Metagenome / Metatranscriptome Family F088570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088570
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	40 residues
Representative Sequence	MGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Number of Associated Samples	79
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.42 %
% of genes near scaffold ends (potentially truncated)	45.87 %
% of genes from short scaffolds (< 2000 bps)	69.72 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (45.872 % of family members)
Environment Ontology (ENVO)	Unclassified (41.284 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.872 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 1JGI12636J13339_10299841 2JGI12635J15846_100052389 3JGIcombinedJ26739_1000093287 4JGI25381J37097_10527352 5JGI25617J43924_100198682 6Ga0066701_103545351 7Ga0066692_100174582 8Ga0066704_100307743 9Ga0066704_105259771 10Ga0066705_106781562 11Ga0066694_101826602 12Ga0066691_101123662 13Ga0066691_106048312 14Ga0066651_100008786 15Ga0075023_1004252031 16Ga0075019_101042652 17Ga0066660_1000000338 18Ga0099791_100175082 19Ga0099791_102220282 20Ga0099793_100042123 21Ga0099793_100313642 22Ga0099829_101566451 23Ga0099829_105855042 24Ga0099830_100776851 25Ga0099830_111621531 26Ga0099830_118378712 27Ga0099828_103716441 28Ga0099827_111814702 29Ga0134065_104334992 30Ga0150983_128497772 31Ga0137392_114962602 32Ga0137388_104405501 33Ga0137382_104055182 34Ga0137382_109816052 35Ga0137399_100286781 36Ga0137399_101064553 37Ga0137399_101817632 38Ga0137399_110180361 39Ga0137362_101222323 40Ga0137378_101590263 41Ga0137385_113603731 42Ga0137390_109580371 43Ga0137358_101564252 44Ga0137398_102245452 45Ga0137397_101921851 46Ga0137396_110597152 47Ga0137419_112597362 48Ga0137419_115666181 49Ga0137416_102000131 50Ga0137416_106652731 51Ga0137404_105162562 52Ga0137404_107835532 53Ga0137410_113548711 54Ga0134081_102827791 55Ga0134078_103370062 56Ga0137403_107661152 57Ga0134083_104225851 58Ga0066655_107726382 59Ga0066662_104970082 60Ga0066662_110572281 61Ga0066669_101298642 62Ga0179594_100445271 63Ga0179594_102605051 64Ga0179592_100009588 65Ga0179592_100030745 66Ga0179592_100287792 67Ga0179592_101338912 68Ga0210407_100017497 69Ga0210399_101430381 70Ga0210399_114847192 71Ga0210404_104232161 72Ga0210405_1000079614 73Ga0210408_101140921 74Ga0242654_102276052 75Ga0209268_11169022 76Ga0209804_12501832 77Ga0257161_11171841 78Ga0257158_11082762 79Ga0209059_11990172 80Ga0209161_100348974 81Ga0209648_100054726 82Ga0209648_100073647 83Ga0209648_100114372 84Ga0209648_101382592 85Ga0179593_10615931 86Ga0179593_11568061 87Ga0209220_10175492 88Ga0209733_10181632 89Ga0209388_10295211 90Ga0209118_10043915 91Ga0209180_100093882 92Ga0209180_105066632 93Ga0209180_105672452 94Ga0209517_106459122 95Ga0209283_100541341 96Ga0209590_107813671 97Ga0137415_104092792 98Ga0222749_103815632 99Ga0307469_122151961 100Ga0307475_100903463 101Ga0307475_101436632 102Ga0307473_100920434 103Ga0307473_101515552 104Ga0307478_107264592 105Ga0307479_106779701 106Ga0307471_1000444753 107Ga0307471_1000610702 108Ga0307471_1031067621 109Ga0307472_1015134522
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 1JGI12636J13339_10299841 2JGI12635J15846_100052389 3JGIcombinedJ26739_1000093287 4Ga0137399_101817632 5Ga0209590_107813671
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 1JGI12636J13339_10299841 2JGI12635J15846_100052389 3JGIcombinedJ26739_1000093287 4Ga0137399_101817632 5Ga0209590_107813671
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.44% β-sheet: 0.00% Coil/Unstructured: 80.56%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF16861	Carbam_trans_C	30.28
PF13692	Glyco_trans_1_4	12.84
PF13579	Glyco_trans_4_4	10.09
PF01370	Epimerase	8.26
PF02543	Carbam_trans_N	6.42
PF00733	Asn_synthase	1.83
PF13537	GATase_7	1.83
PF01381	HTH_3	0.92
PF01494	FAD_binding_3	0.92
PF02698	DUF218	0.92

Showing 1 to 10 of 14 entries

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COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	6.42
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.83
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.92
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.92
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.92
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.75 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	2.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	2.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Unclassified	root	N/A	0.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001154\|JGI12636J13339_1029984	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300001593\|JGI12635J15846_10005238	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11209	Open in IMG/M
3300002245\|JGIcombinedJ26739_100009328	All Organisms → cellular organisms → Bacteria	7900	Open in IMG/M
3300002557\|JGI25381J37097_1052735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300002914\|JGI25617J43924_10019868	All Organisms → cellular organisms → Bacteria → Proteobacteria	2313	Open in IMG/M
3300005552\|Ga0066701_10354535	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005555\|Ga0066692_10017458	All Organisms → cellular organisms → Bacteria	3568	Open in IMG/M
3300005557\|Ga0066704_10030774	All Organisms → cellular organisms → Bacteria	3272	Open in IMG/M
3300005557\|Ga0066704_10525977	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005569\|Ga0066705_10678156	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M

Showing 1 to 10 of 109 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.83%
Terrestrial	Environmental → Terrestrial	98.17%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	1.83%
Soil	Environmental → Terrestrial → Soil	98.17%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.09%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	45.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M

Showing 1 to 10 of 79 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12636J13339_10299841	3300001154	Forest Soil	MGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPADNR*
JGI12635J15846_100052389	3300001593	Forest Soil	MNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
JGIcombinedJ26739_1000093287	3300002245	Forest Soil	MGNKDRGKREVKKPPKKKPTAXELQRAAAPVFXKPA*
JGI25381J37097_10527352	3300002557	Grasslands Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
JGI25617J43924_100198682	3300002914	Grasslands Soil	MNYGKLSGMGNKDRGKREAKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0066701_103545351	3300005552	Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKP
Ga0066692_100174582	3300005555	Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA*
Ga0066704_100307743	3300005557	Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0066704_105259771	3300005557	Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKP
Ga0066705_106781562	3300005569	Soil	TNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0066694_101826602	3300005574	Soil	MGNKDARKREIKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0066691_101123662	3300005586	Soil	MGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0066691_106048312	3300005586	Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0066651_100008786	3300006031	Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH*
Ga0075023_1004252031	3300006041	Watersheds	CGKLSDMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0075019_101042652	3300006086	Watersheds	MGNKDRGKREVKKPPKKKPTAHELARANAPVFKKPA*
Ga0066660_1000000338	3300006800	Soil	MGNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0099791_100175082	3300007255	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0099791_102220282	3300007255	Vadose Zone Soil	GPAKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0099793_100042123	3300007258	Vadose Zone Soil	MGNKDKGKREVKKPPKKKPTAHELARAAAPVFKKPA*
Ga0099793_100313642	3300007258	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELSRAAAPIFKKPAENH*
Ga0099829_101566451	3300009038	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0099829_105855042	3300009038	Vadose Zone Soil	MGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0099830_100776851	3300009088	Vadose Zone Soil	LSGMGNKDRGKREVKKPPKKKPSAHELARAAAPIFKKPA*
Ga0099830_111621531	3300009088	Vadose Zone Soil	PAKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0099830_118378712	3300009088	Vadose Zone Soil	MNCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0099828_103716441	3300009089	Vadose Zone Soil	TKCGKLSGMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0099827_111814702	3300009090	Vadose Zone Soil	MGNKDRGKREIKKPPKKKPTAHELARASAPVFKKPA*
Ga0134065_104334992	3300010326	Grasslands Soil	MNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH*
Ga0150983_128497772	3300011120	Forest Soil	MGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137392_114962602	3300011269	Vadose Zone Soil	KCGKLSGMGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA*
Ga0137388_104405501	3300012189	Vadose Zone Soil	LNCGKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0137382_104055182	3300012200	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKP
Ga0137382_109816052	3300012200	Vadose Zone Soil	LTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137399_100286781	3300012203	Vadose Zone Soil	NCGKLLGMGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137399_101064553	3300012203	Vadose Zone Soil	SGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137399_101817632	3300012203	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137399_110180361	3300012203	Vadose Zone Soil	GNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137362_101222323	3300012205	Vadose Zone Soil	AKCGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137378_101590263	3300012210	Vadose Zone Soil	PRLTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137385_113603731	3300012359	Vadose Zone Soil	TGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0137390_109580371	3300012363	Vadose Zone Soil	MGNKDRGKREIKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137358_101564252	3300012582	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPVENH*
Ga0137398_102245452	3300012683	Vadose Zone Soil	CGKLSGMGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137397_101921851	3300012685	Vadose Zone Soil	EIANCGKLSAMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA*
Ga0137396_110597152	3300012918	Vadose Zone Soil	MGNKDARKRETKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0137419_112597362	3300012925	Vadose Zone Soil	GNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA*
Ga0137419_115666181	3300012925	Vadose Zone Soil	LTNCGKLSGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA*
Ga0137416_102000131	3300012927	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNQRASAIFKKTTDSR*
Ga0137416_106652731	3300012927	Vadose Zone Soil	KLLGMGNKDARKREVKKPPKKKPTAHELNRGASAIFKKTTGSR*
Ga0137404_105162562	3300012929	Vadose Zone Soil	MGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAE
Ga0137404_107835532	3300012929	Vadose Zone Soil	CGKLSHMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA*
Ga0137410_113548711	3300012944	Vadose Zone Soil	NKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR*
Ga0134081_102827791	3300014150	Grasslands Soil	RRTNYGKITGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA*
Ga0134078_103370062	3300014157	Grasslands Soil	KLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH*
Ga0137403_107661152	3300015264	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRGVAAIFKKTADSR*
Ga0134083_104225851	3300017659	Grasslands Soil	AMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0066655_107726382	3300018431	Grasslands Soil	MNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0066662_104970082	3300018468	Grasslands Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0066662_110572281	3300018468	Grasslands Soil	MGNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA
Ga0066669_101298642	3300018482	Grasslands Soil	MNCGKLSGMGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPAENH
Ga0179594_100445271	3300020170	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELSRAAAPIFKKPAENH
Ga0179594_102605051	3300020170	Vadose Zone Soil	WYWLLNCGKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0179592_100009588	3300020199	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0179592_100030745	3300020199	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPA
Ga0179592_100287792	3300020199	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0179592_101338912	3300020199	Vadose Zone Soil	GNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0210407_100017497	3300020579	Soil	MGNKDARKREVKKQPKKKPSAHELNKAAATIFKKTTDNR
Ga0210399_101430381	3300020581	Soil	PSLTNCGKLSGMGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPT
Ga0210399_114847192	3300020581	Soil	KLSAMGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA
Ga0210404_104232161	3300021088	Soil	LRNCGNLLGMGNKDRGKREVKKPPKKKPTAHELNRASAPVFKKPA
Ga0210405_1000079614	3300021171	Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0210408_101140921	3300021178	Soil	GNLSTMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0242654_102276052	3300022726	Soil	PERTKCGKLSHMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209268_11169022	3300026314	Soil	MGNKDARKREIKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209804_12501832	3300026335	Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPVENH
Ga0257161_11171841	3300026508	Soil	MGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKP
Ga0257158_11082762	3300026515	Soil	MGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Ga0209059_11990172	3300026527	Soil	GNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0209161_100348974	3300026548	Soil	AKCGKLSAMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209648_100054726	3300026551	Grasslands Soil	MGNKDKGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0209648_100073647	3300026551	Grasslands Soil	MNCGKLLGMGNKDKGKREVKKPPKKKPTAHELNRAAAPIFKKPA
Ga0209648_100114372	3300026551	Grasslands Soil	MGNKDARKRETKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209648_101382592	3300026551	Grasslands Soil	MNYGKLSGMGNKDRGKREAKKPPKKKPTAHELNRAAAPIFKKPA
Ga0179593_10615931	3300026555	Vadose Zone Soil	KANCGKLSRMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0179593_11568061	3300026555	Vadose Zone Soil	NKDARKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209220_10175492	3300027587	Forest Soil	MGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPTDNR
Ga0209733_10181632	3300027591	Forest Soil	MGNKDRGKREVKKPPKKKPTAHELNRAAAPIFKKPAENH
Ga0209388_10295211	3300027655	Vadose Zone Soil	GNKDRGKREVKKPPKKKPTAHELARASAPVFKKPA
Ga0209118_10043915	3300027674	Forest Soil	MGNKDARNRETKKKPKKKPTAHELKRAAAPIFKKPADNR
Ga0209180_100093882	3300027846	Vadose Zone Soil	MGNKDRGKREIKKPPKKKPTAHELARASAPVFKKPA
Ga0209180_105066632	3300027846	Vadose Zone Soil	MGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0209180_105672452	3300027846	Vadose Zone Soil	MGNKDRGKREVKKPPKKKPTAHELNRAAAPVFKKPA
Ga0209517_106459122	3300027854	Peatlands Soil	MASCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPVFKKPA
Ga0209283_100541341	3300027875	Vadose Zone Soil	GMGNKDRGKREVKKPPKKKPSAHELARAAAPIFKKPA
Ga0209590_107813671	3300027882	Vadose Zone Soil	YWQRIAKCGKLSGMGNKNRGKREVKKPPKKKPTAHELARAAAPIFKKPT
Ga0137415_104092792	3300028536	Vadose Zone Soil	MGNKDARKREVKKPPKKKPTAHELNRAAAPIFKKPDENR
Ga0222749_103815632	3300029636	Soil	MGNKDRGKRETKKPPKKKPTAHELARAAAPVFKKPA
Ga0307469_122151961	3300031720	Hardwood Forest Soil	GKLFGMGNKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR
Ga0307475_100903463	3300031754	Hardwood Forest Soil	MGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPE
Ga0307475_101436632	3300031754	Hardwood Forest Soil	MGNCGKLSVMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0307473_100920434	3300031820	Hardwood Forest Soil	MGNCGKLSAMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPA
Ga0307473_101515552	3300031820	Hardwood Forest Soil	MGNKDRGKRETKKPPKKKPTAHELARAAAPIFKKPA
Ga0307478_107264592	3300031823	Hardwood Forest Soil	MNCGKLSGMGNKDRGKREVKKPPKKKPTAHELARAAAPIFKKPE
Ga0307479_106779701	3300031962	Hardwood Forest Soil	MGNKDRGKREVKKPPKKKPTAHELQRAAAPVFKKPT
Ga0307471_1000444753	3300032180	Hardwood Forest Soil	MGNKDARNREVKKPPKKKPTAHELNRAATPIFKKPAESR
Ga0307471_1000610702	3300032180	Hardwood Forest Soil	MGNKDRGKREVKKPAKKKPTAHELARAAAPIFKKPA
Ga0307471_1031067621	3300032180	Hardwood Forest Soil	KDARKREVKKPPKKKPTAHELNRGAGAIFKKTTDSR
Ga0307472_1015134522	3300032205	Hardwood Forest Soil	NKDARNREVKKPPKKKPTAHELKRAATPIFKKPAESR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088570

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences