Metagenome / Metatranscriptome Family F088431

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088431
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	60 residues
Representative Sequence	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWL
Number of Associated Samples	84
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.50 %
% of genes near scaffold ends (potentially truncated)	92.66 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.615 % of family members)
Environment Ontology (ENVO)	Unclassified (47.706 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.128 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.77% β-sheet: 0.00% Coil/Unstructured: 35.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05957	DUF883	5.50
PF01594	AI-2E_transport	2.75
PF03401	TctC	1.83
PF00291	PALP	0.92
PF04226	Transgly_assoc	0.92
PF06445	GyrI-like	0.92
PF06078	DUF937	0.92
PF07332	Phage_holin_3_6	0.92
PF00753	Lactamase_B	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	5.50
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.75
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.83
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.92
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.58 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	92.66 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	90.83 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.75 %
Unclassified	root	N/A	2.75 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	2.75 %
Unclassified	root	N/A	2.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.92 %

Name	Rank	Taxonomy	Distribution
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	2.75 %
Unclassified	root	N/A	2.75 %
Methylocystis bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %

Name	Rank	Taxonomy	Distribution
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	2.75 %
Unclassified	root	N/A	2.75 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.92 %
Methylocystis bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119292134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	668	Open in IMG/M
3300004080\|Ga0062385_11056071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300005332\|Ga0066388_100466864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1902	Open in IMG/M
3300005332\|Ga0066388_103629035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	788	Open in IMG/M
3300005332\|Ga0066388_105102754	Not Available	667	Open in IMG/M
3300005363\|Ga0008090_15206143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300005435\|Ga0070714_101021375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	805	Open in IMG/M
3300005459\|Ga0068867_101346179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	660	Open in IMG/M
3300005713\|Ga0066905_102344006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300005764\|Ga0066903_100089516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4079	Open in IMG/M
3300005764\|Ga0066903_103317223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	870	Open in IMG/M
3300005764\|Ga0066903_103574334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	837	Open in IMG/M
3300005764\|Ga0066903_104803789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718	Open in IMG/M
3300005764\|Ga0066903_105441438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	672	Open in IMG/M
3300006049\|Ga0075417_10405354	Not Available	675	Open in IMG/M
3300006852\|Ga0075433_10651507	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300009792\|Ga0126374_11438733	Not Available	563	Open in IMG/M
3300010043\|Ga0126380_11127127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300010048\|Ga0126373_11866729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	664	Open in IMG/M
3300010048\|Ga0126373_13204674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300010359\|Ga0126376_10190815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1688	Open in IMG/M
3300010359\|Ga0126376_10599031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1042	Open in IMG/M
3300010359\|Ga0126376_11510356	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300010359\|Ga0126376_12920742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	528	Open in IMG/M
3300010362\|Ga0126377_11485471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	751	Open in IMG/M
3300010366\|Ga0126379_11470056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	787	Open in IMG/M
3300010366\|Ga0126379_12615355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602	Open in IMG/M
3300010366\|Ga0126379_13360640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	536	Open in IMG/M
3300010376\|Ga0126381_102821417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	693	Open in IMG/M
3300010376\|Ga0126381_103275952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300010863\|Ga0124850_1130317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300012971\|Ga0126369_10781870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1036	Open in IMG/M
3300012971\|Ga0126369_12751483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	575	Open in IMG/M
3300015374\|Ga0132255_100761780	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300016270\|Ga0182036_10650560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	849	Open in IMG/M
3300016319\|Ga0182033_10435053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1116	Open in IMG/M
3300016357\|Ga0182032_11218065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300016371\|Ga0182034_11408738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300016387\|Ga0182040_11275616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	620	Open in IMG/M
3300016404\|Ga0182037_11439299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300016422\|Ga0182039_11402976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
3300017973\|Ga0187780_11310294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300020579\|Ga0210407_10739436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	761	Open in IMG/M
3300020581\|Ga0210399_10694043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
3300021180\|Ga0210396_11036099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	694	Open in IMG/M
3300021181\|Ga0210388_11083405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	684	Open in IMG/M
3300021560\|Ga0126371_10108783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2775	Open in IMG/M
3300021560\|Ga0126371_13112924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	561	Open in IMG/M
3300021560\|Ga0126371_13168318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	556	Open in IMG/M
3300022708\|Ga0242670_1041645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	628	Open in IMG/M
3300026839\|Ga0207764_118147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
3300027003\|Ga0207722_1026150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	637	Open in IMG/M
3300027313\|Ga0207780_1069793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	593	Open in IMG/M
3300027703\|Ga0207862_1098697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	878	Open in IMG/M
3300027907\|Ga0207428_10113846	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300028819\|Ga0307296_10566481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	622	Open in IMG/M
3300030990\|Ga0308178_1178774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M
3300031093\|Ga0308197_10249883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	629	Open in IMG/M
3300031096\|Ga0308193_1043029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	659	Open in IMG/M
3300031099\|Ga0308181_1092197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	643	Open in IMG/M
3300031114\|Ga0308187_10215396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	680	Open in IMG/M
3300031184\|Ga0307499_10022885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1359	Open in IMG/M
3300031543\|Ga0318516_10217793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1104	Open in IMG/M
3300031545\|Ga0318541_10804569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	524	Open in IMG/M
3300031546\|Ga0318538_10565779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	616	Open in IMG/M
3300031546\|Ga0318538_10722498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	540	Open in IMG/M
3300031561\|Ga0318528_10393793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	744	Open in IMG/M
3300031572\|Ga0318515_10793222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M
3300031668\|Ga0318542_10460843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	659	Open in IMG/M
3300031682\|Ga0318560_10768990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300031715\|Ga0307476_10950972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	633	Open in IMG/M
3300031719\|Ga0306917_10165001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1655	Open in IMG/M
3300031744\|Ga0306918_11216036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	581	Open in IMG/M
3300031744\|Ga0306918_11574197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	501	Open in IMG/M
3300031747\|Ga0318502_10718235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	604	Open in IMG/M
3300031748\|Ga0318492_10337866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	787	Open in IMG/M
3300031781\|Ga0318547_10966355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300031796\|Ga0318576_10355661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300031797\|Ga0318550_10209808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	943	Open in IMG/M
3300031799\|Ga0318565_10186149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1010	Open in IMG/M
3300031833\|Ga0310917_10932606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	584	Open in IMG/M
3300031845\|Ga0318511_10101139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300031879\|Ga0306919_10802372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	723	Open in IMG/M
3300031890\|Ga0306925_11046575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300031893\|Ga0318536_10708969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	501	Open in IMG/M
3300031941\|Ga0310912_10873809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	693	Open in IMG/M
3300031942\|Ga0310916_10383494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1195	Open in IMG/M
3300031942\|Ga0310916_11393143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	574	Open in IMG/M
3300031942\|Ga0310916_11578289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	533	Open in IMG/M
3300031945\|Ga0310913_10334790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1070	Open in IMG/M
3300031946\|Ga0310910_10717965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	789	Open in IMG/M
3300031946\|Ga0310910_11378757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	543	Open in IMG/M
3300031946\|Ga0310910_11445300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	528	Open in IMG/M
3300031947\|Ga0310909_10408175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1140	Open in IMG/M
3300031954\|Ga0306926_10354340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	1814	Open in IMG/M
3300031959\|Ga0318530_10241221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	744	Open in IMG/M
3300031962\|Ga0307479_11167987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	734	Open in IMG/M
3300032001\|Ga0306922_10839323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	958	Open in IMG/M
3300032001\|Ga0306922_11644538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	637	Open in IMG/M
3300032010\|Ga0318569_10459259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300032043\|Ga0318556_10495123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300032051\|Ga0318532_10282764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	589	Open in IMG/M
3300032055\|Ga0318575_10528417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	599	Open in IMG/M
3300032055\|Ga0318575_10538107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	593	Open in IMG/M
3300032059\|Ga0318533_10554726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	842	Open in IMG/M
3300032059\|Ga0318533_10999065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300032076\|Ga0306924_10549394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1311	Open in IMG/M
3300033289\|Ga0310914_11240881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300033290\|Ga0318519_10781718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	4.59%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.90%
Loam	Environmental → Terrestrial → Soil → Loam	14.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027313	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1192921341	3300002568	Soil	MFAPLMHAVRADIDRQVGWARGEIWRQTRHTALIGALAAVAVLAALGAIIAWLIALYFWLSIELDPFA
Ga0062385_110560711	3300004080	Bog Forest Soil	MLAALLGAVRADLDRQVGWAREEARRQIQYAAVIGAIGGVAALAALGALIVGLIALHS
Ga0066388_1004668641	3300005332	Tropical Forest Soil	MFAPLLGAVRADMDRQMGWAREELRRQVRYTALIGAIGGMGALAAIGALIVGLIALHSWLAPQVGSL
Ga0066388_1036290353	3300005332	Tropical Forest Soil	MFAPLFGAVRADVDRQIAWAKDEVRRQTRHTALIGALAGAAALAALGAIVVGLTALYLW
Ga0066388_1051027542	3300005332	Tropical Forest Soil	MFAPLKAAVQADVDRQVGWAKGEVRRQARYAALIGFLAGAGALASVGAGVVGL
Ga0008090_152061431	3300005363	Tropical Rainforest Soil	TGTRLMFAPLLGAVHADIDRQFGWAQGKVRHQVRYAAVAAALAALGA*
Ga0070714_1010213751	3300005435	Agricultural Soil	MFAPLLGAVRADVDRQVGWAQGEVRRQIRFAALSGAVAGVAALATLGALVVGLIALHVWLET
Ga0068867_1013461792	3300005459	Miscanthus Rhizosphere	MFAPLMDAVRSDIDRQVGWARGEVQRQARHTAFIGALAAVAALAALGAIIAGLIALYLWLSIELGPFAALG
Ga0066905_1023440062	3300005713	Tropical Forest Soil	MLASLMGAVRADIDRQIGWAKGEARRQTRHTAVVSALAIAAALAALGAII
Ga0066903_1000895161	3300005764	Tropical Forest Soil	MFAPLFGAVRADVDRQVSWAKAEVRRQTRHTALIAILTGVAALAALGAIVVALIGVYFWLAA
Ga0066903_1033172231	3300005764	Tropical Forest Soil	MFAPLFGAVRADIDRQVGWAQGEVRRQVRFAALSGALAGMAALAALGALVVGLIALH
Ga0066903_1035743341	3300005764	Tropical Forest Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTSHATLTGVLAAVATLAALGAIVIGLIALYLWLSMQADPFIALGMIG
Ga0066903_1048037891	3300005764	Tropical Forest Soil	MFAPLLGAVHADIDRQIKWGKAEVRRQTRHTALIAILAGVAALAALGAIVVALIGVYFWLAARTGPFIALG
Ga0066903_1054414382	3300005764	Tropical Forest Soil	MFAPLLGAVRADIDRQVVGHARRARRQIRYAVLLGAIAGMAALAALGVLTVGLIALHSWLAPQVGADV*
Ga0075417_104053542	3300006049	Populus Rhizosphere	MFAPLMDAVRSDIDRQVGWARGEVRRQTRHTALIGTLAGVAALAALGAIIAGLIALYFWLSVELNPFAALG
Ga0075433_106515073	3300006852	Populus Rhizosphere	MFAPLMEAVRSDIDRQVGWARGEVRRQTRHTALIGALAAVAALAALGAIIAGLIALYFWLSIEL
Ga0126374_114387331	3300009792	Tropical Forest Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTRYATLTGVLAGVAALAALGAIIIGLIALYLWL
Ga0126380_111271271	3300010043	Tropical Forest Soil	MFAPLMDAVRADIDRQIGWARGEVRRQTRHTAVIGAVAGVAALAALGAIIAGLIALYFWL
Ga0126373_118667292	3300010048	Tropical Forest Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFTAVTGVLAGVAALAALGTITVSLIALYFWLVTRVDQFI
Ga0126373_132046742	3300010048	Tropical Forest Soil	MFAPLLGAIRADLDRQVGWAKDEVRRQTRYATLTGVLAGVAALAALGAIVVGLIALYLWL
Ga0126376_101908151	3300010359	Tropical Forest Soil	MFAPLLGAVRADIDRQVDWAQGEVRRQVRFAALSGTLAGIAALAALGALVVGLIAL
Ga0126376_105990313	3300010359	Tropical Forest Soil	MFAPLLGAIRADIDRQVGWAKEEVRRQTSYATLTGVLAGAAALAALGAITIGLIALYLWLLMQVDPF
Ga0126376_115103563	3300010359	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWVQGEVRRQVRFTAVSAALGGVAALAVIGALVVGLIALHMWLEPRFGAL
Ga0126376_129207421	3300010359	Tropical Forest Soil	MFASLKDAVHADMERQIGWARGEVRRQTRHTALIGSFAAAAALAILGAITVGLIALYFW
Ga0126377_114854711	3300010362	Tropical Forest Soil	MLASLKDAVRADIDRQIGWAKGEVRRQTRHTALIGSLAAAAALATVGAITVGLIALYF
Ga0126379_114700562	3300010366	Tropical Forest Soil	MLASLKDAVRADIDRQVGWAKGEVRRQTRHTALIGSLAAAAALATLGAIIVGLIALYFWLSEQLGAFTALGI
Ga0126379_126153551	3300010366	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWAQGEVRRQVRYAALTGALAGMAALAALGAL
Ga0126379_133606401	3300010366	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWAQDAVRRQVRYAGVAGALAGVSALAALGALAVGLIALHWWLAP
Ga0126381_1028214172	3300010376	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWAQGEIRRQVRHAAVTSALVGVAALAAVGALV
Ga0126381_1032759521	3300010376	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWAQGEVRRQIRFAALSGALAAIAALATLGAVVIGLI
Ga0124850_11303171	3300010863	Tropical Forest Soil	MFAPLLGAVRADMDRQMGWAREELRRQARYTALIGAIGGMVALAAIGAR*
Ga0126369_107818701	3300012971	Tropical Forest Soil	MFAPLIGVVRADIDRQVGWAKEEVRRQASHAVLITSLLVVAALAAFGAAVVGLIALYMWLAQQHGP
Ga0126369_127514832	3300012971	Tropical Forest Soil	MFAPLLGAVRADIDRQVGWAQDAVRRQVRYAGVAGALAGVSALAALGALAVGLIAL
Ga0132255_1007617801	3300015374	Arabidopsis Rhizosphere	MFAPLMEAVRSDIDRQVGWARGEVRRQPRHTALIGPLAAVAALAALGAIIAGLIALYFWLSVELNPFAALGMI
Ga0182036_106505602	3300016270	Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTRYATLTGVFAGVAALAALGATVVDRNRTTIG
Ga0182033_104350533	3300016319	Soil	MFAPLMDAVRADIDRQVGWARGEIRRQIRYAAFIGVIAGMGALAALGALVDGLIALHSWL
Ga0182032_112180651	3300016357	Soil	MFAPLLGVVRADIDRQMGWARAEVRRQIRYAVLIGAIAGMAALAALGALAVGLIALHSWLAP
Ga0182034_114087382	3300016371	Soil	MFASLQGAIRADIDRQVDWAREEVLRQVRFTALTGALAGVAALAALGTI
Ga0182040_112756161	3300016387	Soil	MFAPLLGAIRADIDRQAGWAKDEIRRQSRYATLTGVLAGVAALAALGA
Ga0182037_114392992	3300016404	Soil	MFAPLLGAIRADIDRQVGWAKDEVQRQTRYATLTGVLAGAAALAALGAIVV
Ga0182039_114029761	3300016422	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAVFIGVIAGMGTLAALGALIDG
Ga0187780_113102941	3300017973	Tropical Peatland	MFAPLLGAIRADVDRQVGWAKDEVRRQSRYATLTGVLVGAAALATLGAIVVGLIA
Ga0210407_107394363	3300020579	Soil	MLALLLGAVCADIDRQVSWAKTGVRRQTRHTALVAALSGVAVLAALGADIAGLIAVYTWLATQLGP
Ga0210399_106940432	3300020581	Soil	MLALLLGAVCADIDRQVSWAKTGVRRQTRHTALVAALSGVAVLAALGADIAGLIAVYTWLATQLGPLIALG
Ga0210396_110360992	3300021180	Soil	MLAALLGAVRADLDRQVAWAREEARRQARYAAVIGAITVMAALAGLGALIVGLIALHSWL
Ga0210388_110834052	3300021181	Soil	MLAALLGAVRADLDRQVAWAREEARRQARYAAVIGAITVMAALAGLGALIVGLIALHSW
Ga0126371_101087835	3300021560	Tropical Forest Soil	MLAPLMGAIRADIDRQIGWAKGEVGRQARFTALTAAFAAVAALAVLGAIVVGLIALYRWLAIQFDPFI
Ga0126371_131129241	3300021560	Tropical Forest Soil	MFGPLLGAIRADIDRQVGWAKDEVRRQTRYATLTGVLAGVAALAALCAIIVGL
Ga0126371_131683181	3300021560	Tropical Forest Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTRYATLTGVLAGVAALAALGAIVVGLVALYLWLSMR
Ga0242670_10416451	3300022708	Soil	MFAPLLGVIRADIDRQAGWAREEARRQIRYAVLIGAIAGMGALAGLGALTVGLIALHS
Ga0207764_1181471	3300026839	Tropical Forest Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGALAALGALIDGLIALH
Ga0207722_10261502	3300027003	Tropical Forest Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGVLAALGALIDG
Ga0207780_10697932	3300027313	Tropical Forest Soil	MFALLLGAVRSDIDRQMGWVRAEVRGQIRYAALVGAIAGMAALAVLGALIVGLIA
Ga0207862_10986973	3300027703	Tropical Forest Soil	MFAPLLNGIRADIDQQIDWAKLEVRRQTRYAVLIGVFTGIATLAALGAIIIG
Ga0207428_101138463	3300027907	Populus Rhizosphere	MFAPLMEAVRSDIDRQVGWARGEVRRQTRHTALIGALAAVAALAVLGAIIAGLIALYFWLSVE
Ga0307296_105664811	3300028819	Soil	MFAPLLDAVRADIDRQIDWAKGEVRHQTRHTALIGSLAVVAALAALGAIIAG
Ga0308178_11787741	3300030990	Soil	MFAPLMDAVRADIDRQIGWARGEVWRHTHHTALIGSLAAVAALAALGAIIAGLIALYFWLSIELDP
Ga0308197_102498831	3300031093	Soil	MFAPLMDAVRADIDRQIGWARGEVWRQTHHTALIGSLAAVAALAALGAIIA
Ga0308193_10430292	3300031096	Soil	MFAPLMDAVRADIDRQIGWARGEVWRHTHHTALIGSLAAVAALAALGAIIAGLIALYFWLSIE
Ga0308181_10921971	3300031099	Soil	MFAPLLDAVRADIDRQIDWAKGEVRHQTRHTALIGSLAVVAALAALGAIIAGLIALYL
Ga0308187_102153962	3300031114	Soil	MFAPLMDAVRADIDRQIGWARGEVWRQTHHTALIGSLAAVAALAALGAIIAGL
Ga0307499_100228851	3300031184	Soil	MFAVLKDAVRADIDRQIGWARGEVRRQTYHTALIGSLAGVAALAALGAIIAGLIALYFWLSIE
Ga0318516_102177933	3300031543	Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFSALTGVLAGVAALAVLGTI
Ga0318541_108045691	3300031545	Soil	MFAPLLGAVRADMDRQMGWAREELRRQVRYTALIGAIGGMVALAAIGALIVGLIALHSW
Ga0318538_105657791	3300031546	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWLSMQADPFIALAVIG
Ga0318538_107224982	3300031546	Soil	MFAPLMDAVRADIDRQVGWARGEIRRQIRYAAFIGVIAGMGALAALGALVDGLI
Ga0318528_103937931	3300031561	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGALAALGALIDG
Ga0318515_107932221	3300031572	Soil	MLAPLLGAVRADMDRQAGWAREEARRQMRFAVLIGAVAGMGALAALGA
Ga0318542_104608432	3300031668	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGL
Ga0318560_107689902	3300031682	Soil	MFAPLIGAVRADIDRQVSWAKEEVRRQARHAVLITILLVVAALAAFGAAVIGLIALYMWLAPQHG
Ga0307476_109509722	3300031715	Hardwood Forest Soil	MFAPLLGVIRADIDRQAGWAREEARRQIRYAVLIGAIAGMGALAGLGALTVGLIALHSWL
Ga0306917_101650013	3300031719	Soil	MFAPLLGAIRADVDRQVGWAKDEVRRQTRYATLTGVLAGVAALAALGAVIIGLIALY
Ga0306918_112160361	3300031744	Soil	MFASLLGAIRADIDRQVDWAKGEVRRQTSYTVLTGVLAAIAALAALGAAGVGITALYFRL
Ga0306918_115741972	3300031744	Soil	MFAPLLGVVRADIDRQVGWAREEARRQIRYTVLISAIAGMAALAALGALIVG
Ga0318502_107182352	3300031747	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWLSMQTDPFI
Ga0318492_103378662	3300031748	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGTLAALGALID
Ga0318547_109663552	3300031781	Soil	MFASLQGAIRADIDRQVDWARGEVLRQVRFTALTGVLAGVAALAALGTIT
Ga0318576_103556612	3300031796	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLI
Ga0318550_102098081	3300031797	Soil	MFAPLLGAVRADIDRQVGWAKREVKRQARHTALIGILAGLAALATLGAIVV
Ga0318565_101861492	3300031799	Soil	MFAPLLGVVRADIDRQMGWARAEVRRQIRYAVLIGAIAGMAALAALGALTVGLIALHSWLAPPACC
Ga0310917_109326061	3300031833	Soil	MFAPLVNGVRADIDRQIDWAKVEVHRQTRYTVMIGVLAAMAAVAALGAIIVGLIALYFWL
Ga0318511_101011393	3300031845	Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFSALTGVLAGVAALAVLGTITVTLIALYFWLATQVDRFIALGI
Ga0306919_108023722	3300031879	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWLSMQTNPFIA
Ga0306925_110465752	3300031890	Soil	GRRHRRDDDAGTKLMFAPLLGAVRADIDRQVVGHARRARRQIRYAVLLGAIAGMAALTALGVLTVGLIALHSWLAPQVGADV
Ga0318536_107089691	3300031893	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWLSMQTDPF
Ga0310912_108738091	3300031941	Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTSYATLTGVLAAVAALAALGAIVIGLIALYLWLSMRADPFI
Ga0310916_103834941	3300031942	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWLSMQTD
Ga0310916_113931432	3300031942	Soil	MFAPLLGVVRADIDRQVGWAREEARRQIRYTVLISAIAGMAALAALGALIV
Ga0310916_115782892	3300031942	Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFTALTGVLAGVAALAALGTITVTLIALYLWLATQVDRFIALGIIGAGLLLLALIL
Ga0310913_103347901	3300031945	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLWL
Ga0310910_107179653	3300031946	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGTLAALGALIDGL
Ga0310910_113787572	3300031946	Soil	MFAPLLGAIRADIDRQVGWANDEVRRRTRYATLTGVFAGVAALAALGAIVVDRNRTIIG
Ga0310910_114453001	3300031946	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGTLAALGALIDGLIALH
Ga0310909_104081753	3300031947	Soil	MFAPLMDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGALAALGALVDGLIALHSWLTPQ
Ga0306926_103543403	3300031954	Soil	MFAPLLGAVRADIDRQVVGHARRARRQIRYAVLLGAIAGMAALTALGVLTVGLIALHSWLAPQVGADV
Ga0318530_102412212	3300031959	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGIIALYLWL
Ga0307479_111679872	3300031962	Hardwood Forest Soil	MFAPLLGVIRADIDRQTGWARQEARRQIRYAALVGAIAGMGALAALGALTVG
Ga0306922_108393232	3300032001	Soil	MFAPLVNGVRADIDRQIDWAKVEVHRQTRYTVMIGVLAGMAALATLGAIIIGLIALYFWLAP
Ga0306922_116445381	3300032001	Soil	MFVPLLGALRADIDRQAGWAREEARRQLRYAVLIGAIAGMGALAAL
Ga0318569_104592592	3300032010	Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQTSYATLTGVLAAVAALAALGAIVIG
Ga0318556_104951231	3300032043	Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFTALTGVLAGVAALAALGTITVALIALYLWLATRVDRFTALGII
Ga0318532_102827642	3300032051	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALIAIVVGLIALYLW
Ga0318575_105284172	3300032055	Soil	MFAPLMDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGTLAALGALIDGLIALHSWLAPQV
Ga0318575_105381071	3300032055	Soil	MFASLQGAIRADIDRQVDWARGEVLRQARFSALTGVLAGVAALAVLGTITVTLIAL
Ga0318533_105547262	3300032059	Soil	MFAPLLGAIRADIDRQVGWARDEVRRQTRYATLTGVFAGVAALAALGAIVVGLIALYLW
Ga0318533_109990651	3300032059	Soil	MFAPLLGAIRADIDRQVGWAKDEVRRQSRYATLTGVLAGVAALAALGAIVVGLIALYLWLSMQADPFIA
Ga0306924_105493942	3300032076	Soil	MFAPLLVVVRADVDRQMGWARAEVQGQIRYAVLIGAIAGMAALAALGALTVGLIALHSWLAPPACC
Ga0310914_112408811	3300033289	Soil	MFAPLLDAVRADIDRQVGWARDEIRRQIRYAAFIGVIAGMGTLAALGALIDGLVALHSWLAPQVGSL
Ga0318519_107817182	3300033290	Soil	MLAPLLGAVRADMDRQAGWARKEARRQMRFAVLIGAVAGMGALAAVGALTVGLIALHTWLTPQL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088431

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences