NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088460

Metagenome Family F088460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088460
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 59 residues
Representative Sequence GVEIWTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA
Number of Associated Samples 96
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.75 %
% of genes from short scaffolds (< 2000 bps) 2.75 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.248 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(7.339 % of family members)
Environment Ontology (ENVO) Unclassified
(39.450 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.294 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.93%    β-sheet: 9.20%    Coil/Unstructured: 52.87%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.70
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
c.1.16.0: automated matchesd5dqpa_5dqp0.74914
d.108.1.11: Histone acyltransferase p300-liked3biya_3biy0.738
d.68.6.1: DNA-binding protein AlbAd2bkyx_2bky0.73621
d.68.6.1: DNA-binding protein AlbAd2bkya_2bky0.72799
c.1.21.0: automated matchesd6omza_6omz0.72557


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF09084NMT1 12.84
PF00199Catalase 8.26
PF04909Amidohydro_2 4.59
PF06628Catalase-rel 3.67
PF00296Bac_luciferase 2.75
PF02518HATPase_c 2.75
PF00903Glyoxalase 1.83
PF04978DUF664 1.83
PF01425Amidase 1.83
PF13185GAF_2 0.92
PF03450CO_deh_flav_C 0.92
PF01476LysM 0.92
PF12867DinB_2 0.92
PF10282Lactonase 0.92
PF12681Glyoxalase_2 0.92
PF02776TPP_enzyme_N 0.92
PF02780Transketolase_C 0.92
PF01979Amidohydro_1 0.92
PF13379NMT1_2 0.92
PF13426PAS_9 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 12.84
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 12.84
COG0753CatalaseInorganic ion transport and metabolism [P] 11.93
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 2.75
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 1.83


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.25 %
All OrganismsrootAll Organisms2.75 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004463|Ga0063356_102055797All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300018031|Ga0184634_10369497All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium657Open in IMG/M
3300032180|Ga0307471_101309438All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium887Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.34%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.34%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.42%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.50%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.59%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.67%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs1.83%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.83%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.83%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.83%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.92%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.92%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.92%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.92%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.92%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.92%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.92%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.92%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300003987Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009053Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009691Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2EnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011440Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2EnvironmentalOpen in IMG/M
3300011445Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2EnvironmentalOpen in IMG/M
3300012039Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012171Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2EnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012477Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610Host-AssociatedOpen in IMG/M
3300012480Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610Host-AssociatedOpen in IMG/M
3300012489Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610EnvironmentalOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012514Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510EnvironmentalOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014865Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10DEnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027636Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeqEnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027957Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1048368643300000891SoilCGPVEHCVDSVRGFIDSGVDHVTIRPIGDNLDQQFDIFLREVLPALKQVSA*
JGI10214J12806_1243072923300000891SoilQKDFTRQGVEIWTACGPVGYCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
JGI10216J12902_10252696523300000956SoilRQGVEIWTACGPVEHCVDCVRGFIDAGVDHVTIRPIGEDLNEQFHIYVEEILPGLNLVAGNAA*
JGI24751J29686_1012692933300002459Corn, Switchgrass And Miscanthus RhizosphereGHCAASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0055471_1011121323300003987Natural And Restored WetlandsGVEIWNACGPVEHCVQCVSGFIEAGVDHVTIRPVGNDLSGQFRIYLEVVLPSLQRSHST*
Ga0062593_10197477713300004114SoilPVEHCVDCLRGFIDAGVDHVAIRPIGDNLNEQFQIFLRELLPALSRTAGNRLQATR*
Ga0062589_10007543113300004156SoilKDFTRQGVEIWNACGPVEHCVNCVGDFIEAGVDHVTIRPIGDDLTEQLRIYLKEVLPALRS*
Ga0062589_10236368823300004156SoilWTACGPVEHCVDCLRGFIDAGVDHVAIRPIGDDLQEQFKIFLREVLPALSRLAGAHPQATRS*
Ga0063356_10205579713300004463Arabidopsis Thaliana RhizosphereAYYQKDFTREGVEIWTACGSVEHCVDCVSRFIEAGVDHVAIRPIGDDLNEQFGIFLGEVLPALTAVTGDGA*
Ga0062595_10023055433300004479SoilCGPVEHCVGCVKAFIDAGVDHVAIRPIGADLNAQFQTYLKDLLPALTSATEA*
Ga0062594_10004787423300005093SoilEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTANEA*
Ga0062594_10086750513300005093SoilVEIWTACGPVEHCVDCLRGFIQSGVDHIAIRPIGADLDRQFEIFLKEVIPALQGVAASI*
Ga0066388_10092809813300005332Tropical Forest SoilVEHCVRAIQNFIDAGVDHITIRPIGQNLDEQFRIYLEEILPALTQ*
Ga0070666_1089359813300005335Switchgrass RhizosphereYQKDFTRQGVEIWTACGPVGHCAASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0070666_1149139613300005335Switchgrass RhizosphereGVEIWTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0070660_10016611613300005339Corn RhizosphereCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0070659_10002732413300005366Corn RhizosphereTRQGVEIWTACGPVGYCVASVKEFIDTGVNHVAIRPIGADLNAQLRTYLDEILPALTTANEP*
Ga0070667_10060442313300005367Switchgrass RhizosphereTRQGVEIWTACGPVGYCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0070709_1170883613300005434Corn, Switchgrass And Miscanthus RhizosphereTRQGVEIWTACGPVGLCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0066689_1040748823300005447SoilCGPVEHCVDCVRGFINAGVDHVTIRPIGQDLNKQFRIYLEEVLPGLNLVAGNAA*
Ga0070706_10112985313300005467Corn, Switchgrass And Miscanthus RhizosphereVEIWNACGPVEHCIDCLRGFIDAGVGHITIRPIGHNLDEQFRIYLEEVLPGLQEKAAKAGS*
Ga0070698_10211064913300005471Corn, Switchgrass And Miscanthus RhizosphereGVEIWNACGPVEHCVECLRGFIDAGVDHITIRPIGQNLDEQLRIYLEEVLPALKSKVAKAS*
Ga0070699_10181330623300005518Corn, Switchgrass And Miscanthus RhizosphereCVRCVQEFIDAGVDHVAIRPIGEDLNAQLRIYLEEILPALNAAN*
Ga0070697_10099959823300005536Corn, Switchgrass And Miscanthus RhizosphereYYLKDFSRQGVEIWNACGPVEHCIDCLRGFIDAGVGHITIRPIGHNLDEQFRIYLEEVLPGLQEKAAKAGS*
Ga0070672_10135197923300005543Miscanthus RhizosphereCVASVKEFIDAGVNHVAIRPIGADLNAQLRTYLDEILPALTTANEP*
Ga0070696_10005697513300005546Corn, Switchgrass And Miscanthus RhizosphereCVASVKEFIDAGVNHVAIRPIGADLNAQLRTYLDEILPALMTANEP*
Ga0070693_10033881533300005547Corn, Switchgrass And Miscanthus RhizosphereTRQGVEIWTACGPVGHCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0068857_10186284633300005577Corn RhizosphereGPVGHCAASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0068856_10159421613300005614Corn RhizosphereGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTANEA*
Ga0066905_10139244413300005713Tropical Forest SoilREGVEIWNACGPVEHCVRAIQNFIDAGVDHITIRPIGQNLDKQFRIYLEEVLPALGSRS*
Ga0068866_1018610923300005718Miscanthus RhizosphereVEIWTACGPVEHCVDCLRGFIEAGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKPLSS*
Ga0066903_10716423923300005764Tropical Forest SoilSREGVEIWNACGPVEHCVRAIQNFIDAGVDHITIRPIGQKLDKQFRIYLEEVLPALGSQG
Ga0075428_10092679013300006844Populus RhizosphereKDFTREGVEIWTACGPVEHCVDCLRGFIEDGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0075421_10166840113300006845Populus RhizosphereKDFTREGVEIWTACGPVEHCVDCLRGFIAAGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0075421_10199140813300006845Populus RhizosphereYQKDFTRQGVEIWNACGPVEHCVNCVGDFIEAGVDHVTIRPIGDDLTEQLRIYLKEVLPALRS*
Ga0075430_10003270113300006846Populus RhizosphereDFTREGVEIWTACGPVEHCVDCLRGFIAAGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0075433_1085212313300006852Populus RhizosphereDFSREGVEIWNACGPVEHCVRSIQNFMDAGVDHITIRPIGQNLDEQFRIYLQEVLPALGSEG*
Ga0079219_1006469343300006954Agricultural SoilKDFTRHGVEIWTACGPVGHCVGCVKAFMDEGVDHVAIRPIGADLDAQFRIFLEEILPALNATKQG*
Ga0105095_1083900023300009053Freshwater SedimentTRQGVEIWTACGPVEHCVRCVKEFIDARVDHVAIRPIGEDLNAQFRIYLEEILPALNAANDS*
Ga0111538_1349145623300009156Populus RhizosphereDAYYQKDFTRHGVEIWTACGPVGHCVGCVKAFMDEGVDHVAIRPIGADLDAQFRIFLEEILPALNATKQG*
Ga0075423_1292552913300009162Populus RhizosphereKDFTRQGVEIWTACGPVEHCVGCVKAFIDAGVDHVAIRPIGADLNAQFQTYLKDLLPALTSATEA*
Ga0114944_123405123300009691Thermal SpringsEIWTACGPVDHCVDCVRGFIDAGVDHVTIRPIGDDLNEQLRIFLEEALPALKSVVENAA*
Ga0134111_1051502023300010329Grasslands SoilDFTRQGVEIWTACGPVEHCVDCVRGFINAGVDHVTIRPIGQDLNEQFRIYLEEVLPGLNLVAGNAA*
Ga0126376_1041301623300010359Tropical Forest SoilFSREGVEIWNACGPVEHCVRAIQNFIDAGVDHITIRPIGQNLDKQFRIYLEEVLPALGSQG*
Ga0126377_1023779313300010362Tropical Forest SoilVECVRGFVDAGVDHVTIRPIGADLNEQFRIYLKEVLPALKAVASSAT*
Ga0126377_1278091423300010362Tropical Forest SoilSREGVEIWNACGPVEHCVRSIKNFIDAGVDHITIRPIGQNLDKQFGIYLEEVLPALGSQG
Ga0134124_1050101633300010397Terrestrial SoilGVEIWTACGPVGHCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0126383_1179495513300010398Tropical Forest SoilVEIWNACGPVEHCIDCISSFIDAGVDHVTIRPIGRDLDEQFRIYLEEVLPGLQAKAAEASE*
Ga0137433_103032323300011440SoilVEIWNACGPVEHCVNTVQQFVDLGVDHITIRPIGENLDEQFRVYLEDILPALGAK*
Ga0137427_1020213733300011445SoilVEHCVDCVSRFIEAGVDHVAIRPIGDDLNEQFGIFLGEVLPALTAVAGNGA*
Ga0137421_104141923300012039SoilEIWNACGPVEHCVNTVQQFVDLGVDHITIRPIGENLDEQFRVYLEDILPALGAK*
Ga0137389_1144107813300012096Vadose Zone SoilGVEIWNACGPVEHCVECLRGFIDAGIDHITIRPLGQNLDEQLRIYLEEVLPALAGLGSGSV*
Ga0137342_114621023300012171SoilYYQKDFTRPGVEIWTACGPVEHCVDTVRGFIDAGVDHVAIRPIGDDLNEQFRIFYKNFFPH*
Ga0137369_1088868423300012355Vadose Zone SoilVEIWNACGPVEHCVDCVRGFINAGVDHITIRPIGEDLNEQFRIYLKEVLPALKSVAGNAA
Ga0157336_102034513300012477Arabidopsis RhizosphereGVEIWTACGSVEHCVDCLRGFIDAGVDHVAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0157346_103336423300012480Arabidopsis RhizosphereCGPVEHCVDCLRGFIEAGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0157349_101260923300012489Unplanted SoilVEIWTACGSVEHCVDCLRGFIDAGVDHVAIRPIGADLNQQFVIFLEKLVPALQAVTDKPLSS*
Ga0157334_105691323300012509SoilREGVEIWTACGPVEHCVDCLRGFIEAGVDHIAIRPIGADLNQQFVMFLKELIPALQAVTDKAA*
Ga0157330_104764523300012514SoilQEGVEIWTACGPVERCVDCLRGFIEAGVDHVAIRPIGADLNQQFVIFLEKLIPALQAVTHKAA*
Ga0157352_103909313300012519Unplanted SoilGVEILTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0137397_1003685743300012685Vadose Zone SoilEIWTACGPVEHCVRCVKEFIDAGVDHVAIRPIGADLNAQLRIYLEEILPALNAANEC*
Ga0137404_1097388523300012929Vadose Zone SoilPVEHCVRCVKEFIDAGVDHVAIRPIGEDLNAQFRIYLEEILPALNAANEC*
Ga0137407_1234020723300012930Vadose Zone SoilEIWTACGPVEHCVRCVKEFIDAGVDHVALRPIGEDLNAQLRIYLEEILPALNAANEC*
Ga0137407_1243269723300012930Vadose Zone SoilEHCVRSIQNFIDAGVDHITIRPIGQNLDEQFQIYLDEILPALGLEG*
Ga0137410_1029927513300012944Vadose Zone SoilRQGVEIWTACGPVEHCVRCVKEFIDAGVDHVAIRPIGADLNAQLRIYLEEILPALNAANEC*
Ga0157372_1172656213300013307Corn RhizosphereKDFTRQGVEIWTACGPVGHCAASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA*
Ga0157377_1132678313300014745Miscanthus RhizosphereDFTRQGVEIWTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0180078_101743913300014865SoilKDFSRAGVEIWNACGPVEHCVNTVQQFVDLGVDHITIRPIGENLDEQFRIYLEDILPALGAK*
Ga0180104_101173533300014884SoilEHCVDSVRGFIDAGVDHVAIRPIGADLNEQFRIFLQEVLPALHSS*
Ga0180089_100302613300015254SoilRQGVEIWTACGPVEHCVECLRGFIDAGVDHVTIRPIGEDLNEQFRIYLEDLLPALRRVGGGAA*
Ga0132256_10018581043300015372Arabidopsis RhizosphereGVEIWNACGPVEHCIRSIQNFIDAGVDHITIRPIGQNLDEQFQIYLDEILPALESK*
Ga0132256_10378046013300015372Arabidopsis RhizosphereTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEAEL*
Ga0132257_10231318713300015373Arabidopsis RhizosphereGVEIWTACGSVEHCVDCLRGFIDAGVDHVAIRPIGADLNQQFVIFLEKLIPALQAVTDKAA*
Ga0132257_10416607423300015373Arabidopsis RhizosphereCVACIKQFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0132255_10298620823300015374Arabidopsis RhizosphereVEIWNACGPVEHCIRSIQNFIDAGVDHITIRPIGQNLDEQFQIYLDEILPALESK*
Ga0132255_10492822223300015374Arabidopsis RhizosphereRQGVEIWTGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLSAQFRTYLEEILPALTTATEA*
Ga0132255_10628229013300015374Arabidopsis RhizosphereCVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA*
Ga0184634_1036949713300018031Groundwater SedimentCVDCLRGFIDAGVDHVAIRPIGDDLHAQFGIFLQELLPALTAAAGNAA
Ga0184638_110521423300018052Groundwater SedimentLKDFSREGVEIWTACGPVEHCVRSIQNFMDAGVDHITIRPIGQNLDEQFRICLDEILPSLQSEASKED
Ga0184638_132612123300018052Groundwater SedimentACGPVEHCVECLRGFIDAGVDHVTIRPIGDDLKHQFNNFLQDVVPALNSAAANAA
Ga0184621_1007218413300018054Groundwater SedimentGVEIWNACGPVEHCVDCVRGFINAGIDHVAIRPIGDNLDEQFDIYLNQILPALQQL
Ga0190270_1021256713300018469SoilFTRQGVEIWTACGPVQHCVRCVKEFIDAGVDHVAIRPIGENLNAQFRIYLEEMLPALNAANDSQ
Ga0190271_1076575513300018481SoilKDFTRQGVEIWNACGPVEHCVGSIGGFIEAGVDHVTIRPIGSDLDEQLRIYLEEVLPALH
Ga0193725_112213713300019883SoilDFTREGVEIWTACGPVERCVDCLRGFIDAGVDHVAIRPIGADLNQQFVIFLEKLVPALQAVTDKAA
Ga0193743_101453843300019889SoilVQHCVRCVKELFIDAGVDHVAIRPIGEDLNAQFRIYLEEILHALNAANDS
Ga0210379_1020676113300021081Groundwater SedimentAYYQKDFTRPGVEIWTACGPVEHCVDTVRGFIDAGVDHVAIRPIGDDLNEQFRIYLEEILPALNLAGC
Ga0212128_1025856633300022563Thermal SpringsGIEIWNACGTVEHCVSCIQTFIDAGVDHITIRPIGENLDEQLGIYLAEILPALRMLEHSDQS
Ga0207684_1133972913300025910Corn, Switchgrass And Miscanthus RhizosphereKDFSRQGVEIWNACGPVEHCIDCLRGFIDAGVGHITIRPIGHNLDEQFRIYLEEVLPGLQEKAAKAGS
Ga0207657_1045703113300025919Corn RhizosphereIWTACGPVGYCVASVKEFIDAGVNHVAIRPIGADLNAQLRTYLDEILPALMTANEP
Ga0207668_1074122133300025972Switchgrass RhizosphereGVEIWTACGPVGYCVASVKEFIDTGVNHVAIRPIGADLNAQFRTYLDEILPALTTAAIA
Ga0207658_1052279833300025986Switchgrass RhizosphereWTACGPVGHCVASVKEFINAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA
Ga0207703_1060488433300026035Switchgrass RhizosphereVGYCVASVKEFIDAGVNHVAIRPIGADLNAQFRTYLDEILPALTTATVA
Ga0207678_1020997713300026067Corn RhizosphereGCGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTANEA
Ga0207683_1095091023300026121Miscanthus RhizosphereFTRQGVEIWTACGPVGYCVASVKEFIDTGVNHVAIRPIGADLNAQLRTYLDEILPALTTANEP
Ga0209470_133026023300026324SoilCGPVEHCVDCVRGFINAGVDHVTIRPIGQDLNKQFRIYLEEILPGLN
Ga0209160_106080913300026532SoilTRQGVEIWTACGPVEHCVDCVRGFINAGVDHVTIRPIGQDLNKQFRIYLEEVLPGLNLVAGNAA
Ga0209577_1013019313300026552SoilVDCVRGFINAGVDHVTIRPIGQDLNKQFRIYLEEVLPGLNLVAGNAA
Ga0214469_109540923300027636SoilGVEIWNACGPVEHCVECVRGFIGAGVDHVTIRPIGDDLNEQLRIYLEEVLPSLSS
Ga0209466_112451713300027646Tropical Forest SoilGVEIWNACGPVDHCIDRLRGFIDAGVDHVTIRPIGDNLDTQLDVYLRQILPALRQL
Ga0209857_100184513300027957Groundwater SandYYLKDFSREGVEIWNACGPVEHCVRSLQNFIDAGVDHITIRPIGRNLDEQFRTYLEDVLPALGSVS
Ga0209857_109041713300027957Groundwater SandYYLKDFSREGVEIWNACGPVEHCVRSLQNFIDAGVDHITIRPIGQNLDEQFQIYLDEILPALQSEGL
Ga0137415_1038792923300028536Vadose Zone SoilLQSTELNVIWTACGPVEHCVDCLRGFIEAGVDHVAIRPIGADLNQQFVIFLEKLIPALQAVTDKAA
Ga0307413_1162259013300031824RhizosphereFSRQGVEIWTACGPVEHCVDCLRGFIDAGVDHVAIRPIGDDLNEQFHIFLRELIPALSRLTGSVSQATG
Ga0310917_1121025713300031833SoilGPVEHCVGCVKEFMDAGVDHVAIRPIGADLNTQFRIYLKEVLPALNSLHEG
Ga0310885_1008270113300031943SoilQKDFARAGVEIWTACGPVEHCVDCLRGFIEAGVDHLAIRPIGADLNQQFVMFLKELIPALQAVTDKAA
Ga0310890_1041825513300032075SoilVEIWTACGPVEHCVDCLRGFIDAGVDHVAIRPIGDDLNEQFQIFLRELIPALSRLAGSVSQTTV
Ga0307471_10130943813300032180Hardwood Forest SoilWTACGPVEHCVECLRGFIDAGVDHVAIRPIGDDLNEQFEIFLRELLPGLSAVGANTA
Ga0310810_1018957023300033412SoilGPVEHCVACVKEFIDAGVDHVAIRPIGADLNAQFRTYLEEILPALTTATEA
Ga0364945_0113751_636_7973300034115SedimentWTACGPVEHCVRSMQNFIDAGVDHITVRPIGQNLDEQFRIYLDEILPALGSVS


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