Metagenome / Metatranscriptome Family F088447

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088447
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	60 residues
Representative Sequence	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRRGRSRQSGELTGTRAQ
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.40 %
% of genes near scaffold ends (potentially truncated)	22.94 %
% of genes from short scaffolds (< 2000 bps)	67.89 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.761 % of family members)
Environment Ontology (ENVO)	Unclassified (27.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.872 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.32% β-sheet: 0.00% Coil/Unstructured: 55.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00085	Thioredoxin	33.03
PF00378	ECH_1	9.17
PF13379	NMT1_2	1.83
PF06155	GBBH-like_N	0.92
PF00849	PseudoU_synth_2	0.92
PF08447	PAS_3	0.92
PF12974	Phosphonate-bd	0.92
PF03972	MmgE_PrpD	0.92
PF01053	Cys_Met_Meta_PP	0.92
PF13541	ChlI	0.92
PF07043	DUF1328	0.92
PF03861	ANTAR	0.92
PF02445	NadA	0.92
PF13335	Mg_chelatase_C	0.92
PF05698	Trigger_C	0.92
PF11737	DUF3300	0.92
PF09084	NMT1	0.92
PF01243	Putative_PNPOx	0.92
PF02627	CMD	0.92
PF00106	adh_short	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	0.92
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.92
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.92
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.92
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.92
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.92
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.92
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.92
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.92
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.92
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.92
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.92
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.92
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.92
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.92
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.92
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	0.92
COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.92
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.92
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0379	Quinolinate synthase	Coenzyme transport and metabolism [H]	0.92
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.92

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.12 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	41.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	41.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	41.28 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	41.28 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	41.28 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	41.28 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_27898	All Organisms → cellular organisms → Bacteria	4344	Open in IMG/M
3300000956\|JGI10216J12902_103807232	All Organisms → cellular organisms → Bacteria	4008	Open in IMG/M
3300003321\|soilH1_10000458	All Organisms → cellular organisms → Bacteria	10354	Open in IMG/M
3300003324\|soilH2_10138649	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300003994\|Ga0055435_10049766	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300004019\|Ga0055439_10072268	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005167\|Ga0066672_10454937	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005175\|Ga0066673_10885358	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	508	Open in IMG/M
3300005444\|Ga0070694_101954175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300005446\|Ga0066686_10122274	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300005458\|Ga0070681_10045156	All Organisms → cellular organisms → Bacteria	4409	Open in IMG/M
3300005458\|Ga0070681_10074440	All Organisms → cellular organisms → Bacteria	3357	Open in IMG/M
3300005471\|Ga0070698_100613846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1028	Open in IMG/M
3300005529\|Ga0070741_10000096	All Organisms → cellular organisms → Bacteria	326167	Open in IMG/M
3300005549\|Ga0070704_100469283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1087	Open in IMG/M
3300005554\|Ga0066661_10352011	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	902	Open in IMG/M
3300005558\|Ga0066698_10113651	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1798	Open in IMG/M
3300005569\|Ga0066705_10755391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	582	Open in IMG/M
3300005598\|Ga0066706_10132380	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300005836\|Ga0074470_10125058	All Organisms → cellular organisms → Bacteria	9229	Open in IMG/M
3300005843\|Ga0068860_100821654	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300006845\|Ga0075421_100266539	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300006845\|Ga0075421_100409360	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300006845\|Ga0075421_100971311	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300006846\|Ga0075430_100614468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	897	Open in IMG/M
3300006852\|Ga0075433_10916950	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	764	Open in IMG/M
3300006854\|Ga0075425_100095990	All Organisms → cellular organisms → Bacteria	3365	Open in IMG/M
3300006854\|Ga0075425_101907098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	666	Open in IMG/M
3300006904\|Ga0075424_102372324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
3300009012\|Ga0066710_100292505	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300009094\|Ga0111539_10402189	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300009100\|Ga0075418_10209199	All Organisms → cellular organisms → Bacteria	2077	Open in IMG/M
3300009156\|Ga0111538_11140779	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300009162\|Ga0075423_10108074	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300009176\|Ga0105242_10909058	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	881	Open in IMG/M
3300010400\|Ga0134122_11335143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	727	Open in IMG/M
3300011269\|Ga0137392_11089385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	655	Open in IMG/M
3300011435\|Ga0137426_1068723	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300011444\|Ga0137463_1059218	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300012173\|Ga0137327_1007588	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300012198\|Ga0137364_10057421	All Organisms → cellular organisms → Bacteria	2617	Open in IMG/M
3300012200\|Ga0137382_10001260	All Organisms → cellular organisms → Bacteria	11082	Open in IMG/M
3300012200\|Ga0137382_10048409	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300012203\|Ga0137399_10608833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	918	Open in IMG/M
3300012205\|Ga0137362_10594204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	955	Open in IMG/M
3300012208\|Ga0137376_11346081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	604	Open in IMG/M
3300012231\|Ga0137465_1095254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	892	Open in IMG/M
3300012355\|Ga0137369_10066189	All Organisms → cellular organisms → Bacteria	3079	Open in IMG/M
3300012503\|Ga0157313_1016166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300012685\|Ga0137397_10012764	All Organisms → cellular organisms → Bacteria	5872	Open in IMG/M
3300012929\|Ga0137404_12015649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300012944\|Ga0137410_10409678	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1094	Open in IMG/M
3300015242\|Ga0137412_10150867	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300015374\|Ga0132255_101605267	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300015374\|Ga0132255_105139279	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300017939\|Ga0187775_10217412	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300017944\|Ga0187786_10315315	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300017997\|Ga0184610_1062459	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300018027\|Ga0184605_10110279	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300018029\|Ga0187787_10221612	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300018032\|Ga0187788_10014301	All Organisms → cellular organisms → Bacteria	2476	Open in IMG/M
3300018053\|Ga0184626_10022699	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300018056\|Ga0184623_10156436	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1053	Open in IMG/M
3300018061\|Ga0184619_10458710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300018063\|Ga0184637_10022588	All Organisms → cellular organisms → Bacteria → Proteobacteria	3793	Open in IMG/M
3300018064\|Ga0187773_10490947	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	730	Open in IMG/M
3300018071\|Ga0184618_10000537	All Organisms → cellular organisms → Bacteria	8796	Open in IMG/M
3300018078\|Ga0184612_10050424	All Organisms → cellular organisms → Bacteria	2168	Open in IMG/M
3300018084\|Ga0184629_10004286	All Organisms → cellular organisms → Bacteria	5321	Open in IMG/M
3300018089\|Ga0187774_10067679	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300018422\|Ga0190265_10040065	All Organisms → cellular organisms → Bacteria	3988	Open in IMG/M
3300018422\|Ga0190265_10995145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	960	Open in IMG/M
3300018429\|Ga0190272_11048969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	784	Open in IMG/M
3300018429\|Ga0190272_12820516	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300018466\|Ga0190268_10156903	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300018481\|Ga0190271_10157160	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300018481\|Ga0190271_10376211	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300018482\|Ga0066669_10521827	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1031	Open in IMG/M
3300018482\|Ga0066669_11144998	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	702	Open in IMG/M
3300019878\|Ga0193715_1006987	All Organisms → cellular organisms → Bacteria	2411	Open in IMG/M
3300019879\|Ga0193723_1162557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300019881\|Ga0193707_1046171	Not Available	1396	Open in IMG/M
3300019882\|Ga0193713_1015627	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300021082\|Ga0210380_10089766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1352	Open in IMG/M
3300022534\|Ga0224452_1113375	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	832	Open in IMG/M
3300022756\|Ga0222622_10783349	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	696	Open in IMG/M
3300025580\|Ga0210138_1018134	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300025912\|Ga0207707_10035227	All Organisms → cellular organisms → Bacteria	4377	Open in IMG/M
3300025912\|Ga0207707_10050037	All Organisms → cellular organisms → Bacteria	3641	Open in IMG/M
3300025930\|Ga0207701_10024271	All Organisms → cellular organisms → Bacteria	5782	Open in IMG/M
3300025934\|Ga0207686_10710178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300025934\|Ga0207686_11049054	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300026285\|Ga0209438_1063473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1214	Open in IMG/M
3300026304\|Ga0209240_1132849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	824	Open in IMG/M
3300027573\|Ga0208454_1000683	All Organisms → cellular organisms → Bacteria	17472	Open in IMG/M
3300027862\|Ga0209701_10155640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1392	Open in IMG/M
3300027907\|Ga0207428_10313129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1160	Open in IMG/M
3300027909\|Ga0209382_10373838	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300027909\|Ga0209382_10659804	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300028802\|Ga0307503_10704814	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300031231\|Ga0170824_115722304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	759	Open in IMG/M
3300031716\|Ga0310813_10042140	All Organisms → cellular organisms → Bacteria	3312	Open in IMG/M
3300032075\|Ga0310890_11461228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300033004\|Ga0335084_11371298	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	702	Open in IMG/M
3300033433\|Ga0326726_10059212	All Organisms → cellular organisms → Bacteria	3362	Open in IMG/M
3300034150\|Ga0364933_140873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300034417\|Ga0364941_069480	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	815	Open in IMG/M
3300034667\|Ga0314792_053834	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300034671\|Ga0314796_063815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	731	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.82%
Host-Associated	Host-Associated	20.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.55%
Plants	Host-Associated → Plants	20.18%
Aquatic	Environmental → Aquatic	19.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.51%
Sediment	Environmental → Aquatic → Sediment	15.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.67%
Marine	Environmental → Aquatic → Marine	2.75%
Floodplain	Environmental → Terrestrial → Floodplain	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.60%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.42%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.75%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.50%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_00070810	2199352025	Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAQ
JGI10216J12902_1038072323	3300000956	Soil	MLSWELIFRQSRVNLGGYDGDQLPPQNWHWPRDTWFQTRLRHLRTGRGGYTEALAHQRWQ
soilH1_1000045816	3300003321	Sugarcane Root And Bulk Soil	MSNWQLIFRQSRVNEGIYYGDRLPGNNWQWPQGTWLQTRLRTMRSGLRRKAAEAASTRNGAFER*
soilH2_101386494	3300003324	Sugarcane Root And Bulk Soil	MSNWQLIFRQSRVNEGIYYGDRLPGNNWQWPQGTWLQTRLRSMRSGLGRKAAEAASTRNGAFAR*
Ga0055435_100497661	3300003994	Natural And Restored Wetlands	MNPWELIFRQSRVNRGNYDGDRLSAHNWAWPQQTWFQTRLRYLRKGRARYSRGLPED
Ga0055439_100722682	3300004019	Natural And Restored Wetlands	MTMNPWELIFRQSRVNRGNYDGDRLSAHNWAWPQQTWFQTRLRYLRKGRARYSRGLPED*
Ga0066672_104549371	3300005167	Soil	MNSWELIFRQSRVNHGTYNGDRLLGQNWRWPEGTWFQSRLRYLRQGRGRYSGELNGERAR
Ga0066673_108853582	3300005175	Soil	ELIFRQSRVNHGTYNGDRLLGQNWRWPEGTWFQSRLRYLRQGRGRYSGELNGERAR*
Ga0070694_1019541751	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MNSWELIFRVSKVAGAGYDENRLPVQNWEWPQGTWFQRRLRYLRNGHGKYTKALAGETRH
Ga0066686_101222744	3300005446	Soil	MAMNAWELIFRQSRVNNGAYDGDELPRQNWAWPRGTWFQRRLRYLRRGSGKYSTELAKGRLQ*
Ga0070681_100451562	3300005458	Corn Rhizosphere	MSTWQLIFRQSRVNDGVYYGDRLPGHNWQWPQGTWLQSRLRYTRRGLGRKSAEAAATHRGAFER*
Ga0070681_100744405	3300005458	Corn Rhizosphere	MSTWQLIFRQSRVNDGIYYGDRLPGQNWRWPQGTWLQTRLRSMRRELGRKAAEAAATRSGAFER*
Ga0070698_1006138462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGHSQ
Ga0070741_10000096201	3300005529	Surface Soil	MNSWELIFRQSRVNDGIYYGDRLPGQNWQWPQGTWLQTRLRYLRRGLGRKSAGAPEADGSRTAG*
Ga0070704_1004692833	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTSWELIFRQSRVNSDDYDGDQLPAQNWHWPQGTWFQTRLRYLRNGYGRYTRALPEERSL
Ga0066661_103520113	3300005554	Soil	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRCAGESIGGRSQ
Ga0066698_101136514	3300005558	Soil	MNAWELIFRQSRVNNGAYDGDELPRQNWAWPRGTWFQRRLRYLRRGSGKYSTELAKGRLQ
Ga0066705_107553912	3300005569	Soil	MNSWELIFRQSRVNHGTYNGDRLLGQNWRWPEGTWFQSRLRYLRQGAGRYSSELNGERAR
Ga0066706_101323801	3300005598	Soil	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGESIGGRSQ
Ga0074470_101250588	3300005836	Sediment (Intertidal)	MNSWEVIFRVSKVNGGNYDEDLLPVQKWEWPRGTWFQRRLRHLRNGYGRYPLTQANQPCH
Ga0068860_1008216541	3300005843	Switchgrass Rhizosphere	IFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAQ*
Ga0075421_1002665393	3300006845	Populus Rhizosphere	MNSWELIFRQSRVNSASYDGDQLVAQNWDWPRGTWFQRRLRYLRNGYGRYTRALPEER*
Ga0075421_1004093603	3300006845	Populus Rhizosphere	MNSWELVFRQSRVNLGSYDGDRLPAQNWHWPRDTWFQRRLRQLRNGRGRYFGALPQERWQ
Ga0075421_1009713111	3300006845	Populus Rhizosphere	MNSWELIFRQSRVNSDSYDVDQLPAQIWDWPRGTWFQRRLRYLRNGYGRYT
Ga0075430_1006144682	3300006846	Populus Rhizosphere	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELIGTRAQ
Ga0075433_109169503	3300006852	Populus Rhizosphere	GNFAMNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRS*
Ga0075425_1000959905	3300006854	Populus Rhizosphere	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRS*
Ga0075425_1019070982	3300006854	Populus Rhizosphere	MKSWELIFRQSRVNKGVYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQFGELTGTRAQ
Ga0075424_1023723242	3300006904	Populus Rhizosphere	MKSWELIFRQSRVNNGTYDGDRLPGQNWQWPQDTWLQTRLRYLRRGRGRQSGELADARAR
Ga0066710_1002925057	3300009012	Grasslands Soil	MAMNAWELIFRQSRVNNGAYDGDKLPRQNRAWPRGTWFQRRLRYLRRGSGKYSTELAKGRLQ
Ga0111539_104021893	3300009094	Populus Rhizosphere	VCREKFARVKTLDYPPMRRFAMKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQFGELTGTRAQ*
Ga0075418_102091993	3300009100	Populus Rhizosphere	VRPEKFARVKTIDYPSMRRFAMKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQFGELTGTRAQ*
Ga0111538_111407793	3300009156	Populus Rhizosphere	MKSWELIFRQSRVNNGTYDGDRLPGQNWQWPQDTWLQTRLRYLRHGRSRQSGELTGTRAQ
Ga0075423_101080747	3300009162	Populus Rhizosphere	MTSWELIFRQSKVNSDDYDGDQLPAQNWHWPQGTWFQTRLRYLRNGYGRYTRALPEERSL
Ga0105242_109090582	3300009176	Miscanthus Rhizosphere	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAH
Ga0134122_113351431	3300010400	Terrestrial Soil	RRGDTRMNSWELIFRASKVNGDSYDEDRLPVQNWEWPRGTWFQRRLRYLRNGYGRDTTRRVDEAWQ*
Ga0137392_110893852	3300011269	Vadose Zone Soil	TQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRSQ*
Ga0137426_10687233	3300011435	Soil	MNSWELIFRQSRVNLGSYDGDRLPAQNWHWPRGTSFQRRLRHLRNGTGRY
Ga0137463_10592183	3300011444	Soil	MDTWELIFRQSRVNSGSYDGDQLPAQNWDWPRGTWFQTRLRHLRNGSRRYTRALPEERWQ
Ga0137327_10075882	3300012173	Soil	MNSWELIFRQSRVNLGSYDGDRLPAQNWHWPRGTWFQRRLRHLRNGTGRYSKALPEERWQ
Ga0137364_100574215	3300012198	Vadose Zone Soil	MAMNAWELIFRQSRVNNGAYDGDKLPRQNRAWPRGTWFQRRLRYLCRGRGKYSTEFAKGSLQ*
Ga0137382_100012605	3300012200	Vadose Zone Soil	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRDAGELIGGRSQ
Ga0137382_100484094	3300012200	Vadose Zone Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRRGRSRQSGELTGTRAQ
Ga0137399_106088333	3300012203	Vadose Zone Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRRGRSRQSGELT
Ga0137362_105942042	3300012205	Vadose Zone Soil	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELISGRSQ
Ga0137376_113460812	3300012208	Vadose Zone Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSSELTGTRAQ
Ga0137465_10952543	3300012231	Soil	MNSWELIFRQSRVNSASYDGDQLVAQNWDWPRGTWFQRRLRYLRNGYGRHTR
Ga0137369_100661895	3300012355	Vadose Zone Soil	MAMNAWELIFRQSRVNNGAYDGDELPPQNWAWPQGTWFQRRLRYLRLGSANIPEN*
Ga0157313_10161662	3300012503	Arabidopsis Rhizosphere	MVDHPSMRRFAMKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAQ*
Ga0137397_1001276410	3300012685	Vadose Zone Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRYGRSRQSGELTGTRAQ
Ga0137404_120156492	3300012929	Vadose Zone Soil	IFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRRGRSRQSGELTGTRAQ*
Ga0137410_104096781	3300012944	Vadose Zone Soil	FAMNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGESIGGRSQ*
Ga0137412_101508673	3300015242	Vadose Zone Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRRGRSRQSGELTGTPAQ
Ga0132255_1016052671	3300015374	Arabidopsis Rhizosphere	MKSWELIFRQSRVNNGVYDGDRLPGQNWQWPQGTWLQTRLRYLRHCRSRQSGELTGTRAQ
Ga0132255_1051392791	3300015374	Arabidopsis Rhizosphere	PSMRRFAMKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTATRAQ*
Ga0187775_102174123	3300017939	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLHPANWLWPRDTWFQKRLHYLRFGNGRYGKT
Ga0187786_103153152	3300017944	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLPAANWLWPRDTWFQKRLRYLRFGNGRFGKTQDEKVWH
Ga0184610_10624593	3300017997	Groundwater Sediment	MATNAWELIFRQSRVNNGAYDGEQLPAQNWNWPRGTWFQRRLRYLRRGNKYSRELAKQDL
Ga0184605_101102793	3300018027	Groundwater Sediment	MNAWELIFRQSRVNNGAYDGDELPPQIWAWPRGTWFQRRLRYLRRGSGKYSRELAKGSLQ
Ga0187787_102216122	3300018029	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLPAANWLWPRDTWFQKRLHYLRFGNGRYGKTQGEKVWH
Ga0187788_100143015	3300018032	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLPAANWLWPRDTWFQNRLHYLRFGNGRYGKTQDEKVWH
Ga0184626_100226993	3300018053	Groundwater Sediment	MNSWELIFRQSRVNSDSYDGDQLPAQNWDWPRGTWFQERLRHLRNGRGRYTRALPEERWQ
Ga0184623_101564363	3300018056	Groundwater Sediment	MNSWELIFRQSRVNLGSYDGDQLPAQNWDWPRGTWFQERLRHLRNGNGRYTRALPEERWQ
Ga0184619_104587101	3300018061	Groundwater Sediment	SERGGNFAMNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRSQ
Ga0184637_100225885	3300018063	Groundwater Sediment	MNSWELIFRQSRVNSDSYDGNQLPAQNWEWPRGTWFQRRLRYLRNGYGRYTRALPEERWQ
Ga0187773_104909472	3300018064	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLPAANWLWPRDTWFQNRLRYLRFGNGRYGKTQDEKVWH
Ga0184618_100005379	3300018071	Groundwater Sediment	MATNAWELIFRQSRVNNGAYDGEQLPTQNWNWPRGTWFQRRLRYLRRGNKYSRELAKQDL
Ga0184612_100504245	3300018078	Groundwater Sediment	MNSWELIFRQSRVNLGSYDGDQLPAQNWDWPRGTWFQTRLRHLRNGRGRYTRALPEERWQ
Ga0184629_100042863	3300018084	Groundwater Sediment	MNSWELIFRQSRVNLGSYDGDRLPAQNWHWPRGTWFQRRLRYLRNGTGRYSKALPEERWQ
Ga0187774_100676794	3300018089	Tropical Peatland	MNPWELVFRQSRVNNGSYDGDRLHAANWLWPRDTWFQKRLHYLRFGNGRYGKTQGEKVWH
Ga0190265_100400656	3300018422	Soil	MAMNAWELIFRQSRVNNGAYDGDELPRQNWAWPRGTWFQRRLRYLRRGSGKYSTELAKGSLQ
Ga0190265_109951451	3300018422	Soil	MNPWELIFRQSKVNLGGYAGDQLPPQNWHWPRGTWFQTRLHHLRTDGGYFRALAHEQWQ
Ga0190272_110489691	3300018429	Soil	MNPWELIFRQSRVNLCGYDGDQLPPQNWHWPRGTWFQTRLRHLRTGRGGYTRALAHEQWQ
Ga0190272_128205162	3300018429	Soil	MNSWELIFRQSRVNLGGYDGNRLPPQNWHWPRGTWFQTRLRHLRTGRGGYSRA
Ga0190268_101569033	3300018466	Soil	MLSWELIFRQSRVNLGGYDGDQLPPQNWHWPRDTWFQTRLRHLRTGRGGYTGALAHERWQ
Ga0190271_101571604	3300018481	Soil	MNSWETIFRQRKVNSGSYDGEKLPAWIWDWPRGTWFQRRLRSLRNGYSRYGRAPAQERLQ
Ga0190271_103762115	3300018481	Soil	MNSWETIFRQSRVNSGSYDGEQLPARIWDWPRGTWFQRRLRYLRSDYGRYGRGPARERLQ
Ga0066669_105218274	3300018482	Grasslands Soil	MHSWELIFRQSRVNHGSYNGDRLLGQNWRWPEGTWFQSRLRYLRQGRGRYSGELNGERAR
Ga0066669_111449982	3300018482	Grasslands Soil	MNSWELIFRQSRVNHGTYNGDRLLGQSWRWPEGTWFQSRLRYLRQGRGRYSSELNGERVRSFLARR
Ga0193715_10069875	3300019878	Soil	MNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRSQ
Ga0193723_11625571	3300019879	Soil	VVTRSSSSERGENFAMNSWELIFTQSRVNNGSYDGDRLPGNNWRWPEGTWFQTRLRYLRRGSGRYAGELIGGRSQ
Ga0193707_10461715	3300019881	Soil	MAMNAWELIFRQSRVNNGAYDGDKLPRQNRAWPRGTWFQRRLRYLCRGRGKYSTEFAKGSLQ
Ga0193713_10156273	3300019882	Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTATRAQ
Ga0210380_100897665	3300021082	Groundwater Sediment	MTSWELIFRQSRVNSDSYDGDQLPAQNWHWPQGTWFQTRLWHLRNRYGRYTR
Ga0224452_11133752	3300022534	Groundwater Sediment	PEEEEMATNAWELIFRQSRVNNGAYDGEQLPAQNWNWPRGTWFQRRLRYLRRGNKYSRELAKQDLQ
Ga0222622_107833492	3300022756	Groundwater Sediment	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGIRAQ
Ga0210138_10181342	3300025580	Natural And Restored Wetlands	MNPWELIFRQSRVNLGSYDGDRLPAQNWEWPRETWFQTRLRYLRGVRARYTRGLPEERVH
Ga0207707_100352277	3300025912	Corn Rhizosphere	MSTWQLIFRQSRVNDGIYYGDRLPGQNWRWPQGTWLQTRLRSMRRELGRKAAEAAATRSGAFER
Ga0207707_100500374	3300025912	Corn Rhizosphere	MSTWQLIFRQSRVNDGVYYGDRLPGHNWQWPQGTWLQSRLRYTRRGLGRKSAEAAATHRGAFER
Ga0207701_100242716	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPEGTWLQTRLRYLRHGRSRQSGELTATRAQ
Ga0207686_107101782	3300025934	Miscanthus Rhizosphere	MTSWELIFRQSRVNSDSYDGDQLPAQNWHWPQGTWFQTRLWHLRNRYGRYTRTLPEQRRL
Ga0207686_110490541	3300025934	Miscanthus Rhizosphere	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGKLTATRAQ
Ga0209438_10634733	3300026285	Grasslands Soil	MKSWELIFRQSRVNNGTYDGDRLPGQNWQWPQDTWLQTRLRYLRRGRGRQSGELTDARAR
Ga0209240_11328492	3300026304	Grasslands Soil	MKSWELIFRQSRVNNGTYDGDRLPGQNWQWPQDTWLQTRLLYLRRGRGRQSGELTDARAR
Ga0208454_100068311	3300027573	Soil	MNSWELIFRQSRVNLGSYDGDRLPTQNWDWPRGTWFQTRLWHLRHGRSRYTRALPQERLH
Ga0209701_101556402	3300027862	Vadose Zone Soil	MNSWQVIFEQSRVNNGAYDGDRLPAQNWDWPQGTWFQERLRYLRRSNGRYSRELTEQGLQ
Ga0207428_103131293	3300027907	Populus Rhizosphere	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQFGELTGTRAQ
Ga0209382_103738382	3300027909	Populus Rhizosphere	MNSWELVFRQSRVNHGSYDGDRLPAQNWDWPRDTWFQRRLRQLRNGRGRYFGALPQERWQ
Ga0209382_106598043	3300027909	Populus Rhizosphere	MNSWELIFRQSRVNSASYDGDQLVAQNWDWPRGTWFQRRLRYLRNGYGRYTRALPEER
Ga0307503_107048142	3300028802	Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELT
Ga0170824_1157223042	3300031231	Forest Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQFGELTGTQAQ
Ga0310813_100421408	3300031716	Soil	MSTWQLIFRQSRVNDGIYYGDRLPGQNWQWPQGTWLQTRLRSMRRELGRKAAEVAATRSGAFER
Ga0310890_114612281	3300032075	Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHSRSRQFAELTGTRAQ
Ga0335084_113712982	3300033004	Soil	MNPWELVFRQSRVNNGSYDGDRLPAANWLWPRDTWFQKRLHYLRFGNGRYDKTQREKVWH
Ga0326726_100592123	3300033433	Peat Soil	MNSWELIFRVSKVNGDNYDEDRLPVHNWEWPRGTWFQRRLRYLRNGYGGYTRRRLDEPWQ
Ga0364933_140873_458_619	3300034150	Sediment	FRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAQ
Ga0364941_069480_358_540	3300034417	Sediment	MKSWELVFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELTGTRAQ
Ga0314792_053834_444_689	3300034667	Soil	VCREKFARVKTLDYPSMRRFAMKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELIGTRPQ
Ga0314796_063815_90_272	3300034671	Soil	MKSWELIFRQSRVNNGIYDGDRLPGQNWQWPQGTWLQTRLRYLRHGRSRQSGELIGTRPQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088447

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences