Metagenome Family F088571

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088571
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	53 residues
Representative Sequence	MTCPNCRGARLVQIGLTLKERQVTMHSCSRCDTRWWDSDGEMVGLTNVLELATVRR
Number of Associated Samples	76
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.11 %
% of genes near scaffold ends (potentially truncated)	12.84 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (33.945 % of family members)
Environment Ontology (ENVO)	Unclassified (49.541 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.550 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.52% β-sheet: 29.76% Coil/Unstructured: 60.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02517	Rce1-like	61.47
PF10131	PTPS_related	7.34
PF06480	FtsH_ext	1.83
PF12005	DUF3499	1.83
PF05221	AdoHcyase	0.92
PF02366	PMT	0.92
PF04138	GtrA	0.92
PF02879	PGM_PMM_II	0.92
PF14031	D-ser_dehydrat	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	61.47
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	61.47
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.92
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.92
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	91.74 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	84.40 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	34.86 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	24.77 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	33.94 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	18.35 %
Unclassified	root	N/A	2.75 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.03 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	11.01 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	3.67 %
Unclassified	root	N/A	2.75 %
Actinobacteria bacterium IMCC26207	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	0.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.03 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	3.67 %
Unclassified	root	N/A	2.75 %
Acidithrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix	0.92 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	0.92 %
Actinobacteria bacterium IMCC26207	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	0.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.03 %
Ilumatobacter coccineus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	2.75 %
Unclassified	root	N/A	2.75 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	0.92 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	0.92 %
Actinobacteria bacterium IMCC26207	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	0.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.03 %
Ilumatobacter coccineus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	2.75 %
Unclassified	root	N/A	2.75 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	0.92 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	0.92 %
Actinobacteria bacterium IMCC26207	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	0.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11994141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300001661\|JGI12053J15887_10131517	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1330	Open in IMG/M
3300002568\|C688J35102_120236666	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300003312\|P12013IDBA_1120895	Not Available	535	Open in IMG/M
3300004081\|Ga0063454_100216125	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300004081\|Ga0063454_100838857	All Organisms → cellular organisms → Bacteria → Terrabacteria group	716	Open in IMG/M
3300004081\|Ga0063454_100857284	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300005093\|Ga0062594_101559824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300005093\|Ga0062594_102413821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300005167\|Ga0066672_10323394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1005	Open in IMG/M
3300005167\|Ga0066672_10567721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	735	Open in IMG/M
3300005167\|Ga0066672_10962173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300005171\|Ga0066677_10570348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	645	Open in IMG/M
3300005174\|Ga0066680_10368168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	915	Open in IMG/M
3300005177\|Ga0066690_11040010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300005179\|Ga0066684_10483075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	832	Open in IMG/M
3300005184\|Ga0066671_10057164	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300005294\|Ga0065705_10283805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	1096	Open in IMG/M
3300005355\|Ga0070671_101249522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	654	Open in IMG/M
3300005435\|Ga0070714_100854033	All Organisms → cellular organisms → Bacteria → Terrabacteria group	883	Open in IMG/M
3300005436\|Ga0070713_100969239	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005447\|Ga0066689_10414023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300005454\|Ga0066687_10246232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	995	Open in IMG/M
3300005468\|Ga0070707_100783941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300005529\|Ga0070741_10001591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67689	Open in IMG/M
3300005557\|Ga0066704_10526991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300005560\|Ga0066670_10380031	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300005561\|Ga0066699_10049955	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2562	Open in IMG/M
3300005561\|Ga0066699_11238569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300005569\|Ga0066705_10293379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	1031	Open in IMG/M
3300005575\|Ga0066702_10124153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1502	Open in IMG/M
3300005575\|Ga0066702_10187238	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1247	Open in IMG/M
3300005576\|Ga0066708_10375640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	913	Open in IMG/M
3300005598\|Ga0066706_10669216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	824	Open in IMG/M
3300006028\|Ga0070717_11869389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300006032\|Ga0066696_10454831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	839	Open in IMG/M
3300006032\|Ga0066696_11027099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300006032\|Ga0066696_11028867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	524	Open in IMG/M
3300006034\|Ga0066656_10804306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	602	Open in IMG/M
3300006797\|Ga0066659_11502936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300006800\|Ga0066660_10085473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2188	Open in IMG/M
3300006800\|Ga0066660_10299271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1283	Open in IMG/M
3300006800\|Ga0066660_10477571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300006800\|Ga0066660_11176563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	603	Open in IMG/M
3300006854\|Ga0075425_100015639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	8203	Open in IMG/M
3300006854\|Ga0075425_102123790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300009012\|Ga0066710_100044380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	5412	Open in IMG/M
3300009012\|Ga0066710_100104898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3795	Open in IMG/M
3300009012\|Ga0066710_102870761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300010303\|Ga0134082_10442416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300012198\|Ga0137364_10628398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300012208\|Ga0137376_10909453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	755	Open in IMG/M
3300012208\|Ga0137376_11702209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	521	Open in IMG/M
3300012285\|Ga0137370_10445023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	789	Open in IMG/M
3300012357\|Ga0137384_10994648	Not Available	674	Open in IMG/M
3300012469\|Ga0150984_113757606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300012582\|Ga0137358_10790568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300012951\|Ga0164300_10838566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	574	Open in IMG/M
3300012975\|Ga0134110_10279298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	717	Open in IMG/M
3300015371\|Ga0132258_10649576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2653	Open in IMG/M
3300015371\|Ga0132258_12525534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1285	Open in IMG/M
3300015371\|Ga0132258_12539043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1281	Open in IMG/M
3300015372\|Ga0132256_103537022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300015373\|Ga0132257_102708217	All Organisms → cellular organisms → Bacteria → Terrabacteria group	646	Open in IMG/M
3300015374\|Ga0132255_102401597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	805	Open in IMG/M
3300018054\|Ga0184621_10098121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300018431\|Ga0066655_10900359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300018431\|Ga0066655_11431985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300018433\|Ga0066667_10871467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	772	Open in IMG/M
3300018468\|Ga0066662_10013412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4359	Open in IMG/M
3300018468\|Ga0066662_10499415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1107	Open in IMG/M
3300018468\|Ga0066662_10950759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300018468\|Ga0066662_11654454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	669	Open in IMG/M
3300018468\|Ga0066662_12434898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300018482\|Ga0066669_10791742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300021080\|Ga0210382_10190571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	889	Open in IMG/M
3300021362\|Ga0213882_10068223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1419	Open in IMG/M
3300021372\|Ga0213877_10068501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1044	Open in IMG/M
3300021374\|Ga0213881_10030311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2264	Open in IMG/M
3300021439\|Ga0213879_10184807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300021444\|Ga0213878_10044852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1714	Open in IMG/M
3300021444\|Ga0213878_10092510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1221	Open in IMG/M
3300021444\|Ga0213878_10522924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300021559\|Ga0210409_10470892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1118	Open in IMG/M
3300025910\|Ga0207684_10072730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2920	Open in IMG/M
3300025929\|Ga0207664_10955054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	769	Open in IMG/M
3300025930\|Ga0207701_10707314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	853	Open in IMG/M
3300025939\|Ga0207665_11293368	All Organisms → cellular organisms → Bacteria → Terrabacteria group	581	Open in IMG/M
3300026312\|Ga0209153_1027341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1924	Open in IMG/M
3300026316\|Ga0209155_1288685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300026328\|Ga0209802_1321082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300026527\|Ga0209059_1156052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	826	Open in IMG/M
3300026527\|Ga0209059_1212559	All Organisms → cellular organisms → Bacteria → Terrabacteria group	651	Open in IMG/M
3300026550\|Ga0209474_10188946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1320	Open in IMG/M
3300026550\|Ga0209474_10366607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300026550\|Ga0209474_10649608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	543	Open in IMG/M
3300026552\|Ga0209577_10105345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2279	Open in IMG/M
3300026552\|Ga0209577_10824286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300028720\|Ga0307317_10339495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300028828\|Ga0307312_10856095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300031753\|Ga0307477_10086510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2175	Open in IMG/M
3300031962\|Ga0307479_10026520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5503	Open in IMG/M
3300031962\|Ga0307479_11015848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	798	Open in IMG/M
3300031962\|Ga0307479_11619676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	602	Open in IMG/M
3300032180\|Ga0307471_102659872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300032180\|Ga0307471_102663115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300032205\|Ga0307472_101612691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300034268\|Ga0372943_0623329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	709	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.99%
Plants	Host-Associated → Plants	9.17%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.59%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.31%
Loam	Environmental → Terrestrial → Soil → Loam	12.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	45.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	33.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.01%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.50%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_119941412	3300000891	Soil	MECPSCSSSRLVEIDITLQERRVTMHSCSRCETRWWDQEGEPVGLGHVLELATVRR*
JGI12053J15887_101315172	3300001661	Forest Soil	MLCPSCSSGRLVEIDITLQERRVTMHSCSRCETRWWDQEGEPVGLRHVLDLATVRR*
C688J35102_1202366661	3300002568	Soil	MMCPNCRGARLVQIGLTLKERNVTMSSCSRCDTRWWDSDGESVGLTNVLELATVRR*
P12013IDBA_11208952	3300003312	Ore Pile And Mine Drainage Contaminated Soil	VEIELTLKERRVTLHSCSRCETKWWDQDGERVDAARVLDLARK*
Ga0063454_1002161252	3300004081	Soil	MTCPNCRGARLVQIGLTLKERNVTMSSCSRCDTRWWDSDGESVGLTNVLELATVRR*
Ga0063454_1008388572	3300004081	Soil	MTCPNCRGARLVQIGLTLKERKVTMHACSKCDTRWWDSDGEQVGLTNVLEMATVRR*
Ga0063454_1008572841	3300004081	Soil	MTCPNCRNARLVQIGLTLKERNVTMHSCSRCDTRWWDSDGELVALTNVLELATVRR*
Ga0062594_1015598242	3300005093	Soil	MTCPKCRARLVEIGLTIKERSVTMHSCSRCDTRWWHSDGERVGLTNVLELATVSK*
Ga0062594_1024138211	3300005093	Soil	MTCPNCRGARLVQIGMTLKERTVTMHSCSRCDTRWWDSDGEKVGLPNVLELATVSR*
Ga0066672_103233942	3300005167	Soil	MTCPNCRGARLVQIGLTIKDREVTMHSCSRCDTRWWHSDGERLGLTNVLELATVQR*
Ga0066672_105677212	3300005167	Soil	MACPVCRARQLVEISVTLKERKVTLHSCSACDTRWWESDGERLALPALLELAGRSD*
Ga0066672_109621732	3300005167	Soil	MTCPNCRAARLVEIDLRLRERRVTLHACSRCDVRWWDDDGERVGLHQILELATVRR*
Ga0066677_105703481	3300005171	Soil	GVAAMTCPNCRGARLVQIGLRLKERKVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR
Ga0066680_103681681	3300005174	Soil	MLCPSCSSSRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLRHVLELATVRR*
Ga0066690_110400102	3300005177	Soil	MTCPNCRGARLVQIGLRLKERKVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR*
Ga0066684_104830751	3300005179	Soil	MTCPNCRGARLVQIGLTIKDREVTMHSCSRCDTRWWHSDGERLGLTNVLELATVQR
Ga0066671_100571642	3300005184	Soil	MTCPNCQGARLVQIGLRLKERKVTMHSCSRCDTRWWDAEGERLGLTNVLELATVHR*
Ga0065705_102838052	3300005294	Switchgrass Rhizosphere	VECPSCSSKRLVEIDITLQERRVTMHSCSRCETRWWDREGEPIGLGHVLELATVRR*
Ga0070671_1012495222	3300005355	Switchgrass Rhizosphere	MTCPNCRGARLVQIGMTLKERTVTMSSCSKCDTRWWDSDGERVGLPNV
Ga0070714_1008540331	3300005435	Agricultural Soil	MTCPNCRGGRLVQVGLTLKERSVTMHSCSRCDTRWWDSDGEQVGLTDVLEMATVRR*
Ga0070713_1009692392	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VQIGLTIKERNVTMSSCSRCDTRWWDSDGESLGLTNVLELATVRR*
Ga0066689_104140232	3300005447	Soil	MTCPNCRGSRLVEIDITLKERCVTMHSCNGCDTRWWDREGERVGLTHVLELATVRR*
Ga0066687_102462321	3300005454	Soil	MTCPNCRGARLVQIGLKLKERKVTMHSCSRCDTRWWDAEGERLGLTNVLELATVHR*
Ga0070707_1007839411	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLCPSCSSSRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLRHVLDLATVRR*
Ga0070741_1000159147	3300005529	Surface Soil	MTCPNCRGARLVQIGLTLKERKVTMHSCSKCDTRWWDSDGEQVGLTNVLELATVQK*
Ga0066704_105269912	3300005557	Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLRHVLELATVRR*
Ga0066670_103800312	3300005560	Soil	VQIGLTLKERNVTMHSCSKCDTRWWDSDGEHVGLSNVLELATVRP*
Ga0066699_100499552	3300005561	Soil	RGARLVQIGLTIKDREVTMHSCSRCDTRWWHSDGERLGLTNVLELATVQR*
Ga0066699_112385691	3300005561	Soil	EIDITLRERRVTMHSCSRCETRWWDQEGEPVGLNHVLELATVRR*
Ga0066705_102933792	3300005569	Soil	MTCPNCRGARLVRIGLTLKERQVTMHSCSRCDTRWWDTDGERVGLTNVLELATVRR*
Ga0066702_101241532	3300005575	Soil	MTCPNCRGARLVQIGLRLKERRVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR*
Ga0066702_101872381	3300005575	Soil	MTCPNCRGARLVQVGLTLKERKVTMHSCSRCDTRWWDSDGQQVGLTDVLELATVKR*
Ga0066708_103756402	3300005576	Soil	MTCPNCRGARLVQIGLTLKERKVTMHSCSRCDTRWWDSDGEHVGLTNVLELATVKR*
Ga0066706_106692162	3300005598	Soil	MRCPNCRNARLVEIDLTLKDRRVTMHACSRCDVRWWDDGGERVGLHQVLELAAVRR*
Ga0070717_118693891	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTCPNCRGARLVQIGLTLKERQVTMHSCSRCDTRWWDSDGEMVGLTNVLELATVRR*
Ga0066696_104548312	3300006032	Soil	MTCPNCRTARLVEIGITLKERRVTMHSCSRCDTRWWDNDGENVGLSHVLDLATVRR*
Ga0066696_110270991	3300006032	Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLNHVLELATVRR*
Ga0066696_110288671	3300006032	Soil	MTCPNCRGSRLVEIDITLKERNVTMHSCSRCDTRWWDREGERVGLTHVIELATVTR*
Ga0066656_108043061	3300006034	Soil	VQIGLTLKERKVTMHSCSRCDTRWWDDEGERVGLTNVLDMATVRR*
Ga0066659_115029362	3300006797	Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQDGEPVGLNHVLELATVRR*
Ga0066660_100854732	3300006800	Soil	VQIGLTIKDREVTMHSCSRCDTRWWHSDGERLGLTNVLELATVQR*
Ga0066660_102992712	3300006800	Soil	MTCPNCRGARLVQIGLTLKERKVTMHACSRCDTRWWDSDGERLGLPNVLELATVDR*
Ga0066660_104775711	3300006800	Soil	MCPNCRGSRLVESDITLRERTITMHSCSRCETRWWDREGEPVGLSHVLELATVHR*
Ga0066660_111765632	3300006800	Soil	MTCPNCRGARLVQIGLRLKERMVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR*
Ga0075425_1000156393	3300006854	Populus Rhizosphere	MGEGVAAMTCPNCRNARLVQIGLTIKERQVTMHSCSRCDTRWWDSDGEQLRLTNVLEMATVRR*
Ga0075425_1021237901	3300006854	Populus Rhizosphere	MTCPNCRGARLVQIGLTIKECKVTMHSCSRCDTRWWDSDGEQVGLTNVLEMATVRR*
Ga0066710_1000443804	3300009012	Grasslands Soil	MTCPNCRGSRLVEIDITLKERCVTMHSCNGCDTRWWDREGERVGLTHVLELATVRR
Ga0066710_1001048982	3300009012	Grasslands Soil	MRCPNCRNARLVEIDLTLKDRRVTMHACSRCDVRWWDDGGERVGLHQVLELAAVRR
Ga0066710_1028707612	3300009012	Grasslands Soil	MTCPNCRGSRLVEIDITLKERTLTMHSCSRCETRWWDREGEPVGLSHVLELATVRR
Ga0134082_104424161	3300010303	Grasslands Soil	VQIGLTLKERTVTMHSCSRCDTRWWDSDGERVGLTNVLELATVQR*
Ga0137364_106283982	3300012198	Vadose Zone Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLGHVLELATVRR*
Ga0137376_109094532	3300012208	Vadose Zone Soil	VQIGLRLKERRVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR*
Ga0137376_117022091	3300012208	Vadose Zone Soil	GGVAAMTCPNCRGARLVQIGLTLKERNVTMHSCSRCDTRWWDSDGERVGLTNVLELATVQR*
Ga0137370_104450231	3300012285	Vadose Zone Soil	VQIGLTLKERTVTMHSCSRCDTRWWDFDGERVGLTNVLELATVQR*
Ga0137384_109946481	3300012357	Vadose Zone Soil	MLQQRRVVMHSCSRCDTRWWDSEGDLVPLDDVLQLAAPPRR*
Ga0150984_1137576061	3300012469	Avena Fatua Rhizosphere	VQIGLTLKERKVTMHACSKCDTRWWDSDGEQVGLTNVLEMATVRR*
Ga0137358_107905682	3300012582	Vadose Zone Soil	MNCPNCRGGRLVQIGLTLKERKVTMKACSRCDTRWWDSDGKPVGLTNVLELATVRR*
Ga0164300_108385662	3300012951	Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLNHVLDLATVRR*
Ga0134110_102792982	3300012975	Grasslands Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLNH
Ga0132258_106495764	3300015371	Arabidopsis Rhizosphere	MTLKERTVTMSSCSKCDTRWWDSDGERVGLPNVLELATVSK*
Ga0132258_125255343	3300015371	Arabidopsis Rhizosphere	MVCPNCRGGRLVQIGLTLKERNVTMHSCSRCDTRWWDSDGEHVGLTNVLELATVKR*
Ga0132258_125390432	3300015371	Arabidopsis Rhizosphere	MTIKDRTVTMSSCSRCDTRSWDTDGEKVGLTNVLELATVAK*
Ga0132256_1035370222	3300015372	Arabidopsis Rhizosphere	MTCPNCRGARLVKIEMTIKDRTVTMSSCSRCDTRSWDTDGEKVGLTNVLELATVAK*
Ga0132257_1027082172	3300015373	Arabidopsis Rhizosphere	NCRGARLVKIEMTIKDRTVTMSSCSRCDTRSWDTDGEKVGLNNVLELATVAK*
Ga0132255_1024015971	3300015374	Arabidopsis Rhizosphere	MTIKDRTVTMSSCSRCDTRSWDTDGEKVGLNNVLELATVAK*
Ga0184621_100981211	3300018054	Groundwater Sediment	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLNHVLELATVRR
Ga0066655_109003591	3300018431	Grasslands Soil	VQIGLTLKERNVTMHSCSKCDTRWWDSDGEQVGLTNVLEMATVRR
Ga0066655_114319852	3300018431	Grasslands Soil	MTCPNCRGARLVQIGLTLKERKVTMHACSKCDTRWWDSDGEQVGLTNVLEMATVRR
Ga0066667_108714672	3300018433	Grasslands Soil	MKCPNCRAARLVQIGLTIKERQVTMHSCSRCDTRWWDSDGEQVGLTNVLEMATVRR
Ga0066662_100134123	3300018468	Grasslands Soil	MTCPNCRGARLVQVGLTLKERKVTMHSCSRCDTRWWDSDGQQVGLTDVLELATVKR
Ga0066662_104994152	3300018468	Grasslands Soil	MTCPNCRGARLVQIGLKLKERNVTMHSCSRCDTRWWDAEGERLGLPNVLEMATVRR
Ga0066662_109507592	3300018468	Grasslands Soil	MTCPNCRGARLVQIGLTLKERKVTMHACSRCDTRWWDSDGERVGLTNVLELATVTR
Ga0066662_116544542	3300018468	Grasslands Soil	MKCPNCRGARLVQIGLTIKERAVTMHSCSRCDTRWWDSDGERLGLPNVLELATVRR
Ga0066662_124348982	3300018468	Grasslands Soil	RTGITLKEGQVTMHACSKCETRWWDNEGERVGLSHVLDLAATRR
Ga0066669_107917421	3300018482	Grasslands Soil	MTCPNCRGSRLVEIDITLKERSVTMHSCNGCDTRWWDREGERVGLPHVLELATVRR
Ga0210382_101905711	3300021080	Groundwater Sediment	MTCPNCRLARLVEIDLTLKDRRVTMHACSRCDIRWWDDAGEQVGLHKVLELAAVRR
Ga0213882_100682232	3300021362	Exposed Rock	MTCPNCQGARLVQIGLTLKERKVTMHSCSKCDTRWWDNEGQRVGLTNVLEMATVRR
Ga0213877_100685012	3300021372	Bulk Soil	VQIGLTLKERKVTMHSCSRCDTRWWDSDGQLVGLTNVLELATVYR
Ga0213881_100303112	3300021374	Exposed Rock	MTCPNCRGARLVQIDLTLKERKVTMHSCSKCDTRWWDNEGERLALTNVLEMATVRR
Ga0213879_101848072	3300021439	Bulk Soil	VQIGLTLKERKVTMHSCSRCDTRWWDSDGHLVGLTNVLELATVYR
Ga0213878_100448522	3300021444	Bulk Soil	MLKERKVTMHSCSRCDTRWWDSEGELVGLTNVLELATVHR
Ga0213878_100925101	3300021444	Bulk Soil	MTCPKCRGARLVQIGLTLKERKVTMHSCSRCDSRWWDSDGERVGLTNVLELATVKR
Ga0213878_105229242	3300021444	Bulk Soil	MTCPNCRGARLVQIGLTLKERRVTMHSCSRCDTRWWDSEGELVGLTNVLDLATVRR
Ga0210409_104708922	3300021559	Soil	MTCPNCNASRLVEIGLTLKERQVTMHSCSRCDTRWWDTEGERVGLTNVLELATVSR
Ga0207684_100727304	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLCPSCSSSRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLRHVLDLATVRR
Ga0207664_109550542	3300025929	Agricultural Soil	MTCPNCRGGRLVQVGLTLKERSVTMHSCSRCDTRWWDSDGEQVGLTDVLEMATVRR
Ga0207701_107073142	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTCPNCRGARLVQIGMTLKERTVTMSSCSKCDTRWWDSDGQRVGLPNVLELATVSK
Ga0207665_112933682	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LKERSVTMHSCSRCDTRWWDSDGEQVGLTDVLEMATVRR
Ga0209153_10273412	3300026312	Soil	MTCPNCQGARLVQIGLRLKERKVTMHSCSRCDTRWWDAEGERLGLTNVLELATVHR
Ga0209155_12886851	3300026316	Soil	VQIGLTIKERQVTMHSCSRCDTRWWDSDGEQVGLTNVLEMATVRR
Ga0209802_13210822	3300026328	Soil	MLCPSCSSSRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLRHVLELATVRR
Ga0209059_11560522	3300026527	Soil	MTCPNCRGARLVQIGLRLKERRVTMHSCSRCDTRWWDSDGKRLGLTNVLDLATVRR
Ga0209059_12125592	3300026527	Soil	MTCPNCRGARLVQIGLTIKDREVTMHSCSRCDTHWWHSDGERLGLTNVLELATVQR
Ga0209474_101889463	3300026550	Soil	VQIGLTLKERNVTMHSCSKCDTRWWDSDGEHVGLSNVLELATVRR
Ga0209474_103666071	3300026550	Soil	MTCPNCRTARLVEIGITLKERRVTMHSCSRCDTRWWDNDGENVGLSHVLDLATVRR
Ga0209474_106496081	3300026550	Soil	MTCPNCRGSRLVEIDITLKERNVTMHSCSRCDTRWWDREGERVGLTHVIELATVTR
Ga0209577_101053451	3300026552	Soil	MTCPNCRAARLVEIDLRLRERRVTLHACSRCDVRWWDDDGERVGLHQILELATVRR
Ga0209577_108242861	3300026552	Soil	VEIGITLKERRVTMHSCSRCDTRWWDNDGEHVGLSHVLDLATVRR
Ga0307317_103394952	3300028720	Soil	MECPSCSSSRLVEIDITLQERRVTMHSCSRCETRWWDQEGEPVGLGHVLELATVRR
Ga0307312_108560951	3300028828	Soil	MLCPSCSSGRLVEIDITLRERRVTMHSCSRCETRWWDQEGEPVGLGHVLDLATVRR
Ga0307477_100865102	3300031753	Hardwood Forest Soil	MTCPNCQAARLVRIGLTLKERKVTMHSCSRCDTRWWDTDGERVGLTNVLDLATVRR
Ga0307479_100265204	3300031962	Hardwood Forest Soil	MTCPNCRGARLVQIGLMLNERKVTMHSCSRCDTRWWDSDGERLGLTNVLDMATVRR
Ga0307479_110158482	3300031962	Hardwood Forest Soil	MKCPNCRHARLVQIALRLKERQVTMHSCSRCDTRWWDSDGERVGLTNVLELATVRR
Ga0307479_116196761	3300031962	Hardwood Forest Soil	MTCPNCRAARLVQIGLMLKERKVTMHSCSRCDTRWWDSDGERLGLTNVLDMATVRR
Ga0307471_1026598721	3300032180	Hardwood Forest Soil	VQIGLTLKERSVTMHSCSRCDTRWWDSDGENVGLTNVLELATVRR
Ga0307471_1026631152	3300032180	Hardwood Forest Soil	MTCPNCRGARLVQIGLTLKERKVTMHACSRCDTRWWDSDGEHVGLTNVLEMATVRR
Ga0307472_1016126912	3300032205	Hardwood Forest Soil	MTCPNCRGARLVQIGMKLKERDVTMHSCSRCDTRWWDAEGERLGLTNVLELASVSK
Ga0372943_0412328_453_578	3300034268	Soil	MTLKERTVTMHSCSKCDTRWWDSDGERLGLPNVLELATVTK
Ga0372943_0623329_359_529	3300034268	Soil	MKCPNCRGARLVQIGLTIKERAVTMHSCSRCDTRWWDSDGERVGLPNVLELATVRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088571

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences