Forest Soil	LWIEEESMSTHPPLEMAHTAMSEEDALRFLEGHRIR
Ga0134123_134596022	3300010403	Terrestrial Soil	MSTHPPLELSHTALSEDEALRFLEGHRIRLGGRTM
Ga0137374_103279525	3300012204	Vadose Zone Soil	MSERQTALAMELKHTAMSEEEALRFLDGHRISRGGR
Ga0137381_113648032	3300012207	Vadose Zone Soil	MSERQTAPVLELKHTAMSEEEALRFLDGHRITRGGRTMDPKAQIVG
Ga0137376_106857231	3300012208	Vadose Zone Soil	MSTHPTLDLSHTAMSEEDALRLLDGHRIKMGDRTMDPKAQIVGEF
Ga0137387_109065573	3300012349	Vadose Zone Soil	MSERTAPVLELQHTAMSGEDALRFLEGHRISRGGRTMDPKAQIVGEF
Ga0137386_106199413	3300012351	Vadose Zone Soil	MSDRTAPVLELQHTAMSEQEALRFLEGHRISLGGRTMDP
Ga0137366_100900754	3300012354	Vadose Zone Soil	MSERQTVPVLELKHTAMSEEEALRFLDGHRISRGGRTMDPKAQIVGEFVKSI
Ga0137390_104693224	3300012363	Vadose Zone Soil	MSELRTHPKLELSHTAMSEEDALRFLDGHRIRLGSRTMDPKAQIVGEFV
Ga0137358_101495183	3300012582	Vadose Zone Soil	MSAHPALDMTHTAMSEEDALRFLEGHRIRMGSRTM
Ga0157291_104197482	3300012902	Soil	MSDKQTAPTLELAHTAMSEEDALRFLDGHRISRGARTMDPKAQIVGEFVKSIR
Ga0137419_101012094	3300012925	Vadose Zone Soil	MSELRTKPTFELAHTAMSEAEALRFLEGHRISLGGRTMDPKAQIV
Ga0137416_109276171	3300012927	Vadose Zone Soil	MSDRQAGAATLELAHTMLSEEEALRFLDGQRITRGGRIMDPKAQIVGEF
Ga0126369_117714841	3300012971	Tropical Forest Soil	MEDRMSEQKTAPTLELQHTMMSEEEALRFLDGHRIS
Ga0157378_126568581	3300013297	Miscanthus Rhizosphere	MTDKQTAPTLELAHTAMSEEDALRFLDGHRISRGARTMDPKAQIVGEFVK
Ga0137411_11176252	3300015052	Vadose Zone Soil	MTERSAAATLELAHTVLSEEEALRFLDGHRISRGG
Ga0134089_103752561	3300015358	Grasslands Soil	MSERQTAPVLELKHTAMSEEEALRFLDGHRISRGGRTMDPKAQIVGEFVK
Ga0134089_105248902	3300015358	Grasslands Soil	MTEQAGTTLELVHTMMDEAEALRFLEGQRISLGSRTM
Ga0132257_1008704742	3300015373	Arabidopsis Rhizosphere	MSAHPALDMTHTAMSEEAALSFLEGHRIRMGNRTMDPKAQIVG
Ga0132255_1020253311	3300015374	Arabidopsis Rhizosphere	MSDKQTAPTLKLAHTAMSEEDALRFLDGYRISRGPRTMDPKA
Ga0182041_105837981	3300016294	Soil	MSTHPTLDLSHTQMSEEEALRVLDGHRITMGGRTM
Ga0182037_105268501	3300016404	Soil	MSTHPTLDLSHTQMSEEEALRLLDGHRITVGGRTMDPKAQIVGEFVK
Ga0182039_106753291	3300016422	Soil	MSASKTTTTLELAHTAMSEAEALRFLEGQRIRIGGRTMDPKAQ
Ga0184604_100421982	3300018000	Groundwater Sediment	MTEKPTLPKLELAHSLLDEAAALAFLAGHRISLGARTMDPRRRSWASS
Ga0184638_11302981	3300018052	Groundwater Sediment	MSHGTAPAMTLEHTAMSEAEALKVLDGHRITRSGRTMDPKAQI
Ga0184621_102758002	3300018054	Groundwater Sediment	MTEKPTLPKLELAHTMLSEDAALAFLAGHRISLGGRTMDPKAQ
Ga0187773_108186071	3300018064	Tropical Peatland	MSKTAPALELAHTQMSEGEALRLLDGHRISRGGRTMDPKAQI
Ga0184612_103107771	3300018078	Groundwater Sediment	MSERGTHPALELSHTTMSEEDALRFLDGHRIRLGSRTMDPKAQIV
Ga0184639_103730072	3300018082	Groundwater Sediment	MSELRTKPTLELAHTAMSEEEALRFLKGHRISRGGRTMD
Ga0137408_11764511	3300019789	Vadose Zone Soil	MSDPSTHPALDISHTSMSEEAALRFLDGHRIRMGSRTMDPRRLRSS
Ga0207685_102208821	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTERAATTLELVHTMMDEAEAVRFLEGQRISLGGRTMDPKAQIVGE
Ga0207684_107259202	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSERMALVLELKHTAMSEEEALRFLEGHRISLGGRT
Ga0207689_115774382	3300025942	Miscanthus Rhizosphere	MSTHPTLELSHTAMSEEDALRLLDGHRIKMGDRTMDPKAQIVGEFVK
Ga0207712_112359332	3300025961	Switchgrass Rhizosphere	MSETTTGPKLTLEHTQMSEADALAFLGDQRIRRGSRTMDPKAQIVGEFV
Ga0207648_115459722	3300026089	Miscanthus Rhizosphere	MSEMPKLELAHTMLSEEDALRVLDGHRISRGGRTMDPKAQI
Ga0207648_118694571	3300026089	Miscanthus Rhizosphere	MSEQGTHPKLELAHTAMSEADALRLLEGHRIRRGSRTMYPKA
Ga0209236_10311011	3300026298	Grasslands Soil	MSDLRTHPKLELSHTEMSEPDALRFLEGHRIRLGDRTMDPKA
Ga0209802_11290473	3300026328	Soil	MSDLRTHPKLELSHTAMSEPDALRFLEGHRIRLGDRTMDPK
Ga0209466_10901572	3300027646	Tropical Forest Soil	MSDARAHPKLEISHTAMSEEDALRFLDGHRIRLGHRTMDPKAQIVGEFVKSI
Ga0247818_105619291	3300028589	Soil	MSESRTHPTLELAHTLMSEEDALRLLAGHRIRLGSRTMDPKAQ
Ga0247827_108392132	3300028889	Soil	MSERGTHPVLELSHAAMSEEDALRFLEGHRIRLGGRTMDPKAQIVG
Ga0307498_102464761	3300031170	Soil	MSTHPPLDLSHTAMSEEDALRLLDGHRITMGGRTMDPKP
Ga0318528_103255102	3300031561	Soil	MSASKTTTTLELAHTAMSEAEALRFLEGQRIRIGGR
Ga0307469_102317362	3300031720	Hardwood Forest Soil	MSEKTAPALELKHTAMSEEEALRLLEGHRISLGGRTMD
Ga0307469_125320631	3300031720	Hardwood Forest Soil	DLPKLELAHTLMSEDDALRFLEGHRFSRGGRTMDPKSQIVGEFVR
Ga0307405_118054752	3300031731	Rhizosphere	MSERGTHPALELSHTAMSEEEALRFLDGHRIRLGHRTMDPKAQIVGEFVK
Ga0307468_1007857351	3300031740	Hardwood Forest Soil	MTERAATTLELVHTMMDEAEAVRFLEGQQISLGGRTMDPKAQIV
Ga0310892_102251821	3300031858	Soil	MSERATHPVLELAHTALSEDEALRLLDGHRIRRGSRTMD
Ga0318520_107361432	3300031897	Soil	MSTHPTLDLSHTQMSEEEALRLLDGHRITMGGRTMDPKAQ
Ga0310902_101338621	3300032012	Soil	MSAHPVLDMTHTALSEEDALRLLDGHRIRMGNRTMDPKAQIVG
Ga0318525_100306463	3300032089	Soil	MSTHPILEMSHTAMSEEDALRFLEGHRIRMGSRTMDPK
Ga0307471_1008579751	3300032180	Hardwood Forest Soil	MSDERVGATLELAHTMMSETEALGFLEGQRISLGARTMDP
Ga0307472_1017180182	3300032205	Hardwood Forest Soil	MSERTAPALELKHTAMSEEEALRFLEGHRISLGGRTMDP
Ga0310896_105594192	3300032211	Soil	MSTHPTLDLSHTAMSEEAALRLLDGHRIKMGDRTMD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088649

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences