Metagenome / Metatranscriptome Family F088622

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088622
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	84 residues
Representative Sequence	MSEHWPSIPGSDTLAIPANRENHVLDVYLTDGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHPA
Number of Associated Samples	78
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.28 %
% of genes near scaffold ends (potentially truncated)	22.02 %
% of genes from short scaffolds (< 2000 bps)	84.40 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.027 % of family members)
Environment Ontology (ENVO)	Unclassified (39.450 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.046 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.75% β-sheet: 33.03% Coil/Unstructured: 64.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01865	PhoU_div	31.19
PF13451	zf-trcl	4.59
PF01384	PHO4	3.67
PF00391	PEP-utilizers	2.75
PF00246	Peptidase_M14	2.75
PF13646	HEAT_2	1.83
PF00155	Aminotran_1_2	1.83
PF01425	Amidase	1.83
PF13416	SBP_bac_8	1.83
PF07690	MFS_1	1.83
PF07992	Pyr_redox_2	0.92
PF00041	fn3	0.92
PF13620	CarboxypepD_reg	0.92
PF00005	ABC_tran	0.92
PF00296	Bac_luciferase	0.92
PF06480	FtsH_ext	0.92
PF09363	XFP_C	0.92
PF16925	TetR_C_13	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1392	Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 family	Inorganic ion transport and metabolism [P]	31.19
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	3.67
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.83
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.39 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	60.55 %
Unclassified	root	N/A	2.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	37.61 %
Unclassified	root	N/A	2.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	37.61 %
Unclassified	root	N/A	2.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004479\|Ga0062595_101938698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	566	Open in IMG/M
3300005093\|Ga0062594_102451247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300005174\|Ga0066680_10687028	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005181\|Ga0066678_10396012	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300005355\|Ga0070671_101780405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300005445\|Ga0070708_100473620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1181	Open in IMG/M
3300005467\|Ga0070706_100023513	All Organisms → cellular organisms → Bacteria	5676	Open in IMG/M
3300005467\|Ga0070706_100666397	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300005468\|Ga0070707_100077919	All Organisms → cellular organisms → Bacteria	3198	Open in IMG/M
3300005471\|Ga0070698_100655807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	991	Open in IMG/M
3300005518\|Ga0070699_100560749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1040	Open in IMG/M
3300005537\|Ga0070730_10013603	All Organisms → cellular organisms → Bacteria	6561	Open in IMG/M
3300005537\|Ga0070730_10053354	All Organisms → cellular organisms → Bacteria	2909	Open in IMG/M
3300005552\|Ga0066701_10256048	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300005559\|Ga0066700_10509058	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005575\|Ga0066702_10251714	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300005578\|Ga0068854_101120793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	702	Open in IMG/M
3300005586\|Ga0066691_10778685	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005764\|Ga0066903_100081903	All Organisms → cellular organisms → Bacteria	4221	Open in IMG/M
3300005764\|Ga0066903_105248498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	685	Open in IMG/M
3300005842\|Ga0068858_101701216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	623	Open in IMG/M
3300005993\|Ga0080027_10446777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300005994\|Ga0066789_10137989	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1038	Open in IMG/M
3300006050\|Ga0075028_100919882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300006162\|Ga0075030_100330500	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300006794\|Ga0066658_10549402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	628	Open in IMG/M
3300006796\|Ga0066665_10194649	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300006800\|Ga0066660_10236718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1418	Open in IMG/M
3300006893\|Ga0073928_10571423	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300009012\|Ga0066710_100160708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3141	Open in IMG/M
3300009089\|Ga0099828_10425740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1197	Open in IMG/M
3300009089\|Ga0099828_10787710	All Organisms → cellular organisms → Bacteria → Terrabacteria group	852	Open in IMG/M
3300009090\|Ga0099827_10665860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	899	Open in IMG/M
3300009137\|Ga0066709_100806525	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300009137\|Ga0066709_101224699	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300009147\|Ga0114129_10059123	All Organisms → cellular organisms → Bacteria	5359	Open in IMG/M
3300009400\|Ga0116854_1006635	All Organisms → cellular organisms → Bacteria → Terrabacteria group	597	Open in IMG/M
3300010038\|Ga0126315_10415272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	848	Open in IMG/M
3300010359\|Ga0126376_10297483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1401	Open in IMG/M
3300010376\|Ga0126381_102604276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	724	Open in IMG/M
3300010398\|Ga0126383_13100218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	543	Open in IMG/M
3300010399\|Ga0134127_11495244	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300011269\|Ga0137392_10814615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	771	Open in IMG/M
3300011270\|Ga0137391_10011688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7042	Open in IMG/M
3300011270\|Ga0137391_10197883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1748	Open in IMG/M
3300011270\|Ga0137391_10467815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1071	Open in IMG/M
3300011270\|Ga0137391_10485076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1048	Open in IMG/M
3300011270\|Ga0137391_11508250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	517	Open in IMG/M
3300011271\|Ga0137393_10320202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1322	Open in IMG/M
3300011271\|Ga0137393_11670525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300011998\|Ga0120114_1044329	All Organisms → cellular organisms → Bacteria → Terrabacteria group	880	Open in IMG/M
3300012096\|Ga0137389_10436663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1120	Open in IMG/M
3300012096\|Ga0137389_10643500	All Organisms → cellular organisms → Bacteria → Terrabacteria group	911	Open in IMG/M
3300012096\|Ga0137389_11023383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	708	Open in IMG/M
3300012096\|Ga0137389_11200703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	650	Open in IMG/M
3300012189\|Ga0137388_10068158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2955	Open in IMG/M
3300012189\|Ga0137388_11243889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	683	Open in IMG/M
3300012189\|Ga0137388_11718758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	561	Open in IMG/M
3300012203\|Ga0137399_10700217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	853	Open in IMG/M
3300012206\|Ga0137380_10120426	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300012206\|Ga0137380_10876012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	772	Open in IMG/M
3300012206\|Ga0137380_10965117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	730	Open in IMG/M
3300012207\|Ga0137381_10173207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1864	Open in IMG/M
3300012209\|Ga0137379_10904406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	787	Open in IMG/M
3300012209\|Ga0137379_11517582	All Organisms → cellular organisms → Bacteria → Terrabacteria group	571	Open in IMG/M
3300012210\|Ga0137378_10362150	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300012211\|Ga0137377_11818646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	528	Open in IMG/M
3300012212\|Ga0150985_102100422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1966	Open in IMG/M
3300012212\|Ga0150985_103073346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	766	Open in IMG/M
3300012212\|Ga0150985_104814119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	691	Open in IMG/M
3300012212\|Ga0150985_105089750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	661	Open in IMG/M
3300012212\|Ga0150985_120457647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	844	Open in IMG/M
3300012349\|Ga0137387_10389153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1011	Open in IMG/M
3300012349\|Ga0137387_11168548	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
3300012354\|Ga0137366_10965549	All Organisms → cellular organisms → Bacteria → Terrabacteria group	595	Open in IMG/M
3300012363\|Ga0137390_11108368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	741	Open in IMG/M
3300012363\|Ga0137390_11590867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	591	Open in IMG/M
3300012405\|Ga0134041_1115875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	733	Open in IMG/M
3300012469\|Ga0150984_104248843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	889	Open in IMG/M
3300012469\|Ga0150984_112258416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2011	Open in IMG/M
3300012927\|Ga0137416_10369014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1208	Open in IMG/M
3300013296\|Ga0157374_10600369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1111	Open in IMG/M
3300013764\|Ga0120111_1020077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1889	Open in IMG/M
3300013772\|Ga0120158_10374573	Not Available	662	Open in IMG/M
3300013772\|Ga0120158_10408604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300018468\|Ga0066662_10111798	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300018468\|Ga0066662_11329353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	739	Open in IMG/M
3300020069\|Ga0197907_10020420	All Organisms → cellular organisms → Bacteria → Terrabacteria group	547	Open in IMG/M
3300020070\|Ga0206356_11815165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	791	Open in IMG/M
3300021560\|Ga0126371_11789107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	736	Open in IMG/M
3300022557\|Ga0212123_10854715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300025910\|Ga0207684_10020006	All Organisms → cellular organisms → Bacteria	5719	Open in IMG/M
3300025910\|Ga0207684_10906178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	741	Open in IMG/M
3300025930\|Ga0207701_10347668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1283	Open in IMG/M
3300025981\|Ga0207640_11476803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	610	Open in IMG/M
3300026291\|Ga0209890_10140946	All Organisms → cellular organisms → Bacteria → Terrabacteria group	808	Open in IMG/M
3300026371\|Ga0257179_1048025	All Organisms → cellular organisms → Bacteria → Terrabacteria group	552	Open in IMG/M
3300027857\|Ga0209166_10019644	All Organisms → cellular organisms → Bacteria	4237	Open in IMG/M
3300027857\|Ga0209166_10048615	All Organisms → cellular organisms → Bacteria	2488	Open in IMG/M
3300027874\|Ga0209465_10536777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300027875\|Ga0209283_10371925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	935	Open in IMG/M
3300027911\|Ga0209698_11032652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	612	Open in IMG/M
3300028536\|Ga0137415_10234006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1649	Open in IMG/M
3300028536\|Ga0137415_10413451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1154	Open in IMG/M
3300029636\|Ga0222749_10466906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	678	Open in IMG/M
3300031520\|Ga0272428_1007046	All Organisms → cellular organisms → Bacteria	16542	Open in IMG/M
3300034384\|Ga0372946_0339320	All Organisms → cellular organisms → Bacteria → Terrabacteria group	729	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.07%
Host-Associated	Host-Associated	11.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Plants	Host-Associated → Plants	11.93%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.59%
Sediment	Environmental → Aquatic → Sediment	2.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.83%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.72%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.34%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.92%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031520	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1019386981	3300004479	Soil	MNAWPQTPGADTFAIPEDRQAHQLDVYLNDGRLTDVRLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINLHQAAST*
Ga0062594_1024512472	3300005093	Soil	CQGSPTPHPTIAPMTDWPATPSADKLAIPEGRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKEGGEISAKVKGVRLATRFGDEIHIHNRPT*
Ga0066680_106870282	3300005174	Soil	MREEWPSTPGADTLAIPANRQNHVLDVYLLNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQAPAPARSV*
Ga0066678_103960122	3300005181	Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLADGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQAPAPARSV*
Ga0070671_1017804052	3300005355	Switchgrass Rhizosphere	MADWPAAPGRDLLAVPENRENHVLDVYLDGGRPVDLRLDGESVYPAWFKLEFKETGEVSAKVKGVRLATRFGDVINIHQAMR*
Ga0070708_1004736201	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNAQWPSAPGSDTLAIPANRQNHVLDVYLSEGRLTDVHLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGD
Ga0070706_1000235133	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VHERWPATPGADTLAIPENRENHVLDVYLTNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRYGDAINIHPAPG*
Ga0070706_1006663971	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EQWPSAPGSDTLAIPASRKNHVLDVYLRDGRLTDVHLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDEINLHQASA*
Ga0070707_1000779191	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNEQWPSAPGSDTLAIPANRKNHVLDVYLRDGRLTDVHLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDQINLHQASA*
Ga0070698_1006558072	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VHERWPATPGADTLAIPENRENHVLDVYLTNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRYGDAINIHPGPA*
Ga0070699_1005607492	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNEQWPSAPGSDTLAIPANRKNHVLDVYLSEGRLTDVHLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDEINLHQASA*
Ga0070730_100136034	3300005537	Surface Soil	MDVWPQTPGADTFALPEDRQAHQLDVYLTDGRLTDVRLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDAINIHHRAP*
Ga0070730_100533542	3300005537	Surface Soil	VSEHWPSTPGIDTLAVPENRHNHVLDVFLENGRLTDLRLDGEPVFPTWFKIEWKESGEVSAKVKGVRLATRFGDAINIHQS*
Ga0066701_102560482	3300005552	Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG*
Ga0066700_105090581	3300005559	Soil	RAYTLAMRDWPATPAADKLAIPAGRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGFRLATRFGDAINIHQGRP*
Ga0066703_107869822	3300005568	Soil	MREEWPSTPGADTLAIPANRENHVLDVYLMNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRL
Ga0066702_102517142	3300005575	Soil	MRDWPATPPAETLAVPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGFRLATRFGDAINIHQGRP*
Ga0068854_1011207932	3300005578	Corn Rhizosphere	MTDWPATPSADKLAIPEGRENHVLDVYLVDGRPVDLRLDGESLYPVWFKLEFKESGEISAKVKGVRLATRFGDEIHIHHRPT*
Ga0066691_107786852	3300005586	Soil	MNEQWPSTPGSDTLAIPANRENHVLDVYLTGGRLTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQTPAPAKST*
Ga0066903_1000819036	3300005764	Tropical Forest Soil	MRDWPATPPADTLAIPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKENGQVSAKVKGLRLATRFGDAINIHQGGP*
Ga0066903_1052484982	3300005764	Tropical Forest Soil	VTDWPATPGADTFVIPEGRENHVLDVFLADGKPVDLRLDGESLFPVWFKLEFKESGEISAKVKGVRLATRFGDRINIHIDHA*
Ga0068858_1017012161	3300005842	Switchgrass Rhizosphere	MDAWPETPGADTFAIPEDRQAHRLDVYLTDGRLTDVQLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVIALHQA*
Ga0080027_104467772	3300005993	Prmafrost Soil	MEAWPQTPGADTFAVPEDRQAHRLDVYLTDGRLTDVHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQAGSA*
Ga0066789_101379892	3300005994	Soil	MEAWPQTPGADTIAVPEDRQAHRLDVYLTDGRLTDVHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQAGSA*
Ga0075028_1009198821	3300006050	Watersheds	YCRRHHLPQREDTPFIVTGMRAEWPSTPGSDTLAIPENRQNHVLDVYLVAGRLTDLRLDGESMYPTWFKIEWKETGEVSAKVKGVRLATRFGDEINIHQA*
Ga0075030_1003305003	3300006162	Watersheds	MDAWPQTPSADTFAIPEGREAHRLDVYLTDGRLTDVLLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINLHQVGSA*
Ga0066658_105494021	3300006794	Soil	MRDWPATPPADTLAIPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGVRLATRFG
Ga0066665_101946493	3300006796	Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPASAKSG*
Ga0066660_102367182	3300006800	Soil	MRDWPATPPAETLAVPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGVRLATRFGDAINIHQGRP*
Ga0073928_105714232	3300006893	Iron-Sulfur Acid Spring	MNAWPETPGADTFALPEDRQAHQLDVYLLDGRLTDVRLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINVHLGAP*
Ga0066710_1001607081	3300009012	Grasslands Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLADGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG
Ga0066710_1017123102	3300009012	Grasslands Soil	VLEPAPSEHHVLDVYLVDGRPVELVLDGESVFPTWFKLEFKETGELSAKVKGVRLATRFGDVININVGVRERSARAP
Ga0099828_104257402	3300009089	Vadose Zone Soil	MSEHWPSIPGSDTLAIPANRENHVLDVYLTDGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHPA*
Ga0099828_107877101	3300009089	Vadose Zone Soil	MREEWPATPGSDTLAIPANRENHVLDVYLVDGRVADVRLDGESVHPTWFKIEFKEDGQVSAKVKGVRLATRYGDSINVHIGKP*
Ga0099827_106658602	3300009090	Vadose Zone Soil	MDTLAIPENRENHVLDVYLVDGRPIDLRLDGESLYPVWFKLEFKGDGEVSAKVKGVRLATRFGDAINIHHVQQ*
Ga0066709_1008065253	3300009137	Grasslands Soil	MSDKWPSTPSADILALPDNRENHVLDVYLVSGRLADVRLDGESVYPTWFKIEWKETGDVSAKVKGVRLATRFGDQINLHQSGPAKSG*
Ga0066709_1012246992	3300009137	Grasslands Soil	MSERWPSTPGSDTLAIPANRQNHVLDVYLTNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG*
Ga0114129_100591236	3300009147	Populus Rhizosphere	MSALPRTPDADAPTDSGAPDNHVLDVYLEGGKLVEVRLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDEINIHQRQD*
Ga0116854_10066352	3300009400	Soil	MDAWPQIPSADTFAVSTDREAHRLDVYLADGKLVDVRLNDESVHPTWFKIEWKENGEVSAKVKGVRLATRFGDQITIHQQAAAEPAR*
Ga0126315_104152723	3300010038	Serpentine Soil	MRDWPETPSADKLAIPADRQNHVLDVYLADNRPVDLRLDGESVFPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINIHHVPPK*
Ga0126376_102974834	3300010359	Tropical Forest Soil	MDTLAIPEDRENHVLDVYLVDSKPVELKLDGESLFPVWFKLEFKETGEISAKVKGVRLATRFGDEINIHQGSRKAD*
Ga0126381_1026042762	3300010376	Tropical Forest Soil	VTDWPATPGAETFVIPEGRENHVLDVFLADGKPVDLRLDGESLFPVWFKLEFKESGEISAKVKGVRLATRFGDRINIHVDRAYDRPGGNGRHADPAP*
Ga0126383_131002181	3300010398	Tropical Forest Soil	VTDWPATPGADTFVIPEGRENHVLDVFLADGKPVDLRLDGESLFPVWFKLEFKESGEISAKVKGVRLATRFGDRINIHVDRA*
Ga0134127_114952442	3300010399	Terrestrial Soil	MRADWPSTPGRETLAIPEHRANHVLDVYLVNGRLDDVRLDGESVHPTWFKIEWKETGEVSAKVKGIRLATRFGDEINLHQSLAPAKSG*
Ga0137392_108146151	3300011269	Vadose Zone Soil	MSEHWPSTPGSDTLAIPANRENHVLDVYLANGRVTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRYGDEINLHQSSP*
Ga0137391_100116883	3300011270	Vadose Zone Soil	MSEHWPSTPGSDTLAIPADRESHVLDVYLLNGRVADIHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDEINLHQGPAPAKSA*
Ga0137391_101978833	3300011270	Vadose Zone Soil	MRDWPATPSADKLAIPEGRENHVLDVYLVDSRPVDLRLDGESLFPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINVHNGPP*
Ga0137391_104678152	3300011270	Vadose Zone Soil	VTERWPATPGADTLAIPENRENHVLDVYLVNGRVADVRLDGESVHPTWLKVEFKETGEVSAKVKGLRLATRYGDSINVRVGPP*
Ga0137391_104850761	3300011270	Vadose Zone Soil	VPGVSREGGSGSFALKSFVMPQWPATPSADKLAVPEGRENHVLDVYLVDSRPVELLLDGESLFPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINIRTGAP*
Ga0137391_115082501	3300011270	Vadose Zone Soil	MDAWPETAGADTFAIPEDRQAHQLDVYLTDGQLTDVRLDGESVHPTWFKVEWKESGEVSAKVKGVRLATRFGDVINIHLGAP*
Ga0137393_103202022	3300011271	Vadose Zone Soil	VPGVSREGGLGSFALKSFVMPQWPATPSADKLAVPEGRENHVLDVYLVDSRPVELRLDGESLFPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINIRTGAP*
Ga0137393_116705251	3300011271	Vadose Zone Soil	PGSDTLAIPANRENHVLDVYLANGRVTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRYGDEINLHQSSP*
Ga0120114_10443292	3300011998	Permafrost	MDAWPQTPGADTFAIPEDRQAHQLDVYLTDGRLTDVRLDGESVHPTWFKIEWKETGEVSAKVKGVKLATRFGDVINLHQAGSA*
Ga0137389_104366632	3300012096	Vadose Zone Soil	MNEQWPSTPGSDTLAIPANRENHVLDVYWTGGRLTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQTPAPAKST*
Ga0137389_106435003	3300012096	Vadose Zone Soil	LYWCKSERWPSTPGSDTLAIPANRENHVLDVYLTDGRVADDRLDGESVHPTWFKLEFKETGEVSAKVKGVRLATRFGDEINVHPA*
Ga0137389_110233831	3300012096	Vadose Zone Soil	MDAWPRTPGADAFAVPAGREAHQLDVYLIDGHLTDVRLDGESVYPTWFKLEFKETGEVSAKVKGVRLGTRFGDEINIHQVPAARAI*
Ga0137389_112007031	3300012096	Vadose Zone Soil	MREEWPSTPGADTLAIPANRQNHVLDVYLLNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATR
Ga0137388_100681584	3300012189	Vadose Zone Soil	MSEHWPSTPGSDTLAIPADRESHVLDVYLLNGRVADVRLDGESVYPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVH
Ga0137388_112438891	3300012189	Vadose Zone Soil	VSREGGLGSFALKSFVMPQWPATPSADKLAVPEGRENHVLDVYLVDSRPVELRLDGESLLPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINIRTGAP*
Ga0137388_117187582	3300012189	Vadose Zone Soil	MQAEMPVNFDQPMRDWPATPSADKLAIPEGRENHVLDVYLVDSRAVELRLDGESLFPVWFKLESKESGEVSAKVKGVRLATRFGDVINIHHGGPAR*
Ga0137399_107002171	3300012203	Vadose Zone Soil	MSEHWPSTPGSDTLAIPADRESHVLDVYLLNGRVADIHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDEINLHQGPAPVKSA*
Ga0137380_101204263	3300012206	Vadose Zone Soil	MSEHWPTTPGSDTLANPANRENHVLDVYLADGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG*
Ga0137380_108760121	3300012206	Vadose Zone Soil	MAGWPQAPGDEALSIPAGQEGHVLDVYLQDSRPVDLRLDGESLFPVWFKLEFKEGGEVSAKVKGVRLATRLGDVINIH
Ga0137380_109651171	3300012206	Vadose Zone Soil	MDAWPRTPGADAFAVPEGRKAHQLDVYLIDGHLTDVRLDGESVHPTWFKIEWKESGEVSAKVKGVKLATRFGDVINLHQAGSA
Ga0137381_101732073	3300012207	Vadose Zone Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVVDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQAPAPARSV*
Ga0137379_109044061	3300012209	Vadose Zone Soil	MSEHWPTTPGSDTLANPANRENHVLDVYLADGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQSPAQAKSI*
Ga0137379_115175821	3300012209	Vadose Zone Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVVDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG*
Ga0137378_103621503	3300012210	Vadose Zone Soil	MNEQWPSTPGSDTLAIPANRANHVLDVYLTGGRLTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHQTPAPAKST*
Ga0137377_118186461	3300012211	Vadose Zone Soil	MSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVVDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRF
Ga0150985_1021004221	3300012212	Avena Fatua Rhizosphere	MSAVTDWPATPGAATFVIPEGRENHVLDVYLVDGKAVDLRLDGESLYPVWFKLEFKESGEVSAKVKGVRLATRYGDRINVHLQ
Ga0150985_1030733462	3300012212	Avena Fatua Rhizosphere	MDTFVVPSGRENHVLDVYLVDSRCVDVVLDGESLFPVWFKVEFKESGEISAKVKGVKLATRYGDAINIHHGQP*
Ga0150985_1048141191	3300012212	Avena Fatua Rhizosphere	MVDWPATPSADTLAIPENRENHVLDVYLVDNRPVDLRLDGESLFPVWFKLEFKESGEVSAKVKGVRLATRYGDVINIHHQGPPLSTG*
Ga0150985_1050897502	3300012212	Avena Fatua Rhizosphere	MGWPQAPGEEALDLPAGQEGHVLDVYLEDGKLVDVHLDGESVYPTWFKLEFKESGEVSAKVKGVRLATRMGDVINIHQGRPR*
Ga0150985_1204576472	3300012212	Avena Fatua Rhizosphere	VRDYNPGAMPAPDWPATPSADTFVVPEGRENHVLDVFLRDNKPVDLVLDGDSVFPVWFKLEFKESGEVSAKVKGLRLATRFGDRINVHLG*
Ga0137387_103891531	3300012349	Vadose Zone Soil	MREWPATPRADKHAIPENRQNHVLDVYLVDGHLADVRLDGESVFPTWFKIEWKETGEVSAKVKGVRLGTRFGDEINLHQSVRGKSD*
Ga0137387_111685482	3300012349	Vadose Zone Soil	LYWCMSERWPSTPGSDTLAIPANRENHVLDVYLMNGRVVDVRLDSESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINLHQAPPSAKSG*
Ga0137366_109655491	3300012354	Vadose Zone Soil	MNEQWPSTPGSDTLAIPANRANHVLDVYLTGGRLTDVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINV
Ga0137390_111083681	3300012363	Vadose Zone Soil	MRDWPATPSADKLAIPAGRENHVLDVYLVDSRPVDLRLDGESLFPVWFKLEFKEGGEVSAKVKGVRLATRFGDVINVHNGPPPSMSTAE*
Ga0137390_115908671	3300012363	Vadose Zone Soil	MDTLAIPENRENHVLDVYLVDGRPIDLRLDGESLYPVWFKLEFKGDGEVSAKVKGVRLATRFGDAINIHHVQ
Ga0134041_11158751	3300012405	Grasslands Soil	KSGLSAELLECAMRDWPATPPADTLAIPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGVRLATRFGDAINIHQGRP*
Ga0150984_1042488431	3300012469	Avena Fatua Rhizosphere	RDYNPGEMPAPDWPATPSADTFVVPEGRENHVLDVFLRDNKPVDLVLDGDSVFPVWFKLEFKESGEVSAKVKGLRLATRFGDRINVHLG*
Ga0150984_1122584161	3300012469	Avena Fatua Rhizosphere	MSAVTDWPATPGAATFVIPEGRENHVLDVYLVDGKAVDLRLDGESLYPVWFKLEFKESGEVSAKVKGVRLATRYGDRINVHLQTP*
Ga0137416_103690141	3300012927	Vadose Zone Soil	MREEWPSTPGTDTLAIPENRQNHVLDVYLVNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDSINVRVGQP*
Ga0157374_106003691	3300013296	Miscanthus Rhizosphere	MDAWPQTPGADTFAIPEDRQAHQLDVYLKDGHLTDVRLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINLHQAAST*
Ga0120111_10200772	3300013764	Permafrost	MDAWPQTPGADTFAVPEGREMHRLDVYLTDGQLTDVRLDGESVYPTWFKIEWKESGEVSAKVKGVKLATRFGDVINLHQAGSA*
Ga0120158_103745732	3300013772	Permafrost	MDAWPETPGADTFAIPEDRQAHQLDVYLMDGQLTDVRLDGESVHPTWFKVEWKETGEVSAKVKGVRLATRFGDVINIHHGAP*
Ga0120158_104086042	3300013772	Permafrost	RRNIPEMDNWPATPSADKLAVIENRENHVLDVYLVDGRAVELRLDGESLFPVWFKLEFKERGDVSAKVKGIRLATRFGDVINIHHGSP*
Ga0066662_101117983	3300018468	Grasslands Soil	MSDWPATPSAETLAIPANREKHVLDVYLAQSRPVDVRLDGESLFPVWFKLEFKEDGNVSAKVKGVRLATRYGDVITIHQQPG
Ga0066662_113293532	3300018468	Grasslands Soil	MRDWPATPPAETLAVPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKETGQVSAKVKGFRLATRFGDAINIHQGRP
Ga0197907_100204201	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	AGSDTFAIPEGREAHQLDVYLADGHLTDVHLDGESVYPTWFKIEWKESGEVSAKVKGVRLATRYGDVINVHQAPAPARSA
Ga0206356_118151652	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MDAWPETAGSDTFAIPEGREAHQLDVYLADGHLTDVHLDGESVYPTWFKIEWKESGEVSAKVKGVRLATRYGDVINVHQAPAPARSA
Ga0126371_117891073	3300021560	Tropical Forest Soil	MDTLAIPEDRENHVLDVYLVDSKPVELKLDGESLFPVWFKLEFKETGEISAKVKGVRLATRFGDEINIHQGSRKAD
Ga0212123_108547151	3300022557	Iron-Sulfur Acid Spring	MNAWPETPGADTFALPEDRQAHQLDVYLLDGRLTDVRLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINVHLGAP
Ga0207684_100200063	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VHERWPATPGADTLAIPENRENHVLDVYLTNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRYGDAINIHPAPG
Ga0207684_109061782	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEQWPSAPGSDTLAIPANRKNHVLDVYLRDGRLTDVHLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFG
Ga0207701_103476682	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MVDWPATPSADTLAIPENRENHVLDVYLVDSRPVDLRLDGESLFPVWFKLEFKESGEVSAKVKGVRLATRFGDVINIHHQASVPH
Ga0207640_114768032	3300025981	Corn Rhizosphere	MTDWPATPSADKLAIPEGRENHVLDVYLVDGRPVDLRLDGESLYPAWFKLEFKESGEISAKVKGVRLATRFGDEIHIHHRPT
Ga0209890_101409461	3300026291	Soil	MEAWPQTPGADTIAVPEDRQAHRLDVYLTDGRLTDVHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQAGSA
Ga0257179_10480251	3300026371	Soil	MSEHWPSTPGSDTLAIPADRESHVLDVYLLNGRVADIHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDEINLHQGPAPAKSA
Ga0209166_100196444	3300027857	Surface Soil	MDVWPQTPGADTFALPEDRQAHQLDVYLTDGRLTDVRLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDAINIHHRAP
Ga0209166_100486153	3300027857	Surface Soil	VSEHWPSTPGIDTLAVPENRHNHVLDVFLENGRLTDLRLDGEPVFPTWFKIEWKESGEVSAKVKGVRLATRFGDAINIHQS
Ga0209465_105367772	3300027874	Tropical Forest Soil	MRDWPATPPADTLAIPEDRENHVLDVYLVDGRPVDLRLDGESLFPVWFKLEFKENGQVSAKVKGLRLATRFGDAINIHQGGP
Ga0209283_103719252	3300027875	Vadose Zone Soil	MSEHWPSIPGSDTLAIPANRENHVLDVYLTDGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDEINVHPA
Ga0209698_110326521	3300027911	Watersheds	MDAWPQTPSADTFAIPEGREAHRLDVYLTDGRLTDVLLDGESVHPTWFKIEWKESGEVSAKVKGVRLATRFGDVINLHQVGSA
Ga0137415_102340063	3300028536	Vadose Zone Soil	MREEWPSTPGTDTLAIPENRQNHVLDVYLVNGRVADVRLDGESVHPTWFKIEFKETGEVSAKVKGVRLATRFGDSINVRVGQP
Ga0137415_104134512	3300028536	Vadose Zone Soil	MSEHWPSTPGSDTLAIPADRESHVLDVYLLNGRVADIHLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDEINLHQGPAPVKSA
Ga0222749_104669062	3300029636	Soil	MDAWPQTPGADTFAIPEDRQAHQLDVYLTDGRLTDVRLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQVGSA
Ga0272428_100704611	3300031520	Rock	MDAWPQIPGGDTLAIPEGREGHQLDVYLTNGELIDVRLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQAGSA
Ga0372946_0339320_181_432	3300034384	Soil	MEHWPQTPSADTLAIPEGREAHHLDVYLAPDGQLSDVRLDGESVLPTWFKIEWKESGEVSAKIKGVRLATRYGDQITIHAEPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088622

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences