Metagenome / Metatranscriptome Family F088490

Basic Information
Family ID	F088490
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	LIESLQDEVKELSLRTLIQVTKIRKSAGANWKELAEYAICG
Number of Associated Samples	100
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.92 %
% of genes from short scaffolds (< 2000 bps)	0.92 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (21.101 % of family members)
Environment Ontology (ENVO)	Unclassified (72.477 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (68.807 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.07% β-sheet: 0.00% Coil/Unstructured: 44.93%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13392	HNH_3	8.26
PF07460	NUMOD3	1.83
PF08406	CbbQ_C	1.83
PF13671	AAA_33	0.92
PF10902	WYL_2	0.92
PF00149	Metallophos	0.92
PF01145	Band_7	0.92
PF07728	AAA_5	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0714	MoxR-like ATPase	General function prediction only [R]	1.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300003393\|JGI25909J50240_1048990	Not Available	882	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	90.83%
Marine	Environmental → Aquatic → Marine	9.17%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	44.04%
Lake	Environmental → Aquatic → Freshwater → Lake	32.11%
Lotic	Environmental → Aquatic → Freshwater → Lotic	6.42%
Coastal	Environmental → Aquatic → Marine → Coastal	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.67%
River	Environmental → Aquatic → Freshwater → River	2.75%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Ice	Environmental → Aquatic → Freshwater → Ice	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	32.11%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	32.11%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	8.26%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.67%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.75%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.75%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	21.10%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	15.60%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.09%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.17%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	8.26%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.59%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	4.59%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.59%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.67%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.75%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.75%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.92%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.92%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.92%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001839	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3b	Environmental	Open in IMG/M
3300001843	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b	Environmental	Open in IMG/M
3300001847	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a	Environmental	Open in IMG/M
3300001850	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300004686	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2)	Environmental	Open in IMG/M
3300004694	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (version 2)	Environmental	Open in IMG/M
3300004765	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300006072	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09	Environmental	Open in IMG/M
3300006100	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006112	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08	Environmental	Open in IMG/M
3300006116	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09	Environmental	Open in IMG/M
3300006120	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006863	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007562	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009684	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300012000	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A	Environmental	Open in IMG/M
3300012664	Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17	Environmental	Open in IMG/M
3300012779	Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020539	Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020727	Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion	Environmental	Open in IMG/M
3300021131	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion	Environmental	Open in IMG/M
3300021137	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300024356	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d	Environmental	Open in IMG/M
3300025358	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025366	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025389	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025407	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025413	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025420	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08 (SPAdes)	Environmental	Open in IMG/M
3300025424	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07 (SPAdes)	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025785	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025838	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)	Environmental	Open in IMG/M
3300026473	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d	Environmental	Open in IMG/M
3300027125	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8h	Environmental	Open in IMG/M
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027744	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)	Environmental	Open in IMG/M
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300028392	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)	Environmental	Open in IMG/M
3300028393	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032665	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007	Environmental	Open in IMG/M
3300032676	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M
3300032753	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034018	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034063	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034272	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM40_10925411	3300001839	Marine Plankton	SLQDKVKELTLRTLIQVTVIRKGLSANWKNLAEYAICG*
RCM34_11471311	3300001843	Marine Plankton	FEVSHKKDAMNLIEKLAESVKELSLRTLIQVVKIRKSNPNNRWTKLAEYAICG*
RCM41_10058406	3300001847	Marine Plankton	DKVKELTLRTLIQVTVIRKGLSANWKNLAEYAICG*
RCM37_10357581	3300001850	Marine Plankton	MPEFSKSLKTDALDLISSLADKVKDLSLRTLIQVTKIRKSSGANWRDLAEYAICG*
RCM31_103670941	3300001851	Marine Plankton	KDLSLRTLIQVTKIRKANPNGNWKDLASYAICGG*
JGI25908J49247_100530211	3300003277	Freshwater Lake	EFDKTIKADAMSLIERLQDSVKELSLRTLIQVTKIRQGAGKNWANLAEYTICG*
JGI25910J50241_100869361	3300003388	Freshwater Lake	MSLIERLQDKVKELSLRTLIQVTKIRESAGKNWSNLAEYTICG*
JGI25910J50241_101062691	3300003388	Freshwater Lake	MSLIERLQDKVKELSLRTLIQVTKIRESAGKNWFNLAEYTICG*
JGI25909J50240_10489901	3300003393	Freshwater Lake	XSLIERLQDKVKELSLRTLIQVTKIRESAGKNWSNLAEYTICG*
JGI25911J50253_101069611	3300003411	Freshwater Lake	KTVKADAMDLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0065173_11040582	3300004686	Freshwater	HKVDALNLIDKLRDRVKELSLRTLIQVTKIRKSAGSNWANLAEYSICG*
Ga0065170_10228994	3300004694	Freshwater	LIESLQDEVKELSLRTLIQVTKIRKSAGANWKELAEYAICG*
Ga0007745_10054344	3300004765	Freshwater Lake	LIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0007854_102258061	3300004806	Freshwater	ISTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0049081_103079921	3300005581	Freshwater Lentic	KADAMSLIERLQDKVKELSLRTLIQVTKIRESAGKNWSNLAEYTICG*
Ga0007881_10140651	3300006072	Freshwater	AMNLIDTLCDKVKDLSLRTLIQVTKIRRNGGDWKNLAEYAICG*
Ga0007806_10094709	3300006100	Freshwater	CDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0007882_101747743	3300006104	Freshwater	DAMNLIDTLCDKVKDLSLRTLIQVTKIRKNGGDWKDLAEYAIVG*
Ga0007882_102272541	3300006104	Freshwater	LCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0007862_10514701	3300006108	Freshwater	IDTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0007857_10644692	3300006112	Freshwater	NLIDTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0007807_10751952	3300006116	Freshwater	LDLIDEVKDSVKELSLRTLIQVLKIRTSVTHDWKSLAEYAICG*
Ga0007867_10446111	3300006120	Freshwater	DTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG*
Ga0075464_109695011	3300006805	Aqueous	LKDKVKELSLRTLIQVTKIRKGAGTNWKNLAEYATCG*
Ga0075464_110970441	3300006805	Aqueous	TKQEKLDALELIDDIQDGVKELSLRTLIQATKIRKSAGAKWKDLAEYTICG*
Ga0075459_10454151	3300006863	Aqueous	SFMPDVAKTVKQDALDLIASVVDSVKDLSLRTLIQVTKIRKSAGANWKDLAEYTICG*
Ga0075458_100202051	3300007363	Aqueous	FMPDVAKTVKQDALDLIASVVDSVKDLSLRTLIQVTKIRKSAGANWKDLAEYTICG*
Ga0102915_12697341	3300007562	Estuarine	LNLIASLADSVKELSLRTLIQVTKIRKANPNNNWKDLAEYAICG*
Ga0114340_11625233	3300008107	Freshwater, Plankton	EKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0114340_11950423	3300008107	Freshwater, Plankton	QDAVKELSLRTLIQVTKIRQSAGKNWANLAEYTICG*
Ga0114880_11089671	3300008450	Freshwater Lake	DNLQDDVKELSLRTLIQTTKIRKSAGAKWKDLAEYTICG*
Ga0114963_106482501	3300009154	Freshwater Lake	LKDSIKELSLRTLIQVAKIRKSNPNNNWKNLAEYAICG*
Ga0114978_103061014	3300009159	Freshwater Lake	EFMPEYTMQHKTDALNLIDELCDKVKELSLRTLIQVTKIRKSAGSNWKNLAEYAICG*
Ga0114978_106954641	3300009159	Freshwater Lake	QKTFMPEYSMTHKVEALLLIQKLADSVKELSLRTLIQVTKIRKSSPSANWKDLAEYTICG
Ga0114970_100989451	3300009163	Freshwater Lake	DKAKELTLRTLVQATNIRQNGGANWKDLAEYAICG*
Ga0105097_107287843	3300009169	Freshwater Sediment	MVDYSKEEKTDALNLIDDKQNEVKELSLRTLIQTTKIRKSAGAKWKDLAEYTICG*
Ga0114959_100256108	3300009182	Freshwater Lake	MDLIEKHQDSVKELSLRTLIQVTKIRQSAGKNWSDLAEYTICG*
Ga0114959_101024783	3300009182	Freshwater Lake	SSLVNEVKELSLRSLIQVTKIRAANPNGRWKELATYALCG*
Ga0114976_104349743	3300009184	Freshwater Lake	LVSKNDALNLIASLADTVKELSLRTLIQVTKIRKANPNNNWKDLAEYAICG*
Ga0114958_106351642	3300009684	Freshwater Lake	KDKEFMPEYSSTLKSDAINLIESVCDDVKELTLRTLIQVVKIRKSAGSNWRNLATYAICG
Ga0136644_100518401	3300010334	Freshwater Lake	SIRDEVKELSLRTLIQVVKIRKSNPNNNWKDLATYAIAG*
Ga0136644_103307204	3300010334	Freshwater Lake	DLIEKHQDSVKELSLRTLIQVTKIRQSAGKNWSDLAEYTICG*
Ga0129333_107691342	3300010354	Freshwater To Marine Saline Gradient	LIESVKDKVKELSLRTLIQVVKIRKGAGPNWKNLAEYTICG*
Ga0133913_121736871	3300010885	Freshwater Lake	QDSVKELSLRTLIQVTKIRKANANNNWENLAEYVLTN*
Ga0139557_10901703	3300011010	Freshwater	DAMNLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0139556_10241291	3300011011	Freshwater	VKADAMDLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0151620_10091782	3300011268	Freshwater	MDLIEKHQDTVKELSLRTLIQVTKIRQSAGKNWADLAEYAICG*
Ga0119951_10410471	3300012000	Freshwater	TVKADAMNLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG*
Ga0157497_10203034	3300012664	Freshwater	DDVKELSLRTLIQVTKIRSSAGSNWKNLAEYTICG*
Ga0138284_12073254	3300012779	Freshwater Lake	PDFDLVSKNDALNLIASLADSVKELSLRTLIQVTKIRKANPNNNWKDLAEYAICG*
Ga0181343_11294353	3300017766	Freshwater Lake	LIGGLVDKVKELSLRTLIQVTKIRKSAGPRWKDLAEYAIVG
Ga0181348_11751591	3300017784	Freshwater Lake	LQDKVKELSLRTLIQVTKIRESAGKNWSNLAEYTICG
Ga0211732_11945131	3300020141	Freshwater	EKSDALDMIETLQDEVKELSLRTLIQTTKIRKSAGAKWKDLAEYTICG
Ga0211726_1015554313	3300020161	Freshwater	DALDLINSVRDSVKELSLRTLIQVTKIRKSTVSNWKDLAEYTICG
Ga0211729_105896183	3300020172	Freshwater	DSVKELSLRTLIQVTKIRKSTVSNWKDLAEYTICG
Ga0207941_10224414	3300020539	Freshwater	MPEFDKVVKTDAMNLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG
Ga0214246_10636141	3300020727	Freshwater	DLIAELCDNVKELSLRTLIQVTKIRKSAGANWKDLAEYAIVG
Ga0214206_10247804	3300021131	Freshwater	LIDSLCDSVKELSLRTLIQVIKVRKSAGSNWKNLAEYAICG
Ga0214165_10720651	3300021137	Freshwater	VQDRVKELSLRSLIQCTKIRKSGVANWKDLAEYALCG
Ga0214192_11054533	3300021142	Freshwater	DKVKELSLRTLIQVTKIRKSNPNGNWKNLAEYTICG
Ga0222713_101700341	3300021962	Estuarine Water	LIENLKDSVKELSLRTLIQVTKIRANAGANWANLAEYTIAG
Ga0181351_11572751	3300022407	Freshwater Lake	ERMQYLLDQPGFMADYPKSFKQDALDLINSVRDSVKELSLRTLIQVTKIRKSSVTNWKDLAEYTICG
Ga0244775_110556774	3300024346	Estuarine	PKSHKQDALDLINSVRDSVKELSLRTLIQVTKIRKSTVSNWKDLAEYTICG
Ga0244776_108776693	3300024348	Estuarine	DSVKELSLRTLIQVTKIRKANPNNNWKDLAEYAICG
Ga0255169_10170516	3300024356	Freshwater	EANNQHKVDAIGLIEKLQDTVKELSLRTLIQVTKIRANAGANWANLAEYAICG
Ga0208504_10108211	3300025358	Freshwater	STLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0208505_10233861	3300025366	Freshwater	MDLISDLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0208250_10194591	3300025383	Freshwater	IDTVCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0207959_10584041	3300025387	Freshwater	PEYDKQVKQDAMNLIDNVKDKVKELSLRTLIQVTKIRKSGGANWANLAEYTICG
Ga0208257_10589443	3300025389	Freshwater	NVKDKVKELSLRTLIQVTKIRKSGGANWANLAEYTICG
Ga0208387_10304533	3300025400	Freshwater	VDALNLIDKLRDRVKELSLRTLIQVTKIRKSAGANWANLAEYSICG
Ga0208378_10780122	3300025407	Freshwater	MNLIDTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0208614_10361683	3300025413	Freshwater	CDKVKDLSLRTLIQVTKIRRNGGDWKNLAEYAICG
Ga0208111_10209001	3300025420	Freshwater	MGLIEKVANKVKELSLRTLIQVVKIRNSNPNGRWAKLAEYAICG
Ga0208617_10541361	3300025424	Freshwater	SKLVDSVKELSLRTLIQVTKIRKSNPNGKWKDLATYAICG
Ga0208147_10133331	3300025635	Aqueous	FMPDVAKTVKQDALDLIASVVDSVKDLSLRTLIQVTKIRKSAGANWKDLAEYTICG
Ga0208498_10457762	3300025785	Freshwater	LDLIDEVKDSVKELSLRTLIQVLKIRTSVTHDWKSLAEYAICG
Ga0208872_11655361	3300025838	Freshwater	MDLISTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0255166_10911921	3300026473	Freshwater	ADAMSLIERLQDQVKELSLRTLIQVTKIRQSAGKNWANLAEYTICG
Ga0255106_10392631	3300027125	Freshwater	FDKVIKTDAMNLIEKHQDTVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG
Ga0209188_10402341	3300027708	Freshwater Lake	DLIDKLKDSIKELSLRTLIQVAKIRKSNPNNNWKNLAEYAICG
Ga0209085_13301451	3300027741	Freshwater Lake	LKDSIKELSLRTLIQVAKIRKSNPNNNWKNLAEYAICG
Ga0209355_11860984	3300027744	Freshwater Lake	EFDKVVKTDAMNLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG
Ga0209084_11852513	3300027749	Freshwater Lake	KNDAMSLIDKLQDKVKELSLRTLIQVTKIRKSAGSNWSNLAEYTICG
Ga0209768_104119873	3300027772	Freshwater Lake	PEFSKPIKEEAMALIERLQDKVKELSLRTLIQVTKIRQSAGKNWANLAEYTICG
Ga0209777_111430971	3300027896	Freshwater Lake Sediment	VDEVKELSLRTLIQVTKIRKANPNGNWKNLAEYAICG
Ga0304729_11500701	3300028392	Freshwater Lake	ESVCDDVKELTLRSLIQVVKIRKSAGSNWRNLATYAICG
Ga0304728_12057501	3300028393	Freshwater Lake	KVKELSLRTLMQVIKIRKANPNGKWKDLAEYAICG
Ga0315909_101789511	3300031857	Freshwater	DSVKELSLRTLIQVTKIRKSAGSNWRNLAEYTICG
Ga0315909_102864495	3300031857	Freshwater	MNLIDSLKDSVKELSLRTLIQVTKIRKSAGSNWRNLAEYTICG
Ga0315905_109604794	3300032092	Freshwater	LIERLQDSVKELSLRTLIQVTKIRQSAGKNWANLAEYTICG
Ga0315903_107575091	3300032116	Freshwater	LIDDVKDRVRELSLRSLIQCTKIRKANPNGNWKQLAEFALCG
Ga0316226_13357723	3300032562	Freshwater	DALDLIAGVVDEVKELSLRTLIQVTKIRKSNPNGNWKNLAEYAICG
Ga0316221_100464926	3300032665	Freshwater	DALNLIDKLRDRVKELSLRTLIQVTKIRKSAGSNWANLAEYSICG
Ga0316229_11387134	3300032676	Freshwater	DTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0316229_12830621	3300032676	Freshwater	FMPEFDMAQKIDALNLIDKLRDRVKELSLRTLIQVTKIRKSAGSNWANLAEYSICG
Ga0316227_11077981	3300032677	Freshwater	NLIDKVADKVKELSLRTLIQVTKIRKSNPNGNWKNLAEYTICG
Ga0316231_11348934	3300032722	Freshwater	VCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0316224_10573988	3300032753	Freshwater	DAMNLIDTLCDKVKDLSLRTLIQVTKIRKNGGDWKNLAEYAICG
Ga0334982_0350914_494_664	3300033981	Freshwater	MPEYPRAMKLDALNLIDSLRDNVKEMSLRTLIQVTKIRKANPNGKWKSLAEYTICG
Ga0334979_0024529_3_149	3300033996	Freshwater	EKQDAMDLIESVKDTVKELSLRTLIQVTKIRKSAGKNWKDLAEYTVCG
Ga0334985_0612019_489_605	3300034018	Freshwater	NLQDEVKELSLRTLIQTTKIRKSAGAKWKDLAEYTICG
Ga0334995_0193281_1225_1422	3300034062	Freshwater	MQYLLDQPGFMADYPKSFKQDALDLINSVRDSVKELSLRTLIQVTKIRKSSVTNWKDLAEYTICG
Ga0335000_0334492_14_181	3300034063	Freshwater	MADYPKSFKQDALDLINSVRDSVKELSLRTLIQVTKIRKSSVTNWKDLAEYTICG
Ga0335012_0005845_7288_7455	3300034093	Freshwater	MPEFDKTIKADAMGLIERLQDSVKELSLRTLIQVTKIRQGAGKNWANLAEYTICG
Ga0335030_0156713_1_153	3300034103	Freshwater	KSFKQDALDLINSVRDSVKELSLRTLIQVTKIRKSSVTNWKDLAEYTICG
Ga0335035_0552672_3_131	3300034105	Freshwater	DLIDNLQDEVKELSLRTLIQTTKIRKSAGAKWKDLAEYTICG
Ga0335049_0669729_3_131	3300034272	Freshwater	NLIEKHQDSVKELSLRTLIQVTKIRQGAGKNWSDLAEYAICG
Ga0335007_0080152_1_141	3300034283	Freshwater	DALNLIDDVKDRVRELSLRSLIQCTKIRKSNPNGNWKQLAEFALCG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088490

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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