Metagenome / Metatranscriptome Family F088522

Basic Information
Family ID	F088522
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	53 residues
Representative Sequence	GLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Number of Associated Samples	81
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.27 %
% of genes near scaffold ends (potentially truncated)	37.61 %
% of genes from short scaffolds (< 2000 bps)	39.45 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (74.312 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (39.450 % of family members)
Environment Ontology (ENVO)	Unclassified (59.633 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.963 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.06% β-sheet: 1.96% Coil/Unstructured: 50.98%
Feature Viewer

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
All Organisms	root	All Organisms	25.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
Viruses	superkingdom	All Organisms → Viruses	25.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.31 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	20.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003388\|JGI25910J50241_10050273	All Organisms → Viruses → Predicted Viral	1299	Open in IMG/M
3300003394\|JGI25907J50239_1100821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	563	Open in IMG/M
3300003411\|JGI25911J50253_10190578	Not Available	570	Open in IMG/M
3300005581\|Ga0049081_10108116	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1034	Open in IMG/M
3300005581\|Ga0049081_10194285	Not Available	729	Open in IMG/M
3300006802\|Ga0070749_10752525	Not Available	519	Open in IMG/M
3300006803\|Ga0075467_10118955	All Organisms → Viruses → Predicted Viral	1552	Open in IMG/M
3300006805\|Ga0075464_10397652	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	837	Open in IMG/M
3300006874\|Ga0075475_10179286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	916	Open in IMG/M
3300006920\|Ga0070748_1321286	Not Available	549	Open in IMG/M
3300007540\|Ga0099847_1245187	Not Available	515	Open in IMG/M
3300007670\|Ga0102862_1181829	Not Available	543	Open in IMG/M
3300009039\|Ga0105152_10140866	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	986	Open in IMG/M
3300009056\|Ga0102860_1093916	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	830	Open in IMG/M
3300009529\|Ga0114919_11076482	Not Available	540	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10233758	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1129	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10380582	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	884	Open in IMG/M
3300017700\|Ga0181339_1015570	Not Available	868	Open in IMG/M
3300017707\|Ga0181363_1094942	Not Available	504	Open in IMG/M
3300017716\|Ga0181350_1171006	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	500	Open in IMG/M
3300017723\|Ga0181362_1042617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	954	Open in IMG/M
3300017754\|Ga0181344_1134722	Not Available	708	Open in IMG/M
3300017777\|Ga0181357_1086215	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
3300017778\|Ga0181349_1145044	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	857	Open in IMG/M
3300017778\|Ga0181349_1287116	Not Available	537	Open in IMG/M
3300017780\|Ga0181346_1316399	Not Available	525	Open in IMG/M
3300017785\|Ga0181355_1319175	Not Available	578	Open in IMG/M
3300018420\|Ga0181563_10206604	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1194	Open in IMG/M
3300020109\|Ga0194112_10504009	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	848	Open in IMG/M
3300020151\|Ga0211736_10554650	All Organisms → Viruses → Predicted Viral	1244	Open in IMG/M
3300022179\|Ga0181353_1135734	Not Available	577	Open in IMG/M
3300022190\|Ga0181354_1193013	Not Available	611	Open in IMG/M
3300022407\|Ga0181351_1245661	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	561	Open in IMG/M
3300025635\|Ga0208147_1050242	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1069	Open in IMG/M
3300025687\|Ga0208019_1054421	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
3300027707\|Ga0209443_1150171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	849	Open in IMG/M
3300027732\|Ga0209442_1080372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1345	Open in IMG/M
3300031999\|Ga0315274_10905510	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	917	Open in IMG/M
3300033981\|Ga0334982_0130466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1298	Open in IMG/M
3300033995\|Ga0335003_0149036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1166	Open in IMG/M
3300034101\|Ga0335027_0666890	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	623	Open in IMG/M
3300034106\|Ga0335036_0092490	All Organisms → Viruses → Predicted Viral	2233	Open in IMG/M
3300034122\|Ga0335060_0269856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	941	Open in IMG/M
3300034355\|Ga0335039_0593939	Not Available	544	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.89%
Marine	Environmental → Aquatic → Marine	32.11%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	42.20%
Lake	Environmental → Aquatic → Freshwater → Lake	22.02%
Coastal	Environmental → Aquatic → Marine → Coastal	22.02%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.50%
River	Environmental → Aquatic → Freshwater → River	3.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	42.20%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	22.02%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	17.43%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.59%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	3.67%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.67%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.92%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	39.45%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	20.18%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	3.67%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.67%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.75%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.75%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.83%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.92%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.92%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	0.92%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300007670	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3	Environmental	Open in IMG/M
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental	Open in IMG/M
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental	Open in IMG/M
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental	Open in IMG/M
3300017700	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024282	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8d	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300024492	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h	Environmental	Open in IMG/M
3300024499	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8h	Environmental	Open in IMG/M
3300025585	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027487	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d	Environmental	Open in IMG/M
3300027688	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)	Environmental	Open in IMG/M
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034018	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2236_10359076	3300001968	Marine	VGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
JGI25910J50241_100502734	3300003388	Freshwater Lake	AGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS*
JGI25907J50239_11008213	3300003394	Freshwater Lake	GPAGLPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA*
JGI25911J50253_101905782	3300003411	Freshwater Lake	LQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS*
Ga0049081_101081163	3300005581	Freshwater Lentic	KVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0049081_101942852	3300005581	Freshwater Lentic	KVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGVQAQTA*
Ga0049085_102418391	3300005583	Freshwater Lentic	GSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA*
Ga0079957_13059822	3300005805	Lake	GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPSYDLSVGVQAQTA*
Ga0075470_101259402	3300006030	Aqueous	GNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQTA*
Ga0070749_107525251	3300006802	Aqueous	GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT*
Ga0075467_101189551	3300006803	Aqueous	ILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA*
Ga0075464_103976521	3300006805	Aqueous	SGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA*
Ga0075464_108489172	3300006805	Aqueous	IVRMDYPIKVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDVGGQEYPCYDISVGVQAQTA*
Ga0070754_101915241	3300006810	Aqueous	VRMDYPIKIVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT*
Ga0075475_101792861	3300006874	Aqueous	PIKIVGSGPAGLPVLREILQISATVLGSDIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0070748_13212862	3300006920	Aqueous	VLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLTVGVQAQTA*
Ga0075460_102262721	3300007234	Aqueous	QITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0070745_13138802	3300007344	Aqueous	AGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLLVGVQAQTA*
Ga0099847_12451872	3300007540	Aqueous	VLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0099846_11552091	3300007542	Aqueous	AGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0099846_11610781	3300007542	Aqueous	TTIAGNGNIVRMDYPIKVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPGYNLSVGVQAQTA*
Ga0102861_11561732	3300007544	Estuarine	PAGLPVLREILQISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA*
Ga0102863_10610541	3300007622	Estuarine	QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS*
Ga0102862_11818291	3300007670	Estuarine	QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0104242_10446601	3300008962	Freshwater	VIRVDFPVKVVGSGPAGLPVLREILQISATVLGSSIIVTSGQPSTLEIGGQEFPCYDLTCALAGITA*
Ga0105152_101408661	3300009039	Lake Sediment	AGLPVLREILQITATVLGSSVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA*
Ga0102860_10939163	3300009056	Estuarine	REILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA*
Ga0114978_103608571	3300009159	Freshwater Lake	KIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDLAVGVQAQTA*
Ga0114919_104503443	3300009529	Deep Subsurface	IVRVDFPIKVIGSGPAGLPVLREILQITATVLGSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA*
Ga0114919_110764822	3300009529	Deep Subsurface	GNIVRVDFPIKVIGSGPAGLPVLREILQITATVLVSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA*
Ga0136655_12462331	3300010316	Freshwater To Marine Saline Gradient	TVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA*
Ga0129318_101376921	3300011009	Freshwater To Marine Saline Gradient	GLPVLREILQITALVLGSSVIAMSGRPDTLDIGGQEYPCYDVAVGLQAQSA*
(restricted) Ga0172367_102337584	3300013126	Freshwater	GSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA*
(restricted) Ga0172373_103805821	3300013131	Freshwater	VLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA*
(restricted) Ga0172373_107940431	3300013131	Freshwater	SGPAGLPVLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA*
(restricted) Ga0172372_105282381	3300013132	Freshwater	AGLPVLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA*
Ga0181339_10155702	3300017700	Freshwater Lake	MDYPIKIVGSGPAGLPVLREILQITALVLGSSIIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181339_10332042	3300017700	Freshwater Lake	GPAGLPVLREILQITALVLGSSIIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181364_10211681	3300017701	Freshwater Lake	ITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181363_10949421	3300017707	Freshwater Lake	FPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181350_10559543	3300017716	Freshwater Lake	AGNGNIVRMDFPIKVVGSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0181350_11039831	3300017716	Freshwater Lake	VGSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0181350_11129701	3300017716	Freshwater Lake	ILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0181350_11150172	3300017716	Freshwater Lake	ALVLGSCDIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181350_11222892	3300017716	Freshwater Lake	TALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0181350_11710061	3300017716	Freshwater Lake	PAGLPVLREILQITATVLGSAIIITSGQPGVLEIGGQEYPCYDLTCGIAARTA
Ga0181362_10426171	3300017723	Freshwater Lake	GNGSIVRMDFPNKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181362_10771902	3300017723	Freshwater Lake	GSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0181365_10757753	3300017736	Freshwater Lake	NNCSGAVGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181365_10985661	3300017736	Freshwater Lake	NVWSAAAGFSELREILQISALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181344_11347221	3300017754	Freshwater Lake	SGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181356_11346523	3300017761	Freshwater Lake	PVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181358_12134141	3300017774	Freshwater Lake	GSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0181358_12481992	3300017774	Freshwater Lake	GPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181357_10862154	3300017777	Freshwater Lake	ALVLGSSIIAMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0181349_11450443	3300017778	Freshwater Lake	QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0181349_11566553	3300017778	Freshwater Lake	LREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181349_11576833	3300017778	Freshwater Lake	SGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0181349_12871162	3300017778	Freshwater Lake	GNIVRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST
Ga0181346_11781592	3300017780	Freshwater Lake	RMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTT
Ga0181346_11917491	3300017780	Freshwater Lake	IKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181346_13163992	3300017780	Freshwater Lake	VRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST
Ga0181355_13191752	3300017785	Freshwater Lake	YPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0181355_13535251	3300017785	Freshwater Lake	IAGNGNIVRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST
Ga0181563_102066041	3300018420	Salt Marsh	GSGPAGLPVLREILQISATVLGSSIIVTSGQPSTLEIGGQEFPCYDLTCALAGITA
Ga0194112_105040093	3300020109	Freshwater Lake	ILQIASSVLGSSVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA
Ga0211736_105546501	3300020151	Freshwater	PAGLPVLREILQITATVLGSSVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTT
Ga0194130_106163851	3300021376	Freshwater Lake	AGLPVLREILQIASSVLGSSVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA
Ga0222715_107124161	3300021960	Estuarine Water	EILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0222712_105926651	3300021963	Estuarine Water	TVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0181353_11357341	3300022179	Freshwater Lake	LGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0181354_11211723	3300022190	Freshwater Lake	IKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0181354_11930132	3300022190	Freshwater Lake	GEILQITALVLGSRVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0181351_11917471	3300022407	Freshwater Lake	PIKIVGSGSAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQS
Ga0181351_12456612	3300022407	Freshwater Lake	AGLPVLREILQITATVLGSAIIITSGQPGVLEIGGQEYPCYDLTCGIAAQTA
Ga0255217_10344272	3300024282	Freshwater	VRMDFPIKIVGSGPAGLPVLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0209986_102964161	3300024433	Deep Subsurface	ATVLGSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA
Ga0255189_10022885	3300024492	Freshwater	VLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0255195_10155253	3300024499	Freshwater	TTIAGNGNIVRMDFPIKIVGSGPAGLPVLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0208546_10910942	3300025585	Aqueous	GNIVRMDYPIKIVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0208147_10502421	3300025635	Aqueous	GPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0208147_11617331	3300025635	Aqueous	ILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA
Ga0208019_10544211	3300025687	Aqueous	SGPAGLPVLREILQISATVLASAIIVTSGRPGVLEIGGQEYPCYDLTCGIAARTA
Ga0208784_12018562	3300025732	Aqueous	VLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0208645_11998891	3300025853	Aqueous	LQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT
Ga0208644_13726011	3300025889	Aqueous	GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT
Ga0208916_103669642	3300025896	Aqueous	GSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0208916_105100722	3300025896	Aqueous	ISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0255091_10455481	3300027487	Freshwater	GLLVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0209553_12056421	3300027688	Freshwater Lake	VLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0209443_11501711	3300027707	Freshwater Lake	LQISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA
Ga0209443_12621402	3300027707	Freshwater Lake	TVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0209442_10803721	3300027732	Freshwater Lake	DYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0209246_100223496	3300027785	Freshwater Lake	DFPIKVVGSGPAGLPVLREILQITATVLGSSVVVMSGRPGTLEIGGQEYPCYDLELGMQAQTA
Ga0209246_100314975	3300027785	Freshwater Lake	ATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0209354_101102561	3300027808	Freshwater Lake	ILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0315274_109055101	3300031999	Sediment	DYPIKIVGSGPAGLPVLREILQITALVLESSVIAMSGRPGTLDIGGQEYPCYDVAIGLQAQSS
Ga0315274_114144112	3300031999	Sediment	IVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0315276_111154123	3300032177	Sediment	KVVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS
Ga0315276_115219611	3300032177	Sediment	GSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0334982_0130466_469_621	3300033981	Freshwater	MPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA
Ga0335003_0149036_997_1164	3300033995	Freshwater	TGPAGLPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA
Ga0334985_0420723_565_759	3300034018	Freshwater	MDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTT
Ga0335027_0666890_1_120	3300034101	Freshwater	ALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0335035_0541402_471_626	3300034105	Freshwater	GLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0335036_0092490_1_186	3300034106	Freshwater	PIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQT
Ga0335060_0269856_2_154	3300034122	Freshwater	LPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0335039_0593939_317_511	3300034355	Freshwater	MDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA
Ga0335048_0390896_565_690	3300034356	Freshwater	ITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters