NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088564

Metagenome Family F088564

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088564
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 113 residues
Representative Sequence MPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGALAAFGLREGSREERRVLYLGLVVLGTGLVFTVYAGVRTWGD
Number of Associated Samples 98
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.65 %
% of genes near scaffold ends (potentially truncated) 97.25 %
% of genes from short scaffolds (< 2000 bps) 95.41 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(24.771 % of family members)
Environment Ontology (ENVO) Unclassified
(36.697 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.890 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 67.91%    β-sheet: 0.00%    Coil/Unstructured: 32.09%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF00496SBP_bac_5 8.26
PF07690MFS_1 2.75
PF00188CAP 0.92
PF14015DUF4231 0.92
PF13426PAS_9 0.92
PF09286Pro-kuma_activ 0.92
PF03466LysR_substrate 0.92
PF00903Glyoxalase 0.92
PF13242Hydrolase_like 0.92
PF00290Trp_syntA 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0159Tryptophan synthase alpha chainAmino acid transport and metabolism [E] 0.92
COG2340Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domainCell cycle control, cell division, chromosome partitioning [D] 0.92
COG4934Serine protease, subtilase familyPosttranslational modification, protein turnover, chaperones [O] 0.92

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908045|KansclcFeb2_ConsensusfromContig841968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria547Open in IMG/M
3300000956|JGI10216J12902_117446139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300001686|C688J18823_10027714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3860Open in IMG/M
3300001686|C688J18823_10997219All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria531Open in IMG/M
3300004157|Ga0062590_101618669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria656Open in IMG/M
3300004643|Ga0062591_102101945All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → Haliea salexigens585Open in IMG/M
3300005093|Ga0062594_100141442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1553Open in IMG/M
3300005167|Ga0066672_10570937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria733Open in IMG/M
3300005167|Ga0066672_10735226All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria628Open in IMG/M
3300005167|Ga0066672_10986913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus peraridilitoris515Open in IMG/M
3300005172|Ga0066683_10071969All Organisms → cellular organisms → Bacteria2071Open in IMG/M
3300005174|Ga0066680_10317121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria995Open in IMG/M
3300005176|Ga0066679_10365981All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria943Open in IMG/M
3300005176|Ga0066679_10713669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria648Open in IMG/M
3300005177|Ga0066690_10246050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1199Open in IMG/M
3300005181|Ga0066678_10293203All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1063Open in IMG/M
3300005181|Ga0066678_10681844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria685Open in IMG/M
3300005332|Ga0066388_103784574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria772Open in IMG/M
3300005332|Ga0066388_107584498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus telluris544Open in IMG/M
3300005344|Ga0070661_100923544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria721Open in IMG/M
3300005355|Ga0070671_101889264All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005366|Ga0070659_101262937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria654Open in IMG/M
3300005437|Ga0070710_10227161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1190Open in IMG/M
3300005440|Ga0070705_101664114All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300005446|Ga0066686_10682912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria695Open in IMG/M
3300005447|Ga0066689_10315583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria971Open in IMG/M
3300005451|Ga0066681_10885285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria536Open in IMG/M
3300005467|Ga0070706_100196274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1886Open in IMG/M
3300005468|Ga0070707_100735862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium949Open in IMG/M
3300005530|Ga0070679_101336897All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → Haliea salexigens662Open in IMG/M
3300005536|Ga0070697_102040607All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → Haliea salexigens513Open in IMG/M
3300005546|Ga0070696_101424211All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → Haliea salexigens591Open in IMG/M
3300005554|Ga0066661_10658506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria617Open in IMG/M
3300005555|Ga0066692_10392235All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300005557|Ga0066704_10610826All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300005559|Ga0066700_10608725All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria761Open in IMG/M
3300005569|Ga0066705_10376833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium891Open in IMG/M
3300005598|Ga0066706_10621921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria857Open in IMG/M
3300005614|Ga0068856_101520965All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300005764|Ga0066903_102074296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1094Open in IMG/M
3300006032|Ga0066696_10736056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria632Open in IMG/M
3300006046|Ga0066652_101086824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria758Open in IMG/M
3300006800|Ga0066660_10568675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria950Open in IMG/M
3300006854|Ga0075425_102485297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria574Open in IMG/M
3300006903|Ga0075426_10451612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria952Open in IMG/M
3300006903|Ga0075426_10707289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia756Open in IMG/M
3300006903|Ga0075426_11100928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria601Open in IMG/M
3300006914|Ga0075436_100865852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria675Open in IMG/M
3300006954|Ga0079219_12448278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria507Open in IMG/M
3300009012|Ga0066710_103051914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
3300009038|Ga0099829_11408406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria576Open in IMG/M
3300009553|Ga0105249_12659881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria572Open in IMG/M
3300010040|Ga0126308_10365346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6958Open in IMG/M
3300010043|Ga0126380_11126539All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria671Open in IMG/M
3300010323|Ga0134086_10397614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria553Open in IMG/M
3300010325|Ga0134064_10343889All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria580Open in IMG/M
3300010329|Ga0134111_10471610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria547Open in IMG/M
3300010371|Ga0134125_11332548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria783Open in IMG/M
3300010398|Ga0126383_10280508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1653Open in IMG/M
3300012200|Ga0137382_10264627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1194Open in IMG/M
3300012208|Ga0137376_10755909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium838Open in IMG/M
3300012208|Ga0137376_10903323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria758Open in IMG/M
3300012285|Ga0137370_10314286All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria937Open in IMG/M
3300012350|Ga0137372_10250422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1394Open in IMG/M
3300012532|Ga0137373_10209471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1599Open in IMG/M
3300012958|Ga0164299_10974340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria622Open in IMG/M
3300012960|Ga0164301_10986036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria661Open in IMG/M
3300012975|Ga0134110_10344756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria651Open in IMG/M
3300012976|Ga0134076_10578793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria522Open in IMG/M
3300012986|Ga0164304_10272094All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1147Open in IMG/M
3300014318|Ga0075351_1061408All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300014969|Ga0157376_10864267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium920Open in IMG/M
3300015245|Ga0137409_11375892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria550Open in IMG/M
3300015357|Ga0134072_10079708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium970Open in IMG/M
3300015358|Ga0134089_10371736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria606Open in IMG/M
3300015374|Ga0132255_104408147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria597Open in IMG/M
3300017944|Ga0187786_10630632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria507Open in IMG/M
3300018032|Ga0187788_10103489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1031Open in IMG/M
3300018056|Ga0184623_10258481All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria794Open in IMG/M
3300018482|Ga0066669_10202902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1520Open in IMG/M
3300019869|Ga0193705_1085491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria600Open in IMG/M
3300019875|Ga0193701_1042968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium922Open in IMG/M
3300021078|Ga0210381_10311033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria570Open in IMG/M
3300021080|Ga0210382_10079337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1342Open in IMG/M
3300025932|Ga0207690_11332376All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria600Open in IMG/M
3300026078|Ga0207702_10881020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium887Open in IMG/M
3300026298|Ga0209236_1285576All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria533Open in IMG/M
3300026300|Ga0209027_1300173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria518Open in IMG/M
3300026310|Ga0209239_1151225All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria921Open in IMG/M
3300026318|Ga0209471_1078833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1458Open in IMG/M
3300026342|Ga0209057_1067428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1578Open in IMG/M
3300026550|Ga0209474_10590227All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria567Open in IMG/M
3300027765|Ga0209073_10384757All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria572Open in IMG/M
3300028710|Ga0307322_10233790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria508Open in IMG/M
3300028711|Ga0307293_10011370All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2497Open in IMG/M
3300028718|Ga0307307_10006791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2965Open in IMG/M
3300028722|Ga0307319_10106301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium900Open in IMG/M
3300028755|Ga0307316_10395683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria511Open in IMG/M
3300028799|Ga0307284_10055823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1400Open in IMG/M
3300028803|Ga0307281_10116226All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria913Open in IMG/M
3300028807|Ga0307305_10007608All Organisms → cellular organisms → Bacteria4687Open in IMG/M
3300028807|Ga0307305_10135265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1138Open in IMG/M
3300028819|Ga0307296_10713435All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria548Open in IMG/M
3300028828|Ga0307312_10165845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1407Open in IMG/M
3300028875|Ga0307289_10428917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria543Open in IMG/M
3300028881|Ga0307277_10225493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium824Open in IMG/M
3300028881|Ga0307277_10396282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria617Open in IMG/M
3300028884|Ga0307308_10111015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1307Open in IMG/M
3300028885|Ga0307304_10303844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria705Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil24.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.27%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.34%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.42%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.50%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.59%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.75%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.75%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.83%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.83%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.83%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.83%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.83%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.92%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.92%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.92%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.92%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.92%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908045Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_160493302124908045SoilMQRFLPVGKDAQGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGSGALAVFLGAVAAFALREGSGEERRVLYAGLGVLGAGLVFTVYAGVRTWGDRPQPSITVTPRSGSRVAVSVKGIGLRSSDHS
JGI10216J12902_11744613913300000956SoilVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLRENSAAERGVLHLGLAVLGGGLVLTVYAGVR
C688J18823_1002771413300001686SoilMPSRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWASFGAFGCAALAVFLGAVAAFGLRENSEAEHRVLHTGLVVLGAGLVLTVYAGVRTWGDRPQPSVTLTPKSGSLVTV
C688J18823_1099721923300001686SoilMPSRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWASFASFGCAALAVFLGAVAAFGLREGSDAER
Ga0062590_10161866913300004157SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFGLREGSSEERRVLYAGLGVLGAGLVFTVYAGVRTWGDRPQPSITVTPKSGSKVAVSVK
Ga0062591_10210194513300004643SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLREGSDAERRVLHLGLAVLGAGLVLTVFAGVRTWGDRPQPSITITQKHASLVTVAVHG
Ga0062594_10014144213300005093SoilMPPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWASFGAFGCAALAVFLGAVAAFGLREDSEAERRVLHTGLVVLGAGLVLTVYAGVRTWGDRPQPSVTLTP
Ga0066672_1057093713300005167SoilMPRLLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPLATFGAFGCAVLAVFFGALAAFGLREDSKEERRALYLGLVVLGAGLVFTVYAGVKTWGDRPQPS
Ga0066672_1073522623300005167SoilMPRLLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCIVLAVFLGAVAAFGLRESSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSITVTPK
Ga0066672_1098691313300005167SoilMPRILPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCGSLAVFLGAVASFGLRESSKEERHVLYLGLAVLGAGLVLTVYAGVKTWGDRPQPSITVTPKRG
Ga0066683_1007196933300005172SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFALLEGSSEERRVLYAGLGVLGAGLVFTVYA
Ga0066680_1031712113300005174SoilMQRFLPVGKDAKSAARFLLAALPALGAVLTGLAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFALREGSSEERRVLYLGLAVLGAGLVFT
Ga0066679_1036598113300005176SoilMPRILPVGKDAQGAARFLLAALPALGALLTTLAITGDIVGRMARNHPWATFAAFGCGSLAVFLGGVASFGLRQSSDEERRVLYLGLAALGAGLVFTVYAGVRT
Ga0066679_1071366923300005176SoilMPRLLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCIVLAVFLGAVAAFGLRESSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSLTVTPK
Ga0066690_1024605013300005177SoilMPRLLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCIVLAVFLGAVAAFGLRESSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSLTVTPKRGSVVAV
Ga0066678_1029320323300005181SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDVVGRMARNHPWASFGAFGCGAVAVFLGAVAAFGLREGSSEERRVLYLGLGVLGAGLVFTVYAGVRTWGDRPQPSITVTPKSASKVAVSVKGIGLRS
Ga0066678_1068184423300005181SoilMPRFLPVGKDAKGAAGFLLAALPALGALLTALAISGDLIGRMARNHSLVTFGAFGCAALAVFLGAIAAYGLQEGSREERGTLYVGIVVLGGALVFAVYAGVATWGDRAQPSITVTPKSAGVVSVSVRDIGLRSSDHIVVEVEQLLPGKDA
Ga0066388_10378457423300005332Tropical Forest SoilMDRLLPVGKDAKGAAGLLLAALPAIGALLTALAITGDIVGRMARNHPLSTLGAFGCGAIAVFLGAAAAYGLQEGSLRERRVLQLGLVVLGAGLVLGVYAGVETWGDRTEPSITV
Ga0066388_10758449813300005332Tropical Forest SoilMPRTLPVGPESKGAAGLLLGALPALGALLAALTITGDIVGRMARNHPVATLGAFGCATVAVFLGGIAAYGVPEGSPHERRALQLGLLVLGAGLLLGVYAGVETWGDRTEPSITVTPRAGSGVVVTVSGSGLRSSDHLVVEV
Ga0070661_10092354413300005344Corn RhizosphereMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGSFGCAALAVFLGAVAAFGLRESSDAERRVLYLGLVVLGSGLVLTVYAGVRTWGDRPQPSITI
Ga0070671_10188926423300005355Switchgrass RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLSEGSDAERRVLHLGL
Ga0070659_10126293723300005366Corn RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGAFGCAALAVFLGALAAFGLRENSSGERRVLYVGLVVLGA
Ga0070710_1022716113300005437Corn, Switchgrass And Miscanthus RhizosphereMPPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWASFGAFGCAALAVFLGAVAAFGLREDSEAERRVLHTGLVVLGAGLVL
Ga0070705_10166411423300005440Corn, Switchgrass And Miscanthus RhizosphereMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFGLREGSSEERRVLYAGLC
Ga0066686_1068291223300005446SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSSEERRV
Ga0066689_1031558323300005447SoilMERLLPVGKETKGAAGLLLAALPAVGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAVAAYGLHVGSIAERRVLQLGLVVLGAGLVLG
Ga0066681_1088528513300005451SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPWATFAAFGCAALAVFLGSVAAWGLRESSTEERHVLYLGLLVLGAGLVFTVYAGVTTWGDRPQPSITVTPKHGSVVGITVHGT
Ga0070706_10019627413300005467Corn, Switchgrass And Miscanthus RhizosphereVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWASFASFGCAALAVFLGAVAAFGLREGSDGERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSITVTPKRGAVVGISVHDSGLRSSDHLVVEVEQL
Ga0070707_10073586223300005468Corn, Switchgrass And Miscanthus RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWASFASFGCAALAVFLGAVAAFGLREGSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSITVTPKRGAVVGISV
Ga0070679_10133689713300005530Corn RhizosphereMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGSFGCAALAVFLGAVAAFGLRESSDAERRVLYLGLVVLGSGLVLTVYAGVRTW
Ga0070697_10204060713300005536Corn, Switchgrass And Miscanthus RhizosphereMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGAMAVFLGAIAAFGLREGSSEERRVLYAGLCVLGAGLVFTVYAGVR
Ga0070696_10142421113300005546Corn, Switchgrass And Miscanthus RhizosphereMQRFLPVGKDAKGAARFLLAGLPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSNEERRALYAGLGVL
Ga0066661_1065850623300005554SoilMPRLLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPLATFGAFGCAVLAVFFGALAAFGLREDSKEERRALYLGLVVLGAGLVFTVYAGVKTWGDRPQPSITVTPKR
Ga0066692_1039223523300005555SoilMERLLPVGKETKGAAGLLLAALPAVGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAVAAYGLHVGSIAERRVLQLGLVVLGAGLVLGVFAGVETWGDKTGPSITVTPRSGSVVSISVSETGLRSSDHL
Ga0066704_1061082613300005557SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDVVGRMARNHPWASFGAFGCGAVAVFLGAVAAFGLREGSSEERRVLYLGLGVLGAG
Ga0066700_1060872523300005559SoilMPRLLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCIVLAVFLGAVAAFGLRESSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSITVTPKRGSVVAVSVHGTGLRSSDHLVVEVDQL
Ga0066705_1037683313300005569SoilMPRLLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPLATFGAFGCAALAVFFGALAAFGLGEDSKEERRAL
Ga0066706_1062192123300005598SoilMERLLPVGKETKGAAGLLLAALPAVGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAVAAYGLHVGSIAERRVLQLGLVVLGAGLVLGVFAGVETWGDKTEPSITVTPRSGS
Ga0068856_10152096523300005614Corn RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLREGSDAERRVL
Ga0066903_10207429613300005764Tropical Forest SoilALLTALAITGDIVGRMARNHPLSTLGAFGCGAIAVFLGAAAAYGLQEGSVRERRALQLGLVVLGAGLVLGVYAGVETWGDRTEPSITVTPRSGSVVAIAVHGTGLRSSDHLVVEVEQLVRVAGERGSRSGKPASRSTARPSGRMAPARSITPST*
Ga0066696_1073605613300006032SoilMQRFLPVGKDAKGAARFLLASLPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSREERRVLYAGLTVLGAGLVFTVYAGVRTWGDRPQPSLTVTPKSGSKVAVSVKGIGLRSSDHIVIEV
Ga0066652_10108682433300006046SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTGLAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSSEERRVLYAGLAVLGAGLVFTVYAGVRTWGDRPQPSLTVTPKSGSKVAVSVKGIGLRSSDHIVIE
Ga0066660_1056867513300006800SoilMPRLLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFAAFGCIVLAVFLGAVAAFGLRESSDAERRVLYLGLAVLGSGLVFTVYAGVRTWGDRPQPSITVTPKRGSVVAVSVH
Ga0075425_10248529713300006854Populus RhizosphereMDRLLPVGKDAKGAAGLLLAALPAIGALLTALAITGDIVGRMARNHPLSTLGAFGCGAVAVFLGAVAAYGLREGSPGERRALQLGLVVLGAGLVLGVYAGVETWGDRTEPSI
Ga0075426_1045161213300006903Populus RhizosphereMERLLPVGKEAKGAAGLLLAALPAIGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAIAAYGLHEGSIAERRVLQFGL
Ga0075426_1070728913300006903Populus RhizosphereMDRLLPVGKDAKGAAGLLLAALPAIGALLTALTVTGDLVGRMARNHPLSTLGAFGCGAVAVFLGAVAAYGLREGSLGERRVLQFGLVVLGSGL
Ga0075426_1110092823300006903Populus RhizosphereMDRLLPVGKDAKGAAGLLLAALPAIGALLTALAITGDIVGRMARNHPLSTLGAFGCGAVAVFLGAVAAYGLREGSPGERRALQLGLVVLGAGLVLGVYAGVETWGDRTEPSITVTP
Ga0075436_10086585213300006914Populus RhizosphereMERLLPVGKEAKGAAGLLLAALPAIGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAIAAYGLHEGSIAERRVLQFGLVVLGSGLVLGVFAGVETWGDKTEPSITVTPRSGSVVSI
Ga0079219_1244827823300006954Agricultural SoilVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAVAAFGLRESSDAERRVL
Ga0066710_10305191413300009012Grasslands SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFALLEGSSEERRVLYAGLGVLGAGLVFTVYAGVRTWGDRPQPSITVTPTSASKV
Ga0099829_1140840613300009038Vadose Zone SoilMPRFLPIGKEAKGAAGFLLAALPALGALLTTLAISGDLIGRMARNHPLASFGAFGSAAIAVFLGAVAAYGLPEGSREERGVLSLGILVLGAALVFGVYAGVATWGDRAQPSITVTPKS
Ga0105249_1265988113300009553Switchgrass RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGAFGCAALAVFLGALAAFGLRENSSGERRVLYVGLVVLGACLVFTVYGG
Ga0126308_1036534613300010040Serpentine SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPLATFTAFGCAALAVFLGAVAAFGLRENSQEERRVLYLGLVVLGAGLVFTV
Ga0126380_1112653913300010043Tropical Forest SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAVAAFGLRESSDAERRVLYLGLVVLGSGLVMTVYAGVRTWGDRPQPSITITPKRGS
Ga0134086_1039761423300010323Grasslands SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSSEERRVLYTGLAVLGAGLVFTVYAGVRTWGDRPQPSLTVTP
Ga0134064_1034388923300010325Grasslands SoilMQRFLPVGKDAKGAARFLLAALPVLGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFALLEGSNEERRVLYAGLGVLGAGLVFTVYAGVRTWGDRP
Ga0134111_1047161013300010329Grasslands SoilMQRFLPVGKDAKGAARFLLAALPVLGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAIAAFALLEGSNEERRVLYAGLGVLGAGLV
Ga0134125_1133254823300010371Terrestrial SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLSEGSDAERRVLHLGLAVLGAGLVLTVFAGVRTWGDRPQPSITITQKRASLVSVAVHSSGLRSSDHLVVE
Ga0126383_1028050823300010398Tropical Forest SoilMPRFLPVGKDAQGAAKFLLAALPALGALLTALAITGDLVGRMARNHPWSTFAAFGCAALAVFLGAVAAFGLRESSDAERRVLYLGLVVLGTGLVMTVYAGVRTWGDRPQPSITITPKRGALVTVTVRASGLRSRDHLVVRVEQLSRAGT
Ga0137382_1026462723300012200Vadose Zone SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYVGLVVLGTGLVFTVYAGVRTWGDRPQPSITVTPKRGSLVTVAVRGTRLRSSDHLLV*
Ga0137376_1075590923300012208Vadose Zone SoilMPRLLPVGKDAQGAARFLLTALPALGALLTALAITGDLVGRMARDHPSATFAAFGCAALAVFFGAVATYGLRENSKEERRALYLGLVVLGAGLVFTVYAGVTTWGDRPQ
Ga0137376_1090332313300012208Vadose Zone SoilMQRFLPVGKDAKGTARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFALREGSGE
Ga0137370_1031428623300012285Vadose Zone SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYVGLVVLGTGLVFTVYAGVRTWGDRPQPSITVTPKRGSLVTVAVRGTGLRSTDHLLVQVEQLLRATDD
Ga0137372_1025042213300012350Vadose Zone SoilMSRFLPVGKDARGAARFLLAALPALGALLTALAITGDLVGRMARNHPWASFAAFGCAVLAVFLGAVAAFSLKENSRAERRVLYLGLVVLGVGLVFTVYA
Ga0137373_1020947113300012532Vadose Zone SoilMPRFLPVGKDAKGAAGFLLAALPALGALLTALAISGDLIGRMARNHSLVTFGAFGCAALAVFLGAIAAYGLQEGSREERGTLYVGIVVLGGALVFAVYAGVATWGDRAQPSITVTPKS
Ga0164299_1097434013300012958SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAVAAFGLRESSDAERRVLYVGLAVLGGALVVTVYAGVRTWGDRPQPSITITPKHGSLVTVTVHGSGLSSNDHL
Ga0164301_1098603613300012960SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAVAAFGLRESSDAERRVLYVGLAVLGGALVVTVYAGVRTWGDRPQPSITITPKHGSLV
Ga0134110_1034475613300012975Grasslands SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSSEERRVLYLGLGVLGAGLVFTVYAG
Ga0134076_1057879313300012976Grasslands SoilMQRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGAFGCAALAVFLGAVAAFGLREGSREERRVLYSGLA
Ga0164304_1027209433300012986SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAVAAFGVRESSDAERRVLYVGLAVLGSGLVVTVYAGVRTWGDRPQPSITITPKHGSLVTVTVHGSGLSSSD
Ga0075351_106140813300014318Natural And Restored WetlandsMPKRLPVGEESKGAAGLLLAALPALGALLAALTITGNVVGRMARNHPLATFGAFDCAAIAVFLGAIAAYGLPEGSRQERGVLRLGLGVLGAALVL
Ga0157376_1086426713300014969Miscanthus RhizosphereMPRFLPVGKDAQGAARFLLGALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLREGSDAERRVLHRGLAVL
Ga0137409_1137589223300015245Vadose Zone SoilVQRLLPVGKDVKGAAGFLLAALPVVGALLTALAITGDLVGRMARNHPLTTLGAFGCAVLAVFLGAVAAYGLHEGSLGERRVLQLGLVV
Ga0134072_1007970823300015357Grasslands SoilMPRLLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPWATFAAFGCAALAVFLGSVAAWGLRESSTEERHVLYLGLLVLGAGLVFTVYAGVKTWGDRPQPSVTLTPKRGSLVGVTVRGAGLRSSDHLF
Ga0134089_1037173633300015358Grasslands SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSREERRVLYAGLTVLGAGL
Ga0132255_10440814713300015374Arabidopsis RhizosphereMPKRLPVGQESKGAAGLLLAALPALGALLATLTITGNVVGRMARNHPFATLGAFDCAAIAVFLGAIAAYGLPEGSPQEHRVLGLGLGVLGAALVLGVYAGVQTWGDRTEPSITVIPRSGSVVTVSVSGSGLRSSDHL
Ga0187786_1063063213300017944Tropical PeatlandMPKRLPVGDESKGAAGLLLAALPALGALLAALTITGNVVGRMARNHPLATLGAFGCAAMAVFLGAIAAYGLPEGSRQEHRVLRLGLGVLGAALILGVYAGVQTWGDRTEPSITVTPRS
Ga0187788_1010348913300018032Tropical PeatlandMPKRLPVGDESKGAAGLLLAALPALGALLAALTITGNVVGRMARNHPLATLGAFGCAAMAVFLGAIAAYGLPEGSRQEHRVLRLGLGVL
Ga0184623_1025848113300018056Groundwater SedimentMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWASFGAFGCAALAVFLGAVAAFGLRQGSPEER
Ga0066669_1020290233300018482Grasslands SoilMTRRLVHVGKDAKGAAGFLLASLPALGAVFTGLAITGDLVGRMARDHPIATFGAFGSASLAVFLGAVATFCLREGSRAERIAVDVGIGVLGAGLVV
Ga0193705_108549113300019869SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGALAAFGLREGSREERRVLYLGLVVLGTGLVFTVYAGVRTWGD
Ga0193701_104296813300019875SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLG
Ga0210381_1031103313300021078Groundwater SedimentMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLREGSNEERRVLYLGLVVLGTGLVFT
Ga0210382_1007933713300021080Groundwater SedimentMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGALAAFGLREGSREERRVLYLGLVVLGT
Ga0207690_1133237613300025932Corn RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGAFGCAALAVFLGALAAFGLRENSSGERRVLYVGLVVLGACLVFTVYGGVRTWGDRPQP
Ga0207702_1088102013300026078Corn RhizosphereMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGNLVGRMARNHPWATSGSFGCAALAVFLGAVAAFGLREGSDAERRVLHLGLAVLG
Ga0209236_128557613300026298Grasslands SoilMERLLPVGKETKGAAGLLLAALPAVGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAVAAYGLHVGSIAERRVLQLGLIVLGAGLVLGVFAGVETWGDKTEPSITVTPRSGSVVSISVSEPLETRR
Ga0209027_130017313300026300Grasslands SoilMPRFLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPWATFAAFGCAALAVFLGSVAAWGLRESSTEERHVLYLGLLVLGAGLVFTVYAGVTTWGDRPQPSITVTPKHGSVVGITVHGTGLRASDHLVVEVEQLVRATDDR
Ga0209239_115122513300026310Grasslands SoilMERLLPVGKETKGAAGLLLAALPAVGALLTALAITGDIVGRMARNHPLTTLGAFGCAALAVVLGAVAAYGLHVGSIAERRVLQLGLVVLGAGLVLGVFAGVETWGDKTEPSITVTPRSGSVVSISVSETGLRSSDHLV
Ga0209471_107883323300026318SoilMPRLLPVGKDAQGAARFLLAALPALGALLTALAITGDLVGRMARDHPLATFGAFGCAVLAVFFGALAAFGLREDSKEERRALYLGLFVLGAGLVFAGYAGVKTWGDRPQPSITVTPKRGSVVGISVRGTGLRSTDHLV
Ga0209057_106742843300026342SoilMQRFLPVGKDAKGAARFLLASLPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSREERRVLYAGLTVLGAGLVFTVYAGVRTWGDRPQPSLTVTPKSGSKVAVSVKGIGLRSSDHIVIEVEQLRRVRDRHGHL
Ga0209474_1059022713300026550SoilMPRFLPVGKDSQGAARFLLAALPALGALLTTLAITGNLVGRMARDHPWAAFAAFGCAAVAVFLGAVAAFCLRESSSEERRVLYLGLAVLGAGLVFTVYAGVKTWGDRPQPSVTLTPRRGALVGVTVHGTGLRSSDHLVVE
Ga0209073_1038475723300027765Agricultural SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGSFGCAALAVFLGAVAAFGLRESSDAERRVLYLGLVVLGSGLVLTVY
Ga0307322_1023379013300028710SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFGSFGCAAFAVFLGALAAFGLREGSREERRVLYLGLV
Ga0307293_1001137013300028711SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGSLVAV
Ga0307307_1000679113300028718SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGSLVAVAVRGTGLR
Ga0307319_1010630113300028722SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTV
Ga0307316_1039568313300028755SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVKTWGDRPQPSITVTP
Ga0307284_1005582323300028799SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGALAAFGLREGSREERRVLYLGLVVLGTGL
Ga0307281_1011622613300028803SoilMPRFLPIGKEAKGTAGFLLAALPALGALLTALAISGDLIGRMARNHPLASFGAFGSAALAVFLGAIAAYGLQEGSREERGVLSLGIVVLGAALVFGVYAGVETWGDRTQPSIT
Ga0307305_1000760813300028807SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGALAAFGLREGSREERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGSLVAVAV
Ga0307305_1013526513300028807SoilMPRFLPIGKEAKGAAGFLLAALPALGALLTALAISGDLIGRMARNHPLASFGAFGSASLAVFLGAVAAYGLQEGSREERGVVSLGILVLGAALVFGVYAGVETWGDRAQPSITVTPK
Ga0307296_1071343513300028819SoilMPRLLPVGKDVKGAAGFLLAAFPAVGALLAGLAITGDIVGRMARNHPVATLGSFGCAVLAVFLGAVAAYGLHEGSIGERRVLQLGLVGMGAALVLGVYAGVATWGDRTEPSITVTPKSGSVVAVSVRGTGLRSSDHLIVEVEQLLRVPGE
Ga0307312_1016584523300028828SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGSLVTVAVRGTGLRSSDHLL
Ga0307289_1042891713300028875SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLREGSNEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGSLVAVAVRG
Ga0307277_1022549323300028881SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVRT
Ga0307277_1039628223300028881SoilMQRFLPVGKDAKGAARFLLAALPALGAVLTALAVTGDLVGRMARNHPWASFGAFGCGALAVFLGAVAAFGLREGSSEERRVLYVGLAVLGAGLV
Ga0307308_1011101523300028884SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLRQGSNEERRVLYLGLVVLGTGLVFTVYAGVR
Ga0307304_1030384413300028885SoilMPRFLPVGKDAKGAARFLLAALPALGALLTALAITGDLVGRMARNHPWATFASFGCAALAVFLGAIAAFGLREGSKEERRVLYLGLVVLGTGLVFTVYAGVRTWGDRPQPSVTVTPKRGS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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