Metagenome / Metatranscriptome Family F088584

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088584
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQS
Number of Associated Samples	81
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	32.11 %
% of genes near scaffold ends (potentially truncated)	82.57 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (70.642 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (22.936 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.89% β-sheet: 0.00% Coil/Unstructured: 58.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07366	SnoaL	5.50
PF00355	Rieske	4.59
PF10604	Polyketide_cyc2	4.59
PF00072	Response_reg	1.83
PF00903	Glyoxalase	1.83
PF12697	Abhydrolase_6	1.83
PF14588	YjgF_endoribonc	0.92
PF03358	FMN_red	0.92
PF07040	DUF1326	0.92
PF14224	DUF4331	0.92
PF08240	ADH_N	0.92
PF13450	NAD_binding_8	0.92
PF13508	Acetyltransf_7	0.92
PF00210	Ferritin	0.92
PF00296	Bac_luciferase	0.92
PF02776	TPP_enzyme_N	0.92
PF01638	HxlR	0.92
PF07995	GSDH	0.92
PF02195	ParBc	0.92
PF02743	dCache_1	0.92
PF05199	GMC_oxred_C	0.92
PF07992	Pyr_redox_2	0.92
PF00571	CBS	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.92
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.92
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.92
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.92
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.24 %
Unclassified	root	N/A	13.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.24 %
Unclassified	root	N/A	13.76 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	70.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.60 %
Unclassified	root	N/A	13.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.83 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Gloeobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria	1.83 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Gloeobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales	1.83 %
Methanomicrobiaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Pseudoxanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Methanoculleus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus	1.83 %
Gloeobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
unclassified Pseudoxanthomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Gloeobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter	1.83 %
unclassified Methanoculleus	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Pseudoxanthomonas sp. CF125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Methanoculleus sp. MH98A	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	1.83 %
Gloeobacter violaceus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter violaceus	1.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.83 %
Pseudoxanthomonas sp. CF125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918002\|contig02448	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
2140918002\|contig05788	All Organisms → cellular organisms → Archaea	681	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10006020	All Organisms → cellular organisms → Bacteria	3324	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10045543	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300000858\|JGI10213J12805_10005245	All Organisms → cellular organisms → Archaea	2946	Open in IMG/M
3300000858\|JGI10213J12805_10983195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter violaceus	993	Open in IMG/M
3300000953\|JGI11615J12901_11207081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter violaceus	539	Open in IMG/M
3300004157\|Ga0062590_102568069	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
3300005093\|Ga0062594_101118867	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
3300005289\|Ga0065704_10275122	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005290\|Ga0065712_10229549	All Organisms → cellular organisms → Archaea	1016	Open in IMG/M
3300005332\|Ga0066388_103306190	All Organisms → cellular organisms → Archaea	824	Open in IMG/M
3300005332\|Ga0066388_106896472	All Organisms → cellular organisms → Archaea	572	Open in IMG/M
3300005336\|Ga0070680_101361814	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005345\|Ga0070692_10268945	All Organisms → cellular organisms → Archaea	1028	Open in IMG/M
3300005441\|Ga0070700_101015809	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005441\|Ga0070700_101316657	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005549\|Ga0070704_101331189	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300005558\|Ga0066698_10383529	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300005562\|Ga0058697_10294682	All Organisms → cellular organisms → Archaea	771	Open in IMG/M
3300005981\|Ga0081538_10083319	All Organisms → cellular organisms → Archaea	1691	Open in IMG/M
3300006796\|Ga0066665_11681441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	502	Open in IMG/M
3300006845\|Ga0075421_101498122	All Organisms → cellular organisms → Archaea	738	Open in IMG/M
3300006845\|Ga0075421_102222191	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	578	Open in IMG/M
3300006846\|Ga0075430_100903533	All Organisms → cellular organisms → Archaea	727	Open in IMG/M
3300006852\|Ga0075433_11087270	Not Available	695	Open in IMG/M
3300006852\|Ga0075433_11666042	All Organisms → cellular organisms → Archaea	549	Open in IMG/M
3300006854\|Ga0075425_101516183	All Organisms → cellular organisms → Archaea	757	Open in IMG/M
3300006871\|Ga0075434_100627462	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300006871\|Ga0075434_102544662	All Organisms → cellular organisms → Archaea	513	Open in IMG/M
3300006876\|Ga0079217_11336792	All Organisms → cellular organisms → Archaea	556	Open in IMG/M
3300006880\|Ga0075429_101472843	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	592	Open in IMG/M
3300007076\|Ga0075435_100188723	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300009081\|Ga0105098_10587989	All Organisms → cellular organisms → Archaea	578	Open in IMG/M
3300009100\|Ga0075418_10755397	All Organisms → cellular organisms → Archaea	1049	Open in IMG/M
3300009100\|Ga0075418_11167442	Not Available	834	Open in IMG/M
3300009147\|Ga0114129_10454818	All Organisms → cellular organisms → Archaea	1679	Open in IMG/M
3300009147\|Ga0114129_11760296	All Organisms → cellular organisms → Archaea	755	Open in IMG/M
3300009147\|Ga0114129_12925817	All Organisms → cellular organisms → Archaea	564	Open in IMG/M
3300009147\|Ga0114129_12973855	All Organisms → cellular organisms → Archaea	558	Open in IMG/M
3300009156\|Ga0111538_14039415	All Organisms → cellular organisms → Archaea	507	Open in IMG/M
3300009157\|Ga0105092_10379405	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300009840\|Ga0126313_10225643	All Organisms → cellular organisms → Archaea	1446	Open in IMG/M
3300010029\|Ga0105074_1065342	All Organisms → cellular organisms → Archaea	656	Open in IMG/M
3300010036\|Ga0126305_10640669	Not Available	716	Open in IMG/M
3300010037\|Ga0126304_10025734	All Organisms → cellular organisms → Archaea	3414	Open in IMG/M
3300010037\|Ga0126304_10691164	All Organisms → cellular organisms → Archaea	689	Open in IMG/M
3300010039\|Ga0126309_10040416	All Organisms → cellular organisms → Archaea	2181	Open in IMG/M
3300010040\|Ga0126308_10093382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1831	Open in IMG/M
3300010040\|Ga0126308_10160196	All Organisms → cellular organisms → Archaea → TACK group	1427	Open in IMG/M
3300010040\|Ga0126308_10276908	Not Available	1098	Open in IMG/M
3300010040\|Ga0126308_10953715	All Organisms → cellular organisms → Archaea	600	Open in IMG/M
3300010042\|Ga0126314_10429483	All Organisms → cellular organisms → Archaea → TACK group	954	Open in IMG/M
3300010042\|Ga0126314_11213864	All Organisms → cellular organisms → Archaea	564	Open in IMG/M
3300010044\|Ga0126310_10201767	All Organisms → cellular organisms → Archaea	1308	Open in IMG/M
3300010046\|Ga0126384_11085724	Not Available	733	Open in IMG/M
3300010046\|Ga0126384_11115315	All Organisms → cellular organisms → Archaea	724	Open in IMG/M
3300010048\|Ga0126373_13242496	All Organisms → cellular organisms → Archaea	506	Open in IMG/M
3300010048\|Ga0126373_13263820	All Organisms → cellular organisms → Archaea	505	Open in IMG/M
3300010166\|Ga0126306_10002412	All Organisms → cellular organisms → Archaea	10519	Open in IMG/M
3300010166\|Ga0126306_10494629	Not Available	966	Open in IMG/M
3300010166\|Ga0126306_10539747	Not Available	925	Open in IMG/M
3300010337\|Ga0134062_10748081	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300010362\|Ga0126377_10485180	Not Available	1265	Open in IMG/M
3300010366\|Ga0126379_12103303	All Organisms → cellular organisms → Archaea	666	Open in IMG/M
3300010376\|Ga0126381_100085747	All Organisms → cellular organisms → Archaea	3979	Open in IMG/M
3300010376\|Ga0126381_100683526	All Organisms → cellular organisms → Archaea	1466	Open in IMG/M
3300010376\|Ga0126381_104306390	All Organisms → cellular organisms → Archaea	551	Open in IMG/M
3300011269\|Ga0137392_11386885	All Organisms → cellular organisms → Archaea	562	Open in IMG/M
3300012514\|Ga0157330_1007066	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012901\|Ga0157288_10403601	All Organisms → cellular organisms → Archaea	512	Open in IMG/M
3300012904\|Ga0157282_10092318	All Organisms → cellular organisms → Archaea	833	Open in IMG/M
3300012957\|Ga0164303_10126253	All Organisms → cellular organisms → Archaea	1314	Open in IMG/M
3300012971\|Ga0126369_10589012	Not Available	1181	Open in IMG/M
3300012971\|Ga0126369_12672837	Not Available	583	Open in IMG/M
3300013308\|Ga0157375_12559816	All Organisms → cellular organisms → Archaea	609	Open in IMG/M
3300014310\|Ga0075331_1173449	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300015200\|Ga0173480_11158633	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
3300018027\|Ga0184605_10002920	Not Available	5836	Open in IMG/M
3300018061\|Ga0184619_10427827	Not Available	594	Open in IMG/M
3300018072\|Ga0184635_10236149	All Organisms → cellular organisms → Archaea	725	Open in IMG/M
3300018072\|Ga0184635_10246177	All Organisms → cellular organisms → Archaea	708	Open in IMG/M
3300018466\|Ga0190268_11396192	All Organisms → cellular organisms → Archaea	599	Open in IMG/M
3300018466\|Ga0190268_12379422	Not Available	502	Open in IMG/M
3300018469\|Ga0190270_12379900	All Organisms → cellular organisms → Archaea	591	Open in IMG/M
3300019361\|Ga0173482_10147483	All Organisms → cellular organisms → Archaea	913	Open in IMG/M
3300019767\|Ga0190267_10924744	All Organisms → cellular organisms → Archaea	601	Open in IMG/M
3300019767\|Ga0190267_11178263	Not Available	559	Open in IMG/M
3300019885\|Ga0193747_1069704	All Organisms → cellular organisms → Archaea	867	Open in IMG/M
3300019997\|Ga0193711_1025164	All Organisms → cellular organisms → Archaea	752	Open in IMG/M
3300020003\|Ga0193739_1114276	All Organisms → cellular organisms → Archaea	673	Open in IMG/M
3300020020\|Ga0193738_1004890	All Organisms → cellular organisms → Archaea	4677	Open in IMG/M
3300021560\|Ga0126371_11807871	All Organisms → cellular organisms → Archaea	732	Open in IMG/M
3300025559\|Ga0210087_1093252	All Organisms → cellular organisms → Archaea	593	Open in IMG/M
3300025905\|Ga0207685_10742935	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300026075\|Ga0207708_11296701	Not Available	638	Open in IMG/M
3300027577\|Ga0209874_1122907	All Organisms → cellular organisms → Archaea	604	Open in IMG/M
3300027636\|Ga0214469_1089689	All Organisms → cellular organisms → Archaea	909	Open in IMG/M
3300027647\|Ga0214468_1061778	All Organisms → cellular organisms → Archaea	965	Open in IMG/M
3300027947\|Ga0209868_1021659	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
3300031228\|Ga0299914_10639409	All Organisms → cellular organisms → Archaea	905	Open in IMG/M
3300031421\|Ga0308194_10061927	All Organisms → cellular organisms → Archaea	988	Open in IMG/M
3300031852\|Ga0307410_10584259	All Organisms → cellular organisms → Archaea	930	Open in IMG/M
3300031911\|Ga0307412_10224878	All Organisms → cellular organisms → Archaea	1441	Open in IMG/M
3300032002\|Ga0307416_100030542	All Organisms → cellular organisms → Archaea	4044	Open in IMG/M
3300032002\|Ga0307416_100238910	All Organisms → cellular organisms → Archaea	1758	Open in IMG/M
3300032126\|Ga0307415_101009273	All Organisms → cellular organisms → Archaea	774	Open in IMG/M
3300034143\|Ga0334961_031977	All Organisms → cellular organisms → Archaea	901	Open in IMG/M
3300034773\|Ga0364936_091891	All Organisms → cellular organisms → Archaea	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.23%
Host-Associated	Host-Associated	24.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.81%
Plants	Host-Associated → Plants	24.77%
Aquatic	Environmental → Aquatic	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.10%
Sediment	Environmental → Aquatic → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Marine	Environmental → Aquatic → Marine	0.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Roots	Host-Associated → Plants → Roots	0.92%
Phylloplane	Host-Associated → Plants → Phylloplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.10%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Sand	Environmental → Terrestrial → Soil → Sand	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.75%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.68%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.01%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.75%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Rhizosphere And Bulk Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918002	Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027947	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034143	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNS	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MSB1_00070430	2140918002	Rhizosphere And Bulk Soil	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMGSP
MSB1_00112910	2140918002	Rhizosphere And Bulk Soil	MNTNDIMSQIEMNKAIIQRYFDAYNNKNETIFDEIIS
AF_2010_repII_A1DRAFT_100060202	3300000597	Forest Soil	MPQIEFNKSIIQHFFEAYNNKNEAIFDKIIGPEYVDHGTSIIYC*
AF_2010_repII_A1DRAFT_100455433	3300000597	Forest Soil	MNCNNTMSQVETNKAIINRYFEAYNTKNEAIFDEIIA
JGI10213J12805_100052451	3300000858	Soil	MQYIIRRMNTNETMSQIEMNKAIKRYFEAYNNKNEAIFDEIIA
JGI10213J12805_109831951	3300000858	Soil	VNKVYYINMNINNDPMSQIELNKAIIQRYFEAYNNKNEAIFEEIISPDYIDH*
JGI11615J12901_112070811	3300000953	Soil	MCILHQHMNITDRASQIELNKAIIQRYFEAYNNKNEAIFDEIISPD
Ga0062590_1025680691	3300004157	Soil	MYINESTSLLEINKGIIQRYFAYNSKNETIFDEIISPDYIDHGQSAYM
Ga0062594_1011188671	3300005093	Soil	MTYYNMDINESTSLLEINKGIIQRYFEAYNSKNETIFDEIIS
Ga0065704_102751222	3300005289	Switchgrass Rhizosphere	MEVYCIDMNTYNIISQVELNKTIINRYFEAYNNKNDSIFDEIIDSDYIDHGQSAYMGSP*
Ga0065712_102295492	3300005290	Miscanthus Rhizosphere	MDTNESISQVEINKGIIQRYFEAYNNKNEAIFDEIISPNYIDHGQSAYMG
Ga0066388_1033061902	3300005332	Tropical Forest Soil	MSQVVETNKTIIKRYFEAYNTKDEAIFDQIIAPDYIDHGQSAYMDSPGKGVAGDLR*
Ga0066388_1068964721	3300005332	Tropical Forest Soil	MSQVETNKAIINRYFEAYNTKNDSIFDEIIASDYIDHGQSAYMGSPGRGVAGATFSIH*
Ga0070680_1013618141	3300005336	Corn Rhizosphere	MTYYNMDINESTSLLEINKGIIQRYFEAYNSKNETIFDGIISPDY
Ga0070692_102689452	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MDTNESISQVEINKGIIQRYFEAYNNKNEAIFDEIISPNYIDHGQSA
Ga0070700_1010158092	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQS
Ga0070700_1013166571	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MNNNETMSQIEMNKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQS
Ga0070704_1013311891	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAY
Ga0066698_103835291	3300005558	Soil	MSRSTNDTVSQIETNKAIIKRYFEAYNNKDEAIFDEIIAPEYVDHGQSAYMGSPGRGVAGAKR
Ga0058697_102946822	3300005562	Agave	MNTNEIISQIEMNKTVIQRYFEAYNNKDEAIFDEIIAPEYVD
Ga0081538_100833195	3300005981	Tabebuia Heterophylla Rhizosphere	MYLHQNMNISDTMSSQIDLNKAIIQRYFGAYNNKNAAIF
Ga0066665_116814411	3300006796	Soil	MNSRAPPTNETMSQIEMNKAVIQRYFDAYNNKNEAIFDEII
Ga0075421_1014981222	3300006845	Populus Rhizosphere	MNTSEIISQIEMNKTVIQRYFEAYNNKDEAVFDEIIAP*
Ga0075421_1022221911	3300006845	Populus Rhizosphere	MNRAYYISMNTNETISQIEINKAIIQRYFEAYNNKNETIFDDIISPDY
Ga0075430_1009035332	3300006846	Populus Rhizosphere	MNRAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMGSPGRGV
Ga0075433_110872701	3300006852	Populus Rhizosphere	MNQAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDD
Ga0075433_116660423	3300006852	Populus Rhizosphere	MNTNDIMSQIEMNKAIIQRYFDAYNNKNETIFDEI
Ga0075425_1015161831	3300006854	Populus Rhizosphere	MNTSEIISQIEMNKTVIQRYFEAYNNKDEAVFDEIIAPEYVDHGQSAYMGSPG
Ga0075434_1006274621	3300006871	Populus Rhizosphere	MNTNDIMSQIEMNKAIIQRYFDAYNNKNETIFDEII
Ga0075434_1025446621	3300006871	Populus Rhizosphere	MSRSTNDTVSQIETNKAIIKRYFEAYNNKDEAIFDEIIAPEYVDHGQSAYMGSPG
Ga0079217_113367921	3300006876	Agricultural Soil	MSQIEMNKAIIQRYFDAYNNKNETIFDEIIFSDYIDHSQTAYLGSPGRGIDG
Ga0075429_1014728431	3300006880	Populus Rhizosphere	MNRAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSA
Ga0075435_1001887231	3300007076	Populus Rhizosphere	MNRAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIF
Ga0105098_105879891	3300009081	Freshwater Sediment	MNSNETMSQVETNKAVIQQYFEAYNTKNEAIFNEIIAPD*
Ga0075418_107553972	3300009100	Populus Rhizosphere	MDSSKLSSQVETNKGIIQRYFEAFNSKNEAIFDEIISHDYIDHGQSAYMQAPGSGIAGA
Ga0075418_111674422	3300009100	Populus Rhizosphere	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYM
Ga0114129_104548183	3300009147	Populus Rhizosphere	MSQIEKNKAVIKRYFEAYNNKDEAILDEIIDPEYVDHGQSAYMGSPGKGVAGAKHDL
Ga0114129_117602961	3300009147	Populus Rhizosphere	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMDSPGRG
Ga0114129_129258171	3300009147	Populus Rhizosphere	MNQAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDI
Ga0114129_129738551	3300009147	Populus Rhizosphere	MNRAYYISMNTNETISQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTD
Ga0111538_140394151	3300009156	Populus Rhizosphere	MSQIDLNKAIIQRYFEAYNSKNEAIFDDIISPDYIDN
Ga0105092_103794051	3300009157	Freshwater Sediment	MSQVEINKAIIQRYFEAYNNKNEAIFDEIIPPDY*
Ga0126313_102256431	3300009840	Serpentine Soil	MNINDTISQVETNKAIIQCYFEAYNNKNEAIFDEIISPDYIDHG
Ga0105074_10653421	3300010029	Groundwater Sand	MNTNETMSQIEINKAIIQRYFEAYNNKNATIFDDIISPDYTDHGQSAYMGSPGRGVTGAK
Ga0126305_106406691	3300010036	Serpentine Soil	MECVLHQHMNTNDTMSQIELNKTIIQHYFEAYNNKNEAIFDDIISPD
Ga0126304_100257344	3300010037	Serpentine Soil	MNINDTMSQIDLNKTIIQRYFEAYNNKNEAIFDDIISPDYI
Ga0126304_106911642	3300010037	Serpentine Soil	MKMDDTMSQVDLNKSIIQRYFEAYNTKNEAIFDDIISPDWSDHTGP
Ga0126309_100404163	3300010039	Serpentine Soil	MNTNDIMSQIEMNKAIIQRYFEAYNNKNETIFDEIISSDYIDHG*
Ga0126308_100933823	3300010040	Serpentine Soil	MSQIEMNKAIIQRYFDAYNNKNETIFDEIISSDYIDHGQTAYMGSPGRGIDGAKNDLR
Ga0126308_101601962	3300010040	Serpentine Soil	MKINDTMSQIELNKAIIQRYFEAYNNKNEAIFDEIISPDYV
Ga0126308_102769081	3300010040	Serpentine Soil	MNINNDTMSHIEVNKAIIQRYFEAYNNKNEAIFDDIISPD
Ga0126308_109537152	3300010040	Serpentine Soil	MNINDMISQIELNKTIIQRYFEAYNNKNEAILDDIISPDYID*
Ga0126314_104294832	3300010042	Serpentine Soil	MKINDTMSQIELNKAIIQRYFEAYNNKNEAIFDEIISPDYVD
Ga0126314_112138641	3300010042	Serpentine Soil	MSQIEMNKAIIQRYFDAYNNKNETIFDEIISSDYIDHGQTAYM
Ga0126310_102017673	3300010044	Serpentine Soil	MNINETMSQVEINKTIIQRYFEAYNNKNEAIFDDKISPDYIDHGQSAYMGSPGR
Ga0126384_110857241	3300010046	Tropical Forest Soil	MSQVEINKAIIQRYFEAYKNKNEAIFDEIISTDYIDHGQTSYMGSPG*
Ga0126384_111153151	3300010046	Tropical Forest Soil	MSQVETNKAIIKLYFEAYNTKNEAIFDEIIAPDYIDHGQS*
Ga0126373_132424961	3300010048	Tropical Forest Soil	MNAKDSMSHVVETNKTIIKRYFEAYNTKNEAIFDEIIAPD
Ga0126373_132638201	3300010048	Tropical Forest Soil	MNTSGSMSQVVETNKTIIKHYFEAYNTKNEAIFDEIIAPD*
Ga0126306_100024129	3300010166	Serpentine Soil	MNTNDIMSQIEMNKATIQRYFDAYNNKNETKEYY*
Ga0126306_104946293	3300010166	Serpentine Soil	MSQVEINKAIIQRYFEAYNNKNEAIFDEIISPDYI
Ga0126306_105397472	3300010166	Serpentine Soil	MNTNDIMSRIELNKAIIQRYFDAYNNKNETIFDEIIS
Ga0134062_107480811	3300010337	Grasslands Soil	MSQIEMNKAVIQRYFDAYNNKNEAIFDEIIAPECSPG
Ga0126377_104851802	3300010362	Tropical Forest Soil	MSINEIMSQIEKNKVVIKRYFEAYNNKDEAIFDEIISSDY
Ga0126379_121033031	3300010366	Tropical Forest Soil	MNTSGSMSQVLETNKTIIKHYFEAYNTKNEAIFDEIIAPD*
Ga0126381_1000857475	3300010376	Tropical Forest Soil	MNCNVIQLSQVETIKAIINRYFEAYNTKNAIFDEIIT
Ga0126381_1006835262	3300010376	Tropical Forest Soil	MNTDDTMSQVETNKAIINRYFEAYNTKNEAIFDEIIAP
Ga0126381_1043063903	3300010376	Tropical Forest Soil	MNTDDTMSQVETNKAIINRYFEAYNTKNDAIFDEIIAPAYI
Ga0137392_113868852	3300011269	Vadose Zone Soil	MNTNDVMSQVEFNKTIIQRYFEAYNNKNEAIFDEIIAPDYIDDGQS
Ga0157330_10070663	3300012514	Soil	MNTNDIMSQIEMNKAIIQRYFDAYNNKNETIFDEIISSD
Ga0157288_104036012	3300012901	Soil	MSQIEKNKAVIKRYFEAYNNKDEGILDEIIDPEYVDHGQSAYMGSPGKGVAGAKHDLE
Ga0157282_100923181	3300012904	Soil	MSQIEKNKAVIKRYFEAYNNKDEGILDEIIDPEYVDHGQSAYMG
Ga0164303_101262532	3300012957	Soil	MNSNDIISQIEINKAIIQRYFEAYNNKDETIFDEIIATDYIDHGQSAYM
Ga0126369_105890121	3300012971	Tropical Forest Soil	MNTDDTMSQVETNKSIINRYFEAYNTKNDAIFNSPRLHRP
Ga0126369_126728371	3300012971	Tropical Forest Soil	MNTDDTMSQVETNKSIINRYFEAYNTKNDAIFNSPRL
Ga0157375_125598161	3300013308	Miscanthus Rhizosphere	MDTNESISQVEINKGIIQRYFEAYNNKNEAIFDEIISPNYIDHGQSAYM
Ga0075331_11734491	3300014310	Natural And Restored Wetlands	MNANDMSEIGMNKDIVQRYFEAYNNKNETILDEIISSDYIDHGQSAYM
Ga0173480_111586331	3300015200	Soil	MSQIEMNKAVIQRYFDAYNNKNEAIFDEIIAPLL*
Ga0184605_100029201	3300018027	Groundwater Sediment	MDTNESISQVEINKGIIQRYFEAYNNKNETIFDEII
Ga0184619_104278272	3300018061	Groundwater Sediment	MSQIQLNKEIIQRYFEAYNNKEEAIFDEIIAPDYID
Ga0184635_102361491	3300018072	Groundwater Sediment	MNRAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMGSP
Ga0184635_102461771	3300018072	Groundwater Sediment	MNTNETMSQIDINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMGSP
Ga0190268_113961921	3300018466	Soil	MSQVETNKAVIQQYFEAYNTKNEAIFNEIIAQDYIDHGQTAY
Ga0190268_123794221	3300018466	Soil	MNELSAMNANDTMSKIEMNKSIIQRYFDAYNNKNETIFD
Ga0190270_123799001	3300018469	Soil	MNELSAMNTNDTMSQIEMNKSIIQRYFDAYNNKNETILDEIISSDYIDHGQSAYMGSPGRGID
Ga0173482_101474831	3300019361	Soil	MSTNETMSQIEKNKAVIKRYFEAYNNKDEGILDEIIDPEYVDHGQSA
Ga0190267_109247441	3300019767	Soil	MNTSNTMSQVEINKAIIQRYFEAYNNKNEAIFDEIIPPDY
Ga0190267_111782632	3300019767	Soil	MNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDI
Ga0193747_10697041	3300019885	Soil	MNTNDTMSQVEINKAIIQRYFEAYNNKNEAIFDAIIA
Ga0193711_10251642	3300019997	Soil	MDNNESISQVEINKGIIQRYFEAYNNKNEMIFDEIISPD
Ga0193739_11142761	3300020003	Soil	MNTNDTTSQIEINKAIIQRYFEAYNNKNETIFDDIISP
Ga0193738_10048906	3300020020	Soil	MNNNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGSKE
Ga0126371_118078711	3300021560	Tropical Forest Soil	LKIKYIVLNTNDIISQVEINKAIIQRYFEAYKNKNEAIFDEIISTDYIDHGQTSYMGSPG
Ga0210087_10932521	3300025559	Natural And Restored Wetlands	MNANDMSQIEMNKDIVQRYFEAYNNKNETILDEIISSDYIDHGQSAYMGSPGRGIGGA
Ga0207685_107429352	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSTNDTVSQIETNKAIIKRYFEAYNNKDEAIFDEIIAPEYVDHGQSAYMG
Ga0207708_112967012	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MNNNETMSQIEMNKAIIQRYFEAYNNKNETIFDDIISPDYTDHG
Ga0209874_11229072	3300027577	Groundwater Sand	MSQVETNKAVIQRYFEAYTTKNETIFDEIIAPDYIDHGQTAFMGSPGRGVT
Ga0214469_10896892	3300027636	Soil	VDKSETISQVEANKAVIQRYFEAYNNKNEAIFDEIIYQNCVDHGQSAYM
Ga0214468_10617782	3300027647	Soil	MNANDMSQIEMNKAIVQRYFEAYNNKNETILDEIISSDYIYHGQSAY
Ga0209868_10216591	3300027947	Groundwater Sand	MNRAYYISMNTNETMSQIEINKAIIQRYFEAYNNKNETIFDDIISPDYTDHGQSAYMGSPGRGVTG
Ga0299914_106394091	3300031228	Soil	MNANDMSQIEMNKAIVQRYFEAYNNKNETILDEIISSDYIDHGQSA
Ga0308194_100619274	3300031421	Soil	EITMNINNTMSQVEINKAIIQRYFEAYNNKNEIIFDEIIAPD
Ga0307410_105842592	3300031852	Rhizosphere	MNINDTMSQIELNKAIIQRYFEAYNNKNEAIFDDIISPDYIDYGQSAYMTSSIL
Ga0307412_102248783	3300031911	Rhizosphere	MKINDTMSQVELNKAIIQRYFEAYNSKNEAIFDEEIGSGS
Ga0307416_1000305421	3300032002	Rhizosphere	VNEVYYISMNINDTMSQVELNKTIIQRYFEAYNNKNEAIFDDIISPD
Ga0307416_1002389102	3300032002	Rhizosphere	MECVLHQHMNINDTMSQVELNKTIIQRYFEAYNNKNEAIFDDIISPDY
Ga0307415_1010092731	3300032126	Rhizosphere	MECILHQHMNINDTMSQVELNKAIIQRYFEAYNNKNEAIFDDIISPDY
Ga0334961_031977_3_116	3300034143	Sub-Biocrust Soil	MNISDTMSQVELNKAIIQRYFEAYNTKNEAIFDDIISP
Ga0364936_091891_1_105	3300034773	Sediment	MSQVETNTAVIQRYFEAYNTKNETIFDEIIAPDYI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088584

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences