NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088570

Metagenome / Metatranscriptome Family F088570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088570
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 40 residues
Representative Sequence MGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Number of Associated Samples 79
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 6.42 %
% of genes near scaffold ends (potentially truncated) 45.87 %
% of genes from short scaffolds (< 2000 bps) 69.72 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(45.872 % of family members)
Environment Ontology (ENVO) Unclassified
(41.284 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(45.872 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.44%    β-sheet: 0.00%    Coil/Unstructured: 80.56%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF16861Carbam_trans_C 30.28
PF13692Glyco_trans_1_4 12.84
PF13579Glyco_trans_4_4 10.09
PF01370Epimerase 8.26
PF02543Carbam_trans_N 6.42
PF00733Asn_synthase 1.83
PF13537GATase_7 1.83
PF01381HTH_3 0.92
PF01494FAD_binding_3 0.92
PF02698DUF218 0.92
PF00953Glycos_transf_4 0.92
PF01841Transglut_core 0.92
PF13439Glyco_transf_4 0.92
PF15902Sortilin-Vps10 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG2192Predicted carbamoyl transferase, NodU familyGeneral function prediction only [R] 6.42
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.83
COG0472UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferaseCell wall/membrane/envelope biogenesis [M] 0.92
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.92
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.92
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.92
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.92
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.92

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001154|JGI12636J13339_1029984All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300001593|JGI12635J15846_10005238All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia11209Open in IMG/M
3300002245|JGIcombinedJ26739_100009328All Organisms → cellular organisms → Bacteria7900Open in IMG/M
3300002557|JGI25381J37097_1052735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales662Open in IMG/M
3300002914|JGI25617J43924_10019868All Organisms → cellular organisms → Bacteria → Proteobacteria2313Open in IMG/M
3300005552|Ga0066701_10354535All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300005555|Ga0066692_10017458All Organisms → cellular organisms → Bacteria3568Open in IMG/M
3300005557|Ga0066704_10030774All Organisms → cellular organisms → Bacteria3272Open in IMG/M
3300005557|Ga0066704_10525977All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300005569|Ga0066705_10678156All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300005574|Ga0066694_10182660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales995Open in IMG/M
3300005586|Ga0066691_10112366All Organisms → cellular organisms → Bacteria1540Open in IMG/M
3300005586|Ga0066691_10604831All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300006031|Ga0066651_10000878All Organisms → cellular organisms → Bacteria9805Open in IMG/M
3300006041|Ga0075023_100425203All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300006086|Ga0075019_10104265All Organisms → cellular organisms → Bacteria1632Open in IMG/M
3300006800|Ga0066660_10000003All Organisms → cellular organisms → Bacteria56745Open in IMG/M
3300007255|Ga0099791_10017508All Organisms → cellular organisms → Bacteria3054Open in IMG/M
3300007255|Ga0099791_10222028All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300007258|Ga0099793_10004212All Organisms → cellular organisms → Bacteria5090Open in IMG/M
3300007258|Ga0099793_10031364All Organisms → cellular organisms → Bacteria2260Open in IMG/M
3300009038|Ga0099829_10156645All Organisms → cellular organisms → Bacteria1821Open in IMG/M
3300009038|Ga0099829_10585504All Organisms → cellular organisms → Bacteria927Open in IMG/M
3300009088|Ga0099830_10077685All Organisms → cellular organisms → Bacteria2425Open in IMG/M
3300009088|Ga0099830_11162153All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300009088|Ga0099830_11837871All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300009089|Ga0099828_10371644All Organisms → cellular organisms → Bacteria1289Open in IMG/M
3300009090|Ga0099827_11181470All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300010326|Ga0134065_10433499All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300011120|Ga0150983_12849777All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300011269|Ga0137392_11496260All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300012189|Ga0137388_10440550All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300012200|Ga0137382_10405518All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300012200|Ga0137382_10981605All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300012203|Ga0137399_10028678All Organisms → cellular organisms → Bacteria3794Open in IMG/M
3300012203|Ga0137399_10106455All Organisms → cellular organisms → Bacteria2179Open in IMG/M
3300012203|Ga0137399_10181763All Organisms → cellular organisms → Bacteria1698Open in IMG/M
3300012203|Ga0137399_11018036All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis697Open in IMG/M
3300012205|Ga0137362_10122232All Organisms → cellular organisms → Bacteria2208Open in IMG/M
3300012210|Ga0137378_10159026All Organisms → cellular organisms → Bacteria2096Open in IMG/M
3300012359|Ga0137385_11360373All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300012363|Ga0137390_10958037All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300012582|Ga0137358_10156425All Organisms → cellular organisms → Bacteria → Proteobacteria1553Open in IMG/M
3300012683|Ga0137398_10224545All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300012685|Ga0137397_10192185All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300012918|Ga0137396_11059715All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300012925|Ga0137419_11259736All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300012925|Ga0137419_11566618All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300012927|Ga0137416_10200013All Organisms → cellular organisms → Bacteria1603Open in IMG/M
3300012927|Ga0137416_10665273All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300012929|Ga0137404_10516256All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300012929|Ga0137404_10783553All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300012944|Ga0137410_11354871All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300014150|Ga0134081_10282779All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300014157|Ga0134078_10337006All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300015264|Ga0137403_10766115All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300017659|Ga0134083_10422585All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis585Open in IMG/M
3300018431|Ga0066655_10772638All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300018468|Ga0066662_10497008All Organisms → cellular organisms → Bacteria → Proteobacteria1109Open in IMG/M
3300018468|Ga0066662_11057228All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300018482|Ga0066669_10129864All Organisms → cellular organisms → Bacteria1813Open in IMG/M
3300020170|Ga0179594_10044527All Organisms → cellular organisms → Bacteria1477Open in IMG/M
3300020170|Ga0179594_10260505All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300020199|Ga0179592_10000958All Organisms → cellular organisms → Bacteria11721Open in IMG/M
3300020199|Ga0179592_10003074All Organisms → cellular organisms → Bacteria → Proteobacteria7005Open in IMG/M
3300020199|Ga0179592_10028779All Organisms → cellular organisms → Bacteria2500Open in IMG/M
3300020199|Ga0179592_10133891All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300020579|Ga0210407_10001749All Organisms → cellular organisms → Bacteria19704Open in IMG/M
3300020581|Ga0210399_10143038All Organisms → cellular organisms → Bacteria1975Open in IMG/M
3300020581|Ga0210399_11484719All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300021088|Ga0210404_10423216All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300021171|Ga0210405_10000796All Organisms → cellular organisms → Bacteria39232Open in IMG/M
3300021178|Ga0210408_10114092All Organisms → cellular organisms → Bacteria2128Open in IMG/M
3300022726|Ga0242654_10227605All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300026314|Ga0209268_1116902All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300026335|Ga0209804_1250183All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300026508|Ga0257161_1117184All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300026515|Ga0257158_1108276All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300026527|Ga0209059_1199017All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis680Open in IMG/M
3300026548|Ga0209161_10034897All Organisms → cellular organisms → Bacteria3429Open in IMG/M
3300026551|Ga0209648_10005472All Organisms → cellular organisms → Bacteria10865Open in IMG/M
3300026551|Ga0209648_10007364All Organisms → cellular organisms → Bacteria9472Open in IMG/M
3300026551|Ga0209648_10011437All Organisms → cellular organisms → Bacteria → Proteobacteria7719Open in IMG/M
3300026551|Ga0209648_10138259All Organisms → cellular organisms → Bacteria → Proteobacteria1941Open in IMG/M
3300026555|Ga0179593_1061593All Organisms → cellular organisms → Bacteria2144Open in IMG/M
3300026555|Ga0179593_1156806All Organisms → cellular organisms → Bacteria2712Open in IMG/M
3300027587|Ga0209220_1017549All Organisms → cellular organisms → Bacteria1907Open in IMG/M
3300027591|Ga0209733_1018163All Organisms → cellular organisms → Bacteria1892Open in IMG/M
3300027655|Ga0209388_1029521All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1563Open in IMG/M
3300027674|Ga0209118_1004391All Organisms → cellular organisms → Bacteria5508Open in IMG/M
3300027846|Ga0209180_10009388All Organisms → cellular organisms → Bacteria5020Open in IMG/M
3300027846|Ga0209180_10506663All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300027846|Ga0209180_10567245All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300027854|Ga0209517_10645912All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300027875|Ga0209283_10054134All Organisms → cellular organisms → Bacteria2563Open in IMG/M
3300027882|Ga0209590_10781367All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300028536|Ga0137415_10409279All Organisms → cellular organisms → Bacteria1161Open in IMG/M
3300029636|Ga0222749_10381563All Organisms → cellular organisms → Bacteria744Open in IMG/M
3300031720|Ga0307469_12215196All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300031754|Ga0307475_10090346All Organisms → cellular organisms → Bacteria2374Open in IMG/M
3300031754|Ga0307475_10143663All Organisms → cellular organisms → Bacteria1891Open in IMG/M
3300031820|Ga0307473_10092043All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1588Open in IMG/M
3300031820|Ga0307473_10151555All Organisms → cellular organisms → Bacteria1319Open in IMG/M
3300031823|Ga0307478_10726459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria832Open in IMG/M
3300031962|Ga0307479_10677970All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300032180|Ga0307471_100044475All Organisms → cellular organisms → Bacteria3597Open in IMG/M
3300032180|Ga0307471_100061070All Organisms → cellular organisms → Bacteria → Proteobacteria3183Open in IMG/M
3300032180|Ga0307471_103106762All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300032205|Ga0307472_101513452All Organisms → cellular organisms → Bacteria656Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil45.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil12.84%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil10.09%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil9.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.17%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.67%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.83%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12636J13339_102998413300001154Forest SoilMGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPADNR*
JGI12635J15846_1000523893300001593Forest SoilMNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
JGIcombinedJ26739_10000932873300002245Forest SoilMGNKDRGKREVKKPPKKKPTAXELQRAAAPVFXKPA*
JGI25381J37097_105273523300002557Grasslands SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
JGI25617J43924_1001986823300002914Grasslands SoilMNYGKLSGMGNKDRGKREAKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0066701_1035453513300005552SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKP
Ga0066692_1001745823300005555SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA*
Ga0066704_1003077433300005557SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0066704_1052597713300005557SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKP
Ga0066705_1067815623300005569SoilTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0066694_1018266023300005574SoilMGNKDARKREIKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0066691_1011236623300005586SoilMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0066691_1060483123300005586SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0066651_1000087863300006031SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH*
Ga0075023_10042520313300006041WatershedsCGKLSDMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0075019_1010426523300006086WatershedsMGNKDRGKREVKKPPKKKPTAHELARANAPVFKKPA*
Ga0066660_10000003383300006800SoilMGNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0099791_1001750823300007255Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0099791_1022202823300007255Vadose Zone SoilGPAKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0099793_1000421233300007258Vadose Zone SoilMGNKDKGKREVKKPPKKKPTAHELARAAAPVFKKPA*
Ga0099793_1003136423300007258Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELSRAAAPIFKKPAENH*
Ga0099829_1015664513300009038Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0099829_1058550423300009038Vadose Zone SoilMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0099830_1007768513300009088Vadose Zone SoilLSGMGNKDRGKREVKKPPKKKPSAHELARAAAPIFKKPA*
Ga0099830_1116215313300009088Vadose Zone SoilPAKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0099830_1183787123300009088Vadose Zone SoilMNCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0099828_1037164413300009089Vadose Zone SoilTKCGKLSGMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0099827_1118147023300009090Vadose Zone SoilMGNKDRGKREIKKPPKKKPTAHELARASAPVFKKPA*
Ga0134065_1043349923300010326Grasslands SoilMNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH*
Ga0150983_1284977723300011120Forest SoilMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137392_1149626023300011269Vadose Zone SoilKCGKLSGMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0137388_1044055013300012189Vadose Zone SoilLNCGKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0137382_1040551823300012200Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKP
Ga0137382_1098160523300012200Vadose Zone SoilLTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137399_1002867813300012203Vadose Zone SoilNCGKLLGMGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137399_1010645533300012203Vadose Zone SoilSGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137399_1018176323300012203Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137399_1101803613300012203Vadose Zone SoilGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137362_1012223233300012205Vadose Zone SoilAKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137378_1015902633300012210Vadose Zone SoilPRLTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137385_1136037313300012359Vadose Zone SoilTGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137390_1095803713300012363Vadose Zone SoilMGNKDRGKREIKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137358_1015642523300012582Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPVENH*
Ga0137398_1022454523300012683Vadose Zone SoilCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137397_1019218513300012685Vadose Zone SoilEIANCGKLSAMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137396_1105971523300012918Vadose Zone SoilMGNKDARKRETKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0137419_1125973623300012925Vadose Zone SoilGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137419_1156661813300012925Vadose Zone SoilLTNCGKLSGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137416_1020001313300012927Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNQRASAIFKKTTDSR*
Ga0137416_1066527313300012927Vadose Zone SoilKLLGMGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137404_1051625623300012929Vadose Zone SoilMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAE
Ga0137404_1078355323300012929Vadose Zone SoilCGKLSHMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0137410_1135487113300012944Vadose Zone SoilNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0134081_1028277913300014150Grasslands SoilRRTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0134078_1033700623300014157Grasslands SoilKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0137403_1076611523300015264Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRGVAAIFKKTADSR*
Ga0134083_1042258513300017659Grasslands SoilAMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0066655_1077263823300018431Grasslands SoilMNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0066662_1049700823300018468Grasslands SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0066662_1105722813300018468Grasslands SoilMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA
Ga0066669_1012986423300018482Grasslands SoilMNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH
Ga0179594_1004452713300020170Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELSRAAAPIFKKPAENH
Ga0179594_1026050513300020170Vadose Zone SoilWYWLLNCGKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0179592_1000095883300020199Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0179592_1000307453300020199Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA
Ga0179592_1002877923300020199Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0179592_1013389123300020199Vadose Zone SoilGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0210407_1000174973300020579SoilMGNKDARKREVKKQPKKKPSAHELNKAAATIFKKTTDNR
Ga0210399_1014303813300020581SoilPSLTNCGKLSGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPT
Ga0210399_1148471923300020581SoilKLSAMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA
Ga0210404_1042321613300021088SoilLRNCGNLLGMGNKDRGKREVKKPPKKKPTAHELNRASAPVFKKPA
Ga0210405_10000796143300021171SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0210408_1011409213300021178SoilGNLSTMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0242654_1022760523300022726SoilPERTKCGKLSHMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209268_111690223300026314SoilMGNKDARKREIKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209804_125018323300026335SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPVENH
Ga0257161_111718413300026508SoilMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKP
Ga0257158_110827623300026515SoilMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Ga0209059_119901723300026527SoilGNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0209161_1003489743300026548SoilAKCGKLSAMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209648_1000547263300026551Grasslands SoilMGNKDKGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209648_1000736473300026551Grasslands SoilMNCGKLLGMGNKDKGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Ga0209648_1001143723300026551Grasslands SoilMGNKDARKRETKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209648_1013825923300026551Grasslands SoilMNYGKLSGMGNKDRGKREAKKPPKKKPTAHELNRAAAPIFKKPA
Ga0179593_106159313300026555Vadose Zone SoilKANCGKLSRMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0179593_115680613300026555Vadose Zone SoilNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209220_101754923300027587Forest SoilMGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPTDNR
Ga0209733_101816323300027591Forest SoilMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209388_102952113300027655Vadose Zone SoilGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA
Ga0209118_100439153300027674Forest SoilMGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPADNR
Ga0209180_1000938823300027846Vadose Zone SoilMGNKDRGKREIKKPPKKKPTAHELARASAPVFKKPA
Ga0209180_1050666323300027846Vadose Zone SoilMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0209180_1056724523300027846Vadose Zone SoilMGNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0209517_1064591223300027854Peatlands SoilMASCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0209283_1005413413300027875Vadose Zone SoilGMGNKDRGKREVKKPPKKKPSAHELARAAAPIFKKPA
Ga0209590_1078136713300027882Vadose Zone SoilYWQRIAKCGKLSGMGNKNRGKREVKKPPKKKPTAHELARAAAPIFKKPT
Ga0137415_1040927923300028536Vadose Zone SoilMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPDENR
Ga0222749_1038156323300029636SoilMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA
Ga0307469_1221519613300031720Hardwood Forest SoilGKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0307475_1009034633300031754Hardwood Forest SoilMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPE
Ga0307475_1014366323300031754Hardwood Forest SoilMGNCGKLSVMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0307473_1009204343300031820Hardwood Forest SoilMGNCGKLSAMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0307473_1015155523300031820Hardwood Forest SoilMGNKDRGKRETKKPPKKKPTAHELARAAAPIFKKPA
Ga0307478_1072645923300031823Hardwood Forest SoilMNCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPE
Ga0307479_1067797013300031962Hardwood Forest SoilMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPT
Ga0307471_10004447533300032180Hardwood Forest SoilMGNKDARNREVKKPPKKKPTAHELNRAATPIFKKPAESR
Ga0307471_10006107023300032180Hardwood Forest SoilMGNKDRGKREVKKPAKKKPTAHELARAAAPIFKKPA
Ga0307471_10310676213300032180Hardwood Forest SoilKDARKREVKKPPKKKPTAHELNRGAGAIFKKTTDSR
Ga0307472_10151345223300032205Hardwood Forest SoilNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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