Metagenome / Metatranscriptome Family F088560

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088560
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	69 residues
Representative Sequence	MPARSGRLEKRIRLAVPVQISSPLDPAATERTTTENVCSLGIRILTQRARDLNERLMIRSLMGDLRTLARV
Number of Associated Samples	90
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.25 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	88.99 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.982 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.697 % of family members)
Environment Ontology (ENVO)	Unclassified (37.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.24% β-sheet: 32.32% Coil/Unstructured: 43.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00990	GGDEF	60.55
PF00196	GerE	11.01
PF00072	Response_reg	0.92
PF07602	DUF1565	0.92
PF08673	RsbU_N	0.92
PF00005	ABC_tran	0.92
PF01041	DegT_DnrJ_EryC1	0.92
PF02518	HATPase_c	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2208	Phosphoserine phosphatase RsbU, regulator of sigma subunit	Transcription [K]	1.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.92
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.92
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.92
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.92
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.89 %
Unclassified	root	N/A	22.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.11 %
Unclassified	root	N/A	22.02 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Unclassified	root	N/A	22.02 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %
Acidiferrobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Unclassified	root	N/A	22.02 %
Acidiferrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1101133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300001137\|JGI12637J13337_1000201	All Organisms → cellular organisms → Bacteria	3798	Open in IMG/M
3300001159\|JGI12650J13346_1001671	Not Available	966	Open in IMG/M
3300001867\|JGI12627J18819_10281124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300002914\|JGI25617J43924_10002809	All Organisms → cellular organisms → Bacteria	4892	Open in IMG/M
3300002917\|JGI25616J43925_10095126	All Organisms → cellular organisms → Bacteria → Acidobacteria	1234	Open in IMG/M
3300005187\|Ga0066675_10617683	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300005332\|Ga0066388_107631308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005363\|Ga0008090_14844921	Not Available	657	Open in IMG/M
3300005574\|Ga0066694_10482496	Not Available	579	Open in IMG/M
3300005712\|Ga0070764_10680733	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300006034\|Ga0066656_10147823	All Organisms → cellular organisms → Bacteria → Acidobacteria	1467	Open in IMG/M
3300006800\|Ga0066660_10739508	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300006806\|Ga0079220_10021466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2732	Open in IMG/M
3300006854\|Ga0075425_101518735	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M
3300006903\|Ga0075426_10001366	All Organisms → cellular organisms → Bacteria	17281	Open in IMG/M
3300009038\|Ga0099829_11078262	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300009038\|Ga0099829_11202659	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300009038\|Ga0099829_11364791	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300009143\|Ga0099792_10181736	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300009143\|Ga0099792_11181708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300010358\|Ga0126370_12456310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300010360\|Ga0126372_11035768	Not Available	835	Open in IMG/M
3300010361\|Ga0126378_10080857	Not Available	3147	Open in IMG/M
3300010937\|Ga0137776_1599848	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300011270\|Ga0137391_10063669	All Organisms → cellular organisms → Bacteria → Acidobacteria	3160	Open in IMG/M
3300012199\|Ga0137383_10788480	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300012199\|Ga0137383_11326733	Not Available	512	Open in IMG/M
3300012202\|Ga0137363_10608496	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300012202\|Ga0137363_11189712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300012203\|Ga0137399_11384449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300012205\|Ga0137362_10746824	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300012206\|Ga0137380_10480271	All Organisms → cellular organisms → Bacteria → Acidobacteria	1097	Open in IMG/M
3300012206\|Ga0137380_11293657	Not Available	614	Open in IMG/M
3300012209\|Ga0137379_11443647	Not Available	590	Open in IMG/M
3300012211\|Ga0137377_11089056	Not Available	729	Open in IMG/M
3300012211\|Ga0137377_11319230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300012349\|Ga0137387_10794104	Not Available	685	Open in IMG/M
3300012359\|Ga0137385_11371500	Not Available	570	Open in IMG/M
3300012361\|Ga0137360_10527982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1006	Open in IMG/M
3300012361\|Ga0137360_11222703	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300012361\|Ga0137360_11434827	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300012685\|Ga0137397_10376488	All Organisms → cellular organisms → Bacteria → Acidobacteria	1058	Open in IMG/M
3300012922\|Ga0137394_10966857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300012923\|Ga0137359_10241281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1613	Open in IMG/M
3300012923\|Ga0137359_10430893	All Organisms → cellular organisms → Bacteria → Acidobacteria	1168	Open in IMG/M
3300012925\|Ga0137419_11017738	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300012927\|Ga0137416_11655473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300012927\|Ga0137416_11789778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300012944\|Ga0137410_11879540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300012975\|Ga0134110_10112319	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300012976\|Ga0134076_10355374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300015052\|Ga0137411_1175072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300015054\|Ga0137420_1410117	All Organisms → cellular organisms → Bacteria	1883	Open in IMG/M
3300015264\|Ga0137403_11368055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300015358\|Ga0134089_10120335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1019	Open in IMG/M
3300015358\|Ga0134089_10179757	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300017936\|Ga0187821_10066247	Not Available	1306	Open in IMG/M
3300019789\|Ga0137408_1003992	All Organisms → cellular organisms → Bacteria → Acidobacteria	1503	Open in IMG/M
3300020199\|Ga0179592_10134590	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300020579\|Ga0210407_10060476	All Organisms → cellular organisms → Bacteria	2836	Open in IMG/M
3300020579\|Ga0210407_11050478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300020581\|Ga0210399_10690198	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300021046\|Ga0215015_10147808	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300021046\|Ga0215015_10672400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	833	Open in IMG/M
3300021178\|Ga0210408_10712168	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300021178\|Ga0210408_11510629	Not Available	503	Open in IMG/M
3300021178\|Ga0210408_11520486	Not Available	501	Open in IMG/M
3300021405\|Ga0210387_10006122	Not Available	9231	Open in IMG/M
3300021474\|Ga0210390_10921029	Not Available	718	Open in IMG/M
3300021478\|Ga0210402_10146779	Not Available	2146	Open in IMG/M
3300021478\|Ga0210402_10196651	Not Available	1852	Open in IMG/M
3300021478\|Ga0210402_10715787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300021479\|Ga0210410_10775163	Not Available	843	Open in IMG/M
3300021560\|Ga0126371_10849281	Not Available	1058	Open in IMG/M
3300022512\|Ga0242676_1027333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300022528\|Ga0242669_1031459	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300022709\|Ga0222756_1024273	Not Available	797	Open in IMG/M
3300022713\|Ga0242677_1010725	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300022718\|Ga0242675_1011251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1109	Open in IMG/M
3300024219\|Ga0247665_1059122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300024330\|Ga0137417_1084161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300026304\|Ga0209240_1003991	All Organisms → cellular organisms → Bacteria	5560	Open in IMG/M
3300026309\|Ga0209055_1174810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300026310\|Ga0209239_1282790	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300026323\|Ga0209472_1284876	Not Available	527	Open in IMG/M
3300026326\|Ga0209801_1128853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300026328\|Ga0209802_1314879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300026343\|Ga0209159_1183543	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300026515\|Ga0257158_1097755	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300026547\|Ga0209156_10309738	Not Available	710	Open in IMG/M
3300026550\|Ga0209474_10331659	Not Available	868	Open in IMG/M
3300026551\|Ga0209648_10000490	All Organisms → cellular organisms → Bacteria	30390	Open in IMG/M
3300027671\|Ga0209588_1051088	All Organisms → cellular organisms → Bacteria → Acidobacteria	1337	Open in IMG/M
3300027855\|Ga0209693_10632818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300027882\|Ga0209590_10509962	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300027903\|Ga0209488_10475104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300028536\|Ga0137415_10331549	All Organisms → cellular organisms → Bacteria → Acidobacteria	1325	Open in IMG/M
3300029701\|Ga0222748_1140025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300030730\|Ga0307482_1027353	All Organisms → cellular organisms → Bacteria → Acidobacteria	1243	Open in IMG/M
3300031663\|Ga0307484_105863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300031720\|Ga0307469_12148058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300031753\|Ga0307477_10582157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300031754\|Ga0307475_10030851	All Organisms → cellular organisms → Bacteria	3891	Open in IMG/M
3300031754\|Ga0307475_10405119	All Organisms → cellular organisms → Bacteria → Acidobacteria	1096	Open in IMG/M
3300031793\|Ga0318548_10370517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300031823\|Ga0307478_10374948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300031962\|Ga0307479_10275581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae	1662	Open in IMG/M
3300032039\|Ga0318559_10423633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.33%
Aquatic	Environmental → Aquatic	1.83%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.83%
Loam	Environmental → Terrestrial → Soil → Loam	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.34%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300001159	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_11011331	3300000655	Forest Soil	MAVRSGRLEKRIQLSLPVQISNLSDPSMTERTTTENVCSLGMRLLTQKARERNERLMISSMVGDMRALARVVYCQRLPDGRFG
JGI12637J13337_10002011	3300001137	Forest Soil	MPVRSGRLEKRIRLAVPVQISSLLDPAATERTTTENVCSLGIRILTQRARDLNERLMIISVMGDQ
JGI12650J13346_10016711	3300001159	Forest Soil	MPLGSGRLEKRIEVAVPLQICSILDPDTAERTTTENICSLGIRVLTERARELDERLMISS
JGI12627J18819_102811242	3300001867	Forest Soil	MPLGSGRLEKRTSLAVPVQIFSLQDPSVTEQTTTENVCSLGLRVLMHGAKEQNERLLIKS
JGI25617J43924_100028096	3300002914	Grasslands Soil	MISQMPVRSGRIEKRIRLAVPVQISSLLDPAATVRTTTENVCSLGVRVLTERAMDLNERLMIRSLGGDCERWPA*
JGI25616J43925_100951262	3300002917	Grasslands Soil	MAARSGRLEKRIRLAVPVEILNPQNPAAAERTTTENVCSLGMRVLTQRARDLNERLM
Ga0066675_106176831	3300005187	Soil	MGVRSGRLEKRIQLSLPVQISSLYDPSASERTTTENVCSLGMRVLTQKAKELNERLMISSLV
Ga0066388_1076313081	3300005332	Tropical Forest Soil	MAVRSGRLEKRIHLSLPVQISNFFDPSMTERTTTENVCSLGMRLLTQKARERNERLMISSMVGDMRAI
Ga0008090_148449212	3300005363	Tropical Rainforest Soil	MAVRSGRLEKRIQLSLPVQISNLSDPSMTERTTTENVCSLGMRLLTQKARERNERLMI
Ga0066694_104824962	3300005574	Soil	MPVRSGRLEKRIRMAVPVQIASLLDPAAAERTTTENVCSLGMRVLTQRARQLNERLMISSLVGDLRAL
Ga0070764_106807331	3300005712	Soil	MPVRSGRLEKRIGLAVAVQISSLLDPAATERTTTENVCSLGIRILSQRARDLNERLMISSVMGDQRTLGRVVYCQRL
Ga0066656_101478231	3300006034	Soil	MPARSGRLEKRVQLTVPVQISSIQDPAATERAATENVCSLGVRILTQRAKEMNERLMIRSLMGDLRTLARVVYCQRLP
Ga0066660_107395081	3300006800	Soil	MAVRSGRLEKRIQLSLPVQISSLYDPSKAERTTTENVCSLGMRLLTQKAKELNERLMISSLVGDLRALARVVY
Ga0079220_100214661	3300006806	Agricultural Soil	MAVRSGRLEKRIQLSLPVQVSSLYDPSANERTTTENVWSLGMRILTQKAKELNDRLMISSLVGDLRALARVVYCQRLPDGRF
Ga0075425_1015187351	3300006854	Populus Rhizosphere	MAVRSGRLEKRIQLSLPVQVSSLYDPSANERTTTENVCSLGMRLLTQKAKELNERL
Ga0075426_1000136619	3300006903	Populus Rhizosphere	MAVRSGRLEKRVQLSLPVQISSLYYPFTSERTTTENICSLGMRVVTQKARELNQRLMISSLVGDLRALARVVYCQ
Ga0099829_110782622	3300009038	Vadose Zone Soil	MPVRLGRLEKRIRLAVPVQISSLRDPAATERTTTENVCSLGIRILTQRARDLNERLMISSLMGDLRTLARVVYC
Ga0099829_112026592	3300009038	Vadose Zone Soil	MAVRSGRLEKRIRLAVPVQISSLLDPAATERTTTENVCSLGIRIFTQRPRDLNERLMISSLVGDVRTLARVVYCQ
Ga0099829_113647911	3300009038	Vadose Zone Soil	MPERSGRLEKRIRLVAAVEICSVQSPAATERTTTENFCPLGIRILTQRARVLNERLW
Ga0099792_101817361	3300009143	Vadose Zone Soil	MAARSGRLEKRVRLAVPIEITSPQNPAAAERTTTENVCSLGIRVLTQRARNSNEQIMISSLAGDLRTFARVVY
Ga0099792_111817082	3300009143	Vadose Zone Soil	MRSGRLEKRIRLAVPVEIAGPEDAGEAERTTTENVCSLGIRILTQRARDSNERLMISALMGDLRALA
Ga0126370_124563101	3300010358	Tropical Forest Soil	MAVRSGRLEKRIQLSLAVQISSLYDPSTIERTTTENICSLGMRVLTQKAKELNARLMISSLVGDLRALARVVYCQR
Ga0126372_110357681	3300010360	Tropical Forest Soil	MPQPHETDRDPEDERTPMAVRSGRLEKRIHLPLLVRISSLYDPSKSECTTTENVCSLGMRVLTQKARDFNERLMISSLVGDLRAL
Ga0126378_100808571	3300010361	Tropical Forest Soil	MPLRFGRLEKRIRLTVPLEVSSLHDPSATERTTTENVCSLGVRVLTRQSKERNERLLIKSLADDLRALA
Ga0137776_15998482	3300010937	Sediment	MAVRSGRLEKRIQLSLPVQVSSLYDPSTNERTTTENVCSLGMRLLTQKAKELNERLMISSLVGDLRALARVVYCQ
Ga0137391_100636697	3300011270	Vadose Zone Soil	MPARSGRLEKRIRLAVPVQISSLLDPAATERTTTENVCSLGIRILTQRARDLNERLMISS
Ga0137383_107884801	3300012199	Vadose Zone Soil	MPTRSGRLEKRVQLTVPVQISSIRDPAATERTTTENVCSLGVRILTQRAKEMN
Ga0137383_113267331	3300012199	Vadose Zone Soil	MPVRSGRLEKRVQLTVPVQISSIRDPAATERTTTENVCSLGVRILTQRAKEMN
Ga0137363_106084962	3300012202	Vadose Zone Soil	MPARSGRLEKRIRLAVPVEISSSRTADEVERTTTENVCSVGIRILTQRAKDSNERLIINSLVGDLRAVARVVYCQ
Ga0137363_111897121	3300012202	Vadose Zone Soil	MPLGSGRLEKRIEVSIPLQISTILDPDAAEQTTTENVCSLGMRILTGHARELNERLMIT
Ga0137399_113844491	3300012203	Vadose Zone Soil	MPERSGRLEKRIRLAAPVEISSLQNQAATERTTTENFCSLGMRILTQRARELNERLWIRSLDGDLRTLARVVYCQRLPGG
Ga0137362_107468241	3300012205	Vadose Zone Soil	MPARSGRLEKRIRLAVPVEISSSRTADEVERTTTENVCSVGIRILTQRAKDSNERLIINSLVGDLRAVARVVYCQRLAD
Ga0137380_104802711	3300012206	Vadose Zone Soil	MPARSGRLEKRIQLAVPLQISSVLDPAAAEQATTENVSSLGMRVLTQRARALNERLMISSLMGDVRVRTFACVVY
Ga0137380_112936571	3300012206	Vadose Zone Soil	MPTRSGRLEKRVQLTVPVQISSIRDPAATERTTTENVCSLGVRILTQRAKEMNERLMIRSLMGDLRTLARVVYC
Ga0137379_114436471	3300012209	Vadose Zone Soil	MPTRSGRLEKRVQLTVPVQISSIRDPAATERTTTENVCSLGVRILTQRAKEMNERLMIRSLMGDLRTLARVV
Ga0137377_110890561	3300012211	Vadose Zone Soil	MPMGIGRLEKRVRLAVPVEISCPGDPSATERTTTENVCSKGVRLVTKHARELNEQLMICSLVGDL
Ga0137377_113192301	3300012211	Vadose Zone Soil	MPARSGRLEKRVQLTVPVQISSIQDPAATERAATENVCSLGVRILTQRAKEMNERLMIRSLMGDLRTLARVVYCQRLPDG
Ga0137387_107941041	3300012349	Vadose Zone Soil	MPAKSGRLEKRVQLTVPVQISSIQDPAATERTTTENVCSLGVRILTQRAKEMNERLMIRSLMGDLRTLARVVY
Ga0137385_113715002	3300012359	Vadose Zone Soil	MPAKSGRLEKRVQLTVPVQISSIQDPAATERTTTENVCSLGVRILTQRAKEM
Ga0137360_105279821	3300012361	Vadose Zone Soil	MPARSGRLEKRIRLAVPVQISSLLDPAATERTTTENVCSLGIRILTQRARDLNERLMI
Ga0137360_112227031	3300012361	Vadose Zone Soil	MPARSGRLEKRVRLSVPVEISSSRNADEVERTTTENVCSAGIRILTQRAKDSN
Ga0137360_114348272	3300012361	Vadose Zone Soil	MPERSGRLEKRIWLVAAIEICSVQNPAATERTTTENFCSLGIRVLTQRARELNERLWVRSLDEDLRTL
Ga0137397_103764881	3300012685	Vadose Zone Soil	MPARSGRLEKRIRLAVPVQISSPLEPAATERTTTENVCSLGIRILTQRARDLNERL
Ga0137394_109668571	3300012922	Vadose Zone Soil	MPAGSGRLEKRIHLAVPVEIFSPHNPSEAERTTTENVCSLGIRVLTQRARNLNERLMISSLVGDLRTLGRVVYCQRL
Ga0137359_102412811	3300012923	Vadose Zone Soil	MPERSGRLEKRIRLEVPVQISSLRDASATERATAENVCSLGVRILTQRAWELNQRLWVKLLDRDLRTLARVVYCQR
Ga0137359_104308931	3300012923	Vadose Zone Soil	MPARSGRLEKRIRLAVPVQISSPLEPAATERTTTENVCSLGIRILTQRSRDLNERLMIRSLVGDLRTLA
Ga0137419_110177381	3300012925	Vadose Zone Soil	MAARSGRLEKRVRLAVPIEITSPQNPATAERTTTENVCSLGIRVLTQRARNSNE
Ga0137416_116554732	3300012927	Vadose Zone Soil	MPARSGRLEKRIPLAVPLQISSVLDPAAAEQTTTENVCSLGVRVLTQRARELNERLMISSFMGDLRTFARVVYCQRLPNG
Ga0137416_117897781	3300012927	Vadose Zone Soil	MPTKSGRLEKRIRLAVPVEISSPQNTSPAERTTTENVCSLGIRVLSQRARELNERLMINSLVGD
Ga0137410_118795402	3300012944	Vadose Zone Soil	MPAGSGRLEKRVRLAVPLQIASILDPTASERTTTENVCSLGMRVLTQRARDLNERIMIKSLMGDLRTFARVV
Ga0134110_101123192	3300012975	Grasslands Soil	MPARSGRLEKRIRLAVPIEVSSPHNPSAAERTTTENVCSLGVRVLSQRAKELNERLMVSS
Ga0134076_103553742	3300012976	Grasslands Soil	MPARSGRLEKRIPLAVPLQISSVLDPAAAERTTTENVCSLGMRVLTQRARELNERLMISSLMGDLRTFARVVYC
Ga0137411_11750721	3300015052	Vadose Zone Soil	MPVRSGRLEKRIRLAVPVQISSLLDPAATERTTTENVCSMGIRILTERARDLNERLMISS
Ga0137420_14101171	3300015054	Vadose Zone Soil	MPARSGRLEKRIRLAVPVEISSSRTADEVERTTTENVCSVGIRILTQRAKDSNERLIIN
Ga0137403_113680551	3300015264	Vadose Zone Soil	MPVRSGRIEKRIRLAVPVQISSLLDPAATVRTTTENVCSLGVRVLTERAMDLNERLMIRSLGGDLRTLARVVYC
Ga0134089_101203352	3300015358	Grasslands Soil	MPARSGRLEKRIRLAVPIEVSSPHNPSAAERTTTENVCSLGVRVLSQRAKELNERLMVSSLVG
Ga0134089_101797571	3300015358	Grasslands Soil	MPARSGRLEKRVQLTVPVQISSIQDPAATERAATENVCSLGVRILTQRAKEMNERL
Ga0187821_100662473	3300017936	Freshwater Sediment	MPVRSGRLEKRIRLAVPVQISSMLDPAATERTTTENVCSLGIRILTQRARDLNERLMISSVMGDQ
Ga0137408_10039922	3300019789	Vadose Zone Soil	MSGRSGRLEKRIRLEVPVQISSPLDPSAIERTTTENVCSSGVRIFTRRAKEQNDRLIVKSLAGDLRTLARVVYCQRLSDG
Ga0179592_101345902	3300020199	Vadose Zone Soil	MSVRSGRLEKRIRLAVPVEITSLQYPSANERVTTENVCSLGIRVLAEHARELNERLMISSSAADLRTLARVVYCQR
Ga0210407_100604761	3300020579	Soil	MPLRSGRLEKRIEVAIPLQISTILDPDAAERTTTENVCSLGMRVLTDHARELNERLMITS
Ga0210407_110504781	3300020579	Soil	MRVRSGRLEKRIPLAAQVEISSLQLAATERTTTENLCSLGIRILTQRARELNERVWVRFPAGDLRTLARVVYCQRLPD
Ga0210399_106901981	3300020581	Soil	MPVRSGRLEKRIPLAAAVEISSLQPAAAERTTTDNLCSLGIRIMTQRARELNERVWVRFLDGDLR
Ga0215015_101478081	3300021046	Soil	MPARSGRLEKRIRLAVPVEIFSPQNPAAAERTTTENVSSLGIRVLTQRVRDSNERLMIS
Ga0215015_106724001	3300021046	Soil	MPERSGRLEKRIRLVAAVEICSVQNPAATERTTTENFCSLGIRILTQRARELNERLWVRSLDADLRTLARVVYCQRLPDGRFG
Ga0210408_107121682	3300021178	Soil	MPVRSGRLEKRIRLAVPVQISSLMDPAATERTTTENICSLGIRILTQRARDLNERLMISSVMGDQRTLGR
Ga0210408_115106291	3300021178	Soil	MPQRSGRLEKRIKVEISAQISSPIDPAEMEPAATENVCSLGVRILTQRARDMNERLWIRLLEGNLR
Ga0210408_115204862	3300021178	Soil	MPARSGRLERRIRLSVPVEISNLLDPAATERTATENVCSLGIRILTRRARDLNERLMISSLVGELRT
Ga0210387_1000612210	3300021405	Soil	MPVRSGRLEKRIRLAVPVQISSLLDAAVTERTTTENVCSLGIRILTQRARDLNERLMISSVMGDQRTLGRV
Ga0210390_109210291	3300021474	Soil	MSLRSGRLEKRIEVAIPLQISTILDPDGTERTTTENVCSLGIRVLTDHARELNERLMISSLKGGLKRLARVV
Ga0210402_101467791	3300021478	Soil	MPARSGRLEKRIQLAVPVQISSLLDPAATERTTTENVCSLGIRILTQRARDLNERLMISSVMGDQRTLGRVVYCQRLPDGR
Ga0210402_101966514	3300021478	Soil	MPERSGRLEKRIRLVAAVEICSVQNPAATERTTTENFCSLGIRILTQRARELNERLWIRSLDEGLQTLARVVYC
Ga0210402_107157872	3300021478	Soil	MPERSGRLEKRIRLVAAVEICSVQNPAATERTTTENFCSLGIRILTQRARELNEQLWVRSLDEDLRTLARVVYCQRLPDGRF
Ga0210410_107751631	3300021479	Soil	MPERSGRLEKRIRLVAAVEICSVQNPAATERTTTENFCSLGIRILTQRARELNEQLWVRSLGEDLRTL
Ga0126371_108492812	3300021560	Tropical Forest Soil	MAVRSGRLEKRIQLSLPVQISSLYDPSTSERTTTENVCSLGMRVLTQKAKELNERLMISSLVGDLRALARVVYCQ
Ga0242676_10273331	3300022512	Soil	MPVRYGRLEKRIRLAVPVQISSLLDPTATERTITENVCSLGIRILTQRARDLNE
Ga0242669_10314592	3300022528	Soil	MPQRSGRLEKRIRLEVPVQISSPQDPSATEQTTTENVCALGMRILTQRARELNE
Ga0222756_10242733	3300022709	Soil	MPVRSGRLEKRIPLAVPVQISSLLDPAATERTNTENVCSLGIRILTQRARDLNERLMISSVMGDQRT
Ga0242677_10107251	3300022713	Soil	MPQRSGRLEKRVKVEIPAQISSSVDPAEMEQAATENVCSLGVRILTQRARDMNERLWIRLLEGNLR
Ga0242675_10112511	3300022718	Soil	MPVRSGRLEKRIPLAVPVQISSLLDPAATERTNTENVCSLGIRILTQRARDLNERLMISSVKGDQRSLGRVVY
Ga0247665_10591221	3300024219	Soil	MLMRSGRLEKRIRLAVPVEISSVVDPVATERTTTENICSLGIRIVTQRARDLNERLMISSFMGELR
Ga0137417_10841612	3300024330	Vadose Zone Soil	MPARSGRLEKRIRLAVPVQISSPLEPAATERTTTENVCSLGIRILTQRARDLNERLMICSLVGDLRTLARVVYCQ
Ga0209240_10039919	3300026304	Grasslands Soil	MPARSGRLEKRIRLAVPVQISSPLDPAATERTTTENVCSLGIRILTQRARDLNERLMIRSLMGDLRTLARV
Ga0209055_11748102	3300026309	Soil	MAVRSGRLEKRIQLSLPVQISSLYDPSASERTTTENVCSLGMRVLTQKAKELNERLMISSLVGDLRALARVVYC
Ga0209239_12827901	3300026310	Grasslands Soil	MPAGSGRLEKRIRLAVPVEVSSPQNPSAAERTTTENVCSLGIRVLSQRAKELNERLLVSSIV
Ga0209472_12848762	3300026323	Soil	MPVRSGRLEKRIRMAVPVQIASLLDPAAAERTTTENVCSLGMRVLTERARQLNERLMISSLVGDLRALA
Ga0209801_11288532	3300026326	Soil	MPAGSGRLERRIRLAVPVEVSSPQNPSAAERTTTENVCSLGIRVLSQRAKELNERLLVSSIVGDLRTVARVVYCQRLPD
Ga0209802_13148792	3300026328	Soil	MPAGSGRLERRIRLAVPVEVSSPQNPSAAERTTTENVCSLGIRVLSQRAKELNERLLVSSIVGDLRT
Ga0209159_11835432	3300026343	Soil	MAVRSGRLEKRIQMSLPVQISSLYDPSTTERTTTENVCSLGMRVLTQKAKELNDRLMISSMVGDLRALARVVY
Ga0257158_10977552	3300026515	Soil	MPVRSGRLEKRIRLAVPVRISSVLDLAVTERTTTENVCSLGIRILTQRARDLNERLMVTSLMGDLRTL
Ga0209156_103097381	3300026547	Soil	MGVRSGRLEKRIQLSLPVQISSLYDPSASERTTTENVCSLGMRVLTQKAKELNERLMISSLVGD
Ga0209474_103316592	3300026550	Soil	MPARSGRLEKRIRLAVPVQIASLLDPAAAERTTTENVCSLGMRILTQRARQQNERLMISSLVGDLRAL
Ga0209648_1000049023	3300026551	Grasslands Soil	MPVRSGRIEKRIRLAVPVQISSLLDPAATVRTTTENVCSLGVRVLTERAMDLNERLMIRSLGGDCERWPA
Ga0209588_10510881	3300027671	Vadose Zone Soil	MSERSGRLEKRIRLAVPVEILNPQNPAAAERTTTENVCSLGMRVLTRRARDLNERLMIRSLGGDLQ
Ga0209693_106328181	3300027855	Soil	MPARSGRLEKRIRLAVPVQISSILDPSVTERTTTENVCSLGMRILTQGSRDLNERLMISSLAGDFLRSPARVVYCQRLPN
Ga0209590_105099622	3300027882	Vadose Zone Soil	MPAKSGRLEKRVQLTVPVQISSIQDPAATERTTTENVCSLGVRILTQRAKEMNERLMI
Ga0209488_104751043	3300027903	Vadose Zone Soil	MRSGRLEKRIRLAVPVEIAGPEDAGEAERTTTENVCSLGIRILTQRARDSNERLMISALMGDLRALAR
Ga0137415_103315493	3300028536	Vadose Zone Soil	MPARSGRLEKRIQLAVPVQISSVLDPVATERTTTENVCSLGIRVLTQRARDLNEQLIISP
Ga0222748_11400251	3300029701	Soil	MRARSGRLEKRTRLAVPVEITSLQYTSANERTTTENVCSLGIRVVTQNARELNERLMIQSLVGDLRTLARVVYCQRLPDGHFG
Ga0307482_10273533	3300030730	Hardwood Forest Soil	MLQMPVRSGRLEKRIRLAVAVQISSPLDPAATERTTTENVCSLGIRILSQRARDLNE
Ga0307484_1058631	3300031663	Hardwood Forest Soil	MPARSGRLEKRIPLAVPLQISSVLDPATSERTTSQNVCSLGMRVVSERARQLNERL
Ga0307469_121480582	3300031720	Hardwood Forest Soil	MPARSGRLEKRIRLAVPVQIASLLDPAAAERTTTENVCSLGMRVLTQRARQQNERLMISSLVGDLRALARVVYCQRLPN
Ga0307477_105821572	3300031753	Hardwood Forest Soil	MPARLGRLEKRIRLAVPVQISSLQDPAATERTTTENVCSLGIRILTQQARDSNERLMISTLLGDLRILARVVYCQRLPDGRF
Ga0307475_100308515	3300031754	Hardwood Forest Soil	MAVRSGRLEKRIQLSLPVQVSSLYDPSRTERTTTENVCSLGMRLLTQKARELNERLMISSLVGDMRALARV
Ga0307475_104051191	3300031754	Hardwood Forest Soil	MNRAWKVISQMGERSGRLEKRIQLAVPVQISSLLDPAETERTTTENVCLLGIRIFTKRSRDSNERL
Ga0318548_103705172	3300031793	Soil	MAVRWGRLEKRIQLSLPVQISSLYDPSKAERTTTENVCSLGMRVLTQKAKELNERLMISSLVGDLRALARVVYCQRLPDGRF
Ga0307478_103749483	3300031823	Hardwood Forest Soil	MPARSGRLEKRIRLAVQVEISSLLAPAATERTTTENVCSLGIRILTQRARHLNEQLMISTLMGDLRILARVVYCQRLPDGRF
Ga0307479_102755813	3300031962	Hardwood Forest Soil	MPARSGRLEKRIRLSVPVEISNLLDPAATERTATENVCPLGIRILTRRARDLNERLMISSLVGGLRTLAQVVYCQRLPDGRFG
Ga0318559_104236332	3300032039	Soil	MAVRWGRLEKRIQLSLPVQISSLYDPSKAERTTTENVCSLGMRVLTQKAKELNERLMISSLVGDLRALARVVYC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088560

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences