Metagenome / Metatranscriptome Family F088410

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088410
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	68 residues
Representative Sequence	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVS
Number of Associated Samples	91
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	93.58 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.569 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.624 % of family members)
Environment Ontology (ENVO)	Unclassified (55.046 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 88.24% β-sheet: 0.00% Coil/Unstructured: 11.76%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03401	TctC	20.18
PF01887	SAM_HAT_N	9.17
PF00248	Aldo_ket_red	0.92
PF07731	Cu-oxidase_2	0.92
PF04030	ALO	0.92
PF00908	dTDP_sugar_isom	0.92
PF16868	NMT1_3	0.92
PF13179	DUF4006	0.92
PF00873	ACR_tran	0.92
PF01527	HTH_Tnp_1	0.92
PF01989	AcnX_swivel_put	0.92
PF02979	NHase_alpha	0.92
PF09604	Potass_KdpF	0.92
PF02738	MoCoBD_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	20.18
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	9.17
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.92
COG1786	Mevalonate 5-phosphate dehydratase subunit 2, swiveling domain (modified mevalonate pathway)	Lipid transport and metabolism [I]	0.92
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.90 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	76.15 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	58.72 %
Unclassified	root	N/A	17.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.34 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.72 %
Unclassified	root	N/A	17.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.72 %
Unclassified	root	N/A	17.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1068146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	541	Open in IMG/M
3300000956\|JGI10216J12902_112453886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300005167\|Ga0066672_10826127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300005332\|Ga0066388_105854220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300005332\|Ga0066388_106854425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300005363\|Ga0008090_15778789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	526	Open in IMG/M
3300005445\|Ga0070708_100247738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1673	Open in IMG/M
3300005764\|Ga0066903_103158662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	891	Open in IMG/M
3300005764\|Ga0066903_106902195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300006871\|Ga0075434_100886066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	907	Open in IMG/M
3300009792\|Ga0126374_10664106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	779	Open in IMG/M
3300010046\|Ga0126384_10313116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1295	Open in IMG/M
3300010047\|Ga0126382_10968407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	742	Open in IMG/M
3300010048\|Ga0126373_10596473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1157	Open in IMG/M
3300010304\|Ga0134088_10495584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300010323\|Ga0134086_10028112	All Organisms → cellular organisms → Bacteria → Proteobacteria	1837	Open in IMG/M
3300010358\|Ga0126370_10454152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1069	Open in IMG/M
3300010358\|Ga0126370_11204491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300010361\|Ga0126378_11582595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300010366\|Ga0126379_11864415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300012189\|Ga0137388_10400705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1270	Open in IMG/M
3300012189\|Ga0137388_10984737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300012198\|Ga0137364_11454762	Not Available	506	Open in IMG/M
3300012205\|Ga0137362_10378556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1226	Open in IMG/M
3300012206\|Ga0137380_10830223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300012210\|Ga0137378_11128214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300012211\|Ga0137377_11710721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300012355\|Ga0137369_10097583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2420	Open in IMG/M
3300012356\|Ga0137371_10142227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1880	Open in IMG/M
3300012356\|Ga0137371_10411087	Not Available	1049	Open in IMG/M
3300012358\|Ga0137368_11005715	Not Available	500	Open in IMG/M
3300012361\|Ga0137360_10588807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300012361\|Ga0137360_11029163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300012362\|Ga0137361_10593330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300012948\|Ga0126375_10246289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1207	Open in IMG/M
3300012951\|Ga0164300_10951079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300012986\|Ga0164304_11285303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300015264\|Ga0137403_11371017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300015357\|Ga0134072_10009706	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300015371\|Ga0132258_10315810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3849	Open in IMG/M
3300016270\|Ga0182036_10802021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300016319\|Ga0182033_10029705	All Organisms → cellular organisms → Bacteria → Proteobacteria	3474	Open in IMG/M
3300016319\|Ga0182033_10181888	Not Available	1655	Open in IMG/M
3300016387\|Ga0182040_10049429	All Organisms → cellular organisms → Bacteria → Proteobacteria	2607	Open in IMG/M
3300016404\|Ga0182037_11879730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300021406\|Ga0210386_11668305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300021475\|Ga0210392_11448870	Not Available	513	Open in IMG/M
3300025910\|Ga0207684_10127245	Not Available	2186	Open in IMG/M
3300026310\|Ga0209239_1306151	Not Available	550	Open in IMG/M
3300026557\|Ga0179587_10272499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1086	Open in IMG/M
3300028878\|Ga0307278_10049711	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300031543\|Ga0318516_10218593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300031544\|Ga0318534_10544400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300031549\|Ga0318571_10400501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031561\|Ga0318528_10037364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2413	Open in IMG/M
3300031573\|Ga0310915_10052929	Not Available	2628	Open in IMG/M
3300031640\|Ga0318555_10000504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12008	Open in IMG/M
3300031668\|Ga0318542_10522551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300031682\|Ga0318560_10125373	Not Available	1346	Open in IMG/M
3300031682\|Ga0318560_10146184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1249	Open in IMG/M
3300031682\|Ga0318560_10391173	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031713\|Ga0318496_10366257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300031723\|Ga0318493_10214027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300031724\|Ga0318500_10118486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1221	Open in IMG/M
3300031724\|Ga0318500_10184793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	993	Open in IMG/M
3300031744\|Ga0306918_10137363	Not Available	1791	Open in IMG/M
3300031748\|Ga0318492_10472776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300031751\|Ga0318494_10496802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300031763\|Ga0318537_10058633	Not Available	1403	Open in IMG/M
3300031763\|Ga0318537_10279286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300031765\|Ga0318554_10090843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1710	Open in IMG/M
3300031765\|Ga0318554_10218124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1086	Open in IMG/M
3300031769\|Ga0318526_10326585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300031778\|Ga0318498_10148314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300031792\|Ga0318529_10225696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300031794\|Ga0318503_10318383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300031796\|Ga0318576_10252210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	832	Open in IMG/M
3300031796\|Ga0318576_10366910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300031799\|Ga0318565_10094840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1428	Open in IMG/M
3300031819\|Ga0318568_10132788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1513	Open in IMG/M
3300031831\|Ga0318564_10393307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300031833\|Ga0310917_10619618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300031845\|Ga0318511_10516234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300031846\|Ga0318512_10102374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300031879\|Ga0306919_10289840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1240	Open in IMG/M
3300031890\|Ga0306925_10124226	Not Available	2763	Open in IMG/M
3300031890\|Ga0306925_10579860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1186	Open in IMG/M
3300031941\|Ga0310912_10324485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300031942\|Ga0310916_10041044	All Organisms → cellular organisms → Bacteria	3480	Open in IMG/M
3300031959\|Ga0318530_10049083	Not Available	1583	Open in IMG/M
3300031959\|Ga0318530_10281559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300031959\|Ga0318530_10397244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300032025\|Ga0318507_10073890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1387	Open in IMG/M
3300032035\|Ga0310911_10560874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300032039\|Ga0318559_10290548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
3300032052\|Ga0318506_10152756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300032055\|Ga0318575_10089104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1480	Open in IMG/M
3300032059\|Ga0318533_10014736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4816	Open in IMG/M
3300032089\|Ga0318525_10485389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300032094\|Ga0318540_10527710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300032180\|Ga0307471_103977561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300033289\|Ga0310914_10414278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1219	Open in IMG/M
3300033290\|Ga0318519_10489924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.25%
Plants	Host-Associated → Plants	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.74%
Loam	Environmental → Terrestrial → Soil → Loam	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	48.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10681462	3300000580	Forest Soil	MKSFVIAALLSALMTGAASSQVYYSYPEWDRLSDQARTLYIAGAYDTLVSIASADTAATSRHYSK
JGI10216J12902_1124538861	3300000956	Soil	MKSVLIAGALSALLVGQAHAQVYYSYPQWDRLSESDQAIYIAGAYDSLVSIASPNTAS
Ga0066672_108261271	3300005167	Soil	MKPLLIAGLLSAWMIDQANAQVYYSYPEWNRLDDSARAIYIAGAYDSLVSIASSDTALPLGTIQSA*
Ga0066388_1058542201	3300005332	Tropical Forest Soil	MKSFVIAGLLSALMTGTASSQVYYSYPEWDRLSDQARTLYIAGAYDTLVSIASADTAATSRHYSKC
Ga0066388_1068544251	3300005332	Tropical Forest Soil	MKSVLIAGLLSALLLGQAHAQVYYSYPEWDRLNESDQAVYIAGAYDSLVSIASPN
Ga0008090_157787891	3300005363	Tropical Rainforest Soil	MKSFVIAALLSALMTGAASSQVYYSYPEWDRLSDQARTLYIAGAYDTLVSIASADTAATSRHYSKC
Ga0070708_1002477384	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKSLVIAGLLSVLMIGRANTQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPIEQ
Ga0066903_1031586623	3300005764	Tropical Forest Soil	MKSLVIAGLLSALLIGRVNAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPDTASISRHYSKCVSG
Ga0066903_1069021952	3300005764	Tropical Forest Soil	MKSVVVVGLLSALMIGRANAQVYYTYSEWERLSDQARTMYIAGAYDSLISIVSPDTASTARHYSKC
Ga0075434_1008860661	3300006871	Populus Rhizosphere	MKSVMIAVLLSALLVGQAHAQVYYSYPQWDRLSEAEQAIYIAGAYDSLVSIASPNTASAARHYSRCLASNRLSSEQLARNVR
Ga0114129_126945811	3300009147	Populus Rhizosphere	MKSLLMAGLFSALTIGQANAQVYYNYADWERLNESDRAAYIAGAYDSLVSIA
Ga0126374_106641062	3300009792	Tropical Forest Soil	MKSLVIAGLLSALMIGRANALVYYTYPEWERLSDQARTMYIAGAYDSLVSIASPETA
Ga0126384_103131161	3300010046	Tropical Forest Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARTMYIAGAYDSLISIVSPETASTARHYSKCVSG
Ga0126382_109684071	3300010047	Tropical Forest Soil	MPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIEQLAKN
Ga0126373_105964731	3300010048	Tropical Forest Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARTMYIAGAYDSVVSIASPDTMSIS
Ga0134088_104955842	3300010304	Grasslands Soil	MKSLVIAGFLSALMISRANTQVYYNYPAWDRLSDQARAMYIAGAYDSLVSIASPDTASTSRHYSKCVS
Ga0134086_100281121	3300010323	Grasslands Soil	MKSLVIAGFLSALMISRANTQVYYNYPAWDRLSDQARAMYIAGAYDSLVSIASPDTASTSRHYSKCVSGRL
Ga0126370_104541521	3300010358	Tropical Forest Soil	MKSLVIAGLLSALMIGRGNAQVYYTYPEWDRLSDQARTLYIAGAYDTLVSIASADTAATSRHYSK
Ga0126370_112044912	3300010358	Tropical Forest Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSEQARAMYIAGAYDSLVTIVSPDTASTARHYSKCVSGRVPVE
Ga0126378_115825952	3300010361	Tropical Forest Soil	MKSVMIAVLLSALLVGQAHAQVYYSYPEWDRLSEAEQAIYIAGAYDSLVSIASPNTASAARHYSRCVASNRLSSEQ
Ga0126379_118644151	3300010366	Tropical Forest Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIA
Ga0126381_1021656672	3300010376	Tropical Forest Soil	MPMSMPMKSLVIAGLLSALMIGRADAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIA
Ga0137388_104007054	3300012189	Vadose Zone Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPIEQLAK
Ga0137388_109847372	3300012189	Vadose Zone Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPIEQLAK
Ga0137364_114547621	3300012198	Vadose Zone Soil	MKSLLVAGLFSALTINQANAQVYYNYADWDRLNESDRAAYIAGAYDSLVSIATAETA
Ga0137362_103785561	3300012205	Vadose Zone Soil	MPMKSLVIAGLLSALMIGRANTQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPDTASIS
Ga0137380_108302232	3300012206	Vadose Zone Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASIS
Ga0137378_111282142	3300012210	Vadose Zone Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVS
Ga0137377_117107212	3300012211	Vadose Zone Soil	MKPLLIAGLLSAWMIDQANAQVYYSYPEWNRLDDSARAIYIAGAYDSLVSIASSNTAPASRHYSKCVASSRLTSE
Ga0137369_100975835	3300012355	Vadose Zone Soil	MKLLLIAGLFSALTINQANAQVYYNYADWDRLNESDRAAYIAGAYDSLVSIAT
Ga0137371_101422271	3300012356	Vadose Zone Soil	MKSLVIVGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPI
Ga0137371_104110872	3300012356	Vadose Zone Soil	MKSLLVAGLFSALTINQANAQVYYNYADWDRLNESDRAAYIAGAYDSLVSIATA
Ga0137368_110057152	3300012358	Vadose Zone Soil	MKLLLIAGLFSALTINQANAQVYYNYADWDRLNESDRAAYIAGAYDSLVR
Ga0137360_105888072	3300012361	Vadose Zone Soil	MKSLVIAGFLSALMIGRANTQVYYNYPAWDRLSDQARAMYIAGAYDSLVSIASPDT
Ga0137360_110291631	3300012361	Vadose Zone Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPI
Ga0137361_105933302	3300012362	Vadose Zone Soil	MKSLVIAGFLSALMIGRANTQVYYNYPAWDRLSDQARAMYIAGAYDSLVSIASPDTASTSRHYSKCVSGRLPVEQLA
Ga0126375_102462891	3300012948	Tropical Forest Soil	MKSVMVAGLLSALMLGRANAQVYYTYPEWERLSDQAGTMYIAGAYDSLISIVSPDTAPTARHYSKCVSGRVPIEQLAKNV
Ga0164300_109510792	3300012951	Soil	MKSVLTAAFLSALLLGQAHAQVYYSYPQWDRLSESDQAVYIAGAYDSLVSIASPNTASAARHYSRCLASN
Ga0164304_112853031	3300012986	Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARSMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPI
Ga0137403_113710171	3300015264	Vadose Zone Soil	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPDTASISRHYSKCVSGRVP
Ga0134072_100097061	3300015357	Grasslands Soil	MKSVLIAGLLSALLLGQAHAQVYYSYPEWDRLNEADQAVYIAGAYDSLVSIASPNTASAARHYSRCVANNRLSSEQL
Ga0132258_103158106	3300015371	Arabidopsis Rhizosphere	MKSVMIAVLLSALLVGQAHAQVYYSYPQWDRLSEAEQAIYIAGAYDSLVSIASPNTA
Ga0182036_108020212	3300016270	Soil	MRMPMKSLVIAGLLSALMIGRGHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPI
Ga0182033_100297051	3300016319	Soil	MKSFVIAGLLSALMTGAASSQVYYTYPEWDRLSEQARTLYIAGAYDTLVSIASADTAATS
Ga0182033_101818881	3300016319	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARALYIAGAYDSLVSIASAETAPIARHYSKC
Ga0182040_100494291	3300016387	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPETAS
Ga0182037_118797302	3300016404	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHY
Ga0210386_116683051	3300021406	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPDT
Ga0210392_114488702	3300021475	Soil	MMAAVCDRLRLGRVPMKSVLIAGLLSALLLGQAHAQVYYSFPEWDRLNESDQAVYIAGAYDSLVSIASPNTASAARHFSRCVASNRL
Ga0207684_101272455	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKSLVIAGLLSVLMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPIEQLAKN
Ga0209239_13061511	3300026310	Grasslands Soil	MKSVLIAGLLSALTINQANAQVYYNYADWDRLNESDRAAYIAGAYDSLVSIATA
Ga0179587_102724991	3300026557	Vadose Zone Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASIS
Ga0307278_100497111	3300028878	Soil	MKSLSIAWLVSALLIGQADAQVYYNYPQWDRLNDLARATYIAGAY
Ga0318516_102185931	3300031543	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIE
Ga0318516_102311023	3300031543	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARALYIAGAYDSLVSIASAE
Ga0318534_105444002	3300031544	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIE
Ga0318571_104005011	3300031549	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVSIVSPETAPIARHYSKCVSGR
Ga0318528_100373641	3300031561	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIEQLAK
Ga0310915_100529291	3300031573	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPETASTARHYSKC
Ga0318555_100005041	3300031640	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSK
Ga0318542_105225511	3300031668	Soil	MKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIE
Ga0318561_104206841	3300031679	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASP
Ga0318560_101253733	3300031682	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARALYIAGAYDSLVSIASAETAPIARH
Ga0318560_101461841	3300031682	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRVPVEQL
Ga0318560_103911732	3300031682	Soil	MRTPIKSLVIAGLLSASMIGRPNAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSG
Ga0318496_103662572	3300031713	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRVP
Ga0318493_102140272	3300031723	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPI
Ga0318500_101184863	3300031724	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSLETASTARHYSKCVSGQV
Ga0318500_101847931	3300031724	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARALYIAGAYDSLVSIASAETAPIARHYSKCVSGR
Ga0306918_101373633	3300031744	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVS
Ga0318492_101217774	3300031748	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPE
Ga0318492_104727762	3300031748	Soil	MKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIEQLAK
Ga0318494_104968021	3300031751	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPETASTARHYSKCVS
Ga0318537_100586334	3300031763	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPETASTARHYSK
Ga0318537_102792861	3300031763	Soil	MKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVCGR
Ga0318554_100908431	3300031765	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIEQLAK
Ga0318554_102181241	3300031765	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYSK
Ga0318526_103265851	3300031769	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVS
Ga0318498_101483141	3300031778	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSK
Ga0318529_102256962	3300031792	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVP
Ga0318503_103183831	3300031794	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRV
Ga0318557_102212292	3300031795	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAE
Ga0318576_102522101	3300031796	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVP
Ga0318576_103669101	3300031796	Soil	MKSLVIAGLLSALMIGRANTQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCVSGRVPIE
Ga0318565_100948403	3300031799	Soil	MKSVVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARH
Ga0318568_101327881	3300031819	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVSIVSPETAPIARHYSKCV
Ga0318564_103933071	3300031831	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRVPVEQLA
Ga0310917_106196182	3300031833	Soil	MRMPMKSLVIAGLLSALMIGRGHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPIE
Ga0318511_105162341	3300031845	Soil	MKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASSSRHYSKCVSGRV
Ga0318512_101023741	3300031846	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVSIVSPETAP
Ga0306919_102898403	3300031879	Soil	MKSLVIAGLLSVLMIGRANTQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPETASISRHYSKCVSGRV
Ga0306925_101242261	3300031890	Soil	MKSLVIAGLLSALMIGRANTQVYYTYPEWDRLSDQARTMYIAGAYDSLVSISSPDTASISRHYSKCV
Ga0306925_105798602	3300031890	Soil	MKSVVVAGLLSALMIGRANAQVYYTYPEWERLSDQARTMYIAGAYDSLISIVSPDTASTARHYSKCV
Ga0310912_103244851	3300031941	Soil	MKSVVVAGLLSALMIGRANAQVYYTYPEWERLSDQARTMYIAGAYDSLISIVSPDTASTARHYSRCVSGR
Ga0310916_100410441	3300031942	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYS
Ga0318530_100490831	3300031959	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVTIVSPETASTARHYSKCVSG
Ga0318530_102815591	3300031959	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCV
Ga0318530_103972441	3300031959	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRVPVEQ
Ga0318507_100738903	3300032025	Soil	MKSLVIAGLLSALMIGRANAQVYYTYSEWDRLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRV
Ga0310911_105608741	3300032035	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVPI
Ga0318559_102905481	3300032039	Soil	MRMPMKSLVIAGLLSALMIGRGHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRVP
Ga0318506_101527563	3300032052	Soil	MKSLVIAGLLSALMIGRANAQVYYTYAEWDRLSDQARAMYIAGAYDSLVSIVSPETAPIARHY
Ga0318575_100891043	3300032055	Soil	MKSLVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPI
Ga0318533_100147361	3300032059	Soil	MRTPMKSLVIAGLLSALMIGRAHAQVYYTYSEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRV
Ga0318525_104853892	3300032089	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSGRV
Ga0318540_105277101	3300032094	Soil	MKSVVIAGLLSALMIGRANAQVYYTYPEWERLSDQARAMYIAGAYDSLVSIASAETAPIARHYSKCVSGRVPVEQ
Ga0307471_1039775611	3300032180	Hardwood Forest Soil	MKSLVIAGLLSALLIGHANAQVYYTYAEWERLSDQARTMYIAGAYDSLISITSPDTVPIARHYAKCVSGRVPVEQ
Ga0310914_104142781	3300033289	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPETASTSRHYSKCVSG
Ga0318519_104899241	3300033290	Soil	MRMPMKSLVIAGLLSALMIGRAHAQVYYTYPEWDRLSDQARTMYIAGAYDSLVSIASPET

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088410

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences