Metagenome / Metatranscriptome Family F088388

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088388
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	54 residues
Representative Sequence	MDLGSLPHLFNSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK
Number of Associated Samples	86
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.10 %
% of genes near scaffold ends (potentially truncated)	27.52 %
% of genes from short scaffolds (< 2000 bps)	76.15 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.312 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (39.450 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.85% β-sheet: 0.00% Coil/Unstructured: 48.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF08282	Hydrolase_3	45.87
PF03814	KdpA	11.93
PF09604	Potass_KdpF	6.42
PF02016	Peptidase_S66	2.75
PF12846	AAA_10	1.83
PF13432	TPR_16	0.92
PF00230	MIP	0.92
PF00122	E1-E2_ATPase	0.92
PF13410	GST_C_2	0.92
PF02669	KdpC	0.92
PF08327	AHSA1	0.92
PF13493	DUF4118	0.92
PF02518	HATPase_c	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	46.79
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	45.87
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	45.87
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	45.87
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	45.87
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	11.93
COG1619	Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling)	Cell wall/membrane/envelope biogenesis [M]	2.75
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.92
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.92
COG2156	K+-transporting ATPase, KdpC subunit	Inorganic ion transport and metabolism [P]	0.92
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.31 %
Unclassified	root	N/A	25.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.31 %
Unclassified	root	N/A	25.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.31 %
Unclassified	root	N/A	25.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.75 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.83 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1.83 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	0.92 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.92 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.92 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.92 %
Legionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	1.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.92 %
Legionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella	0.92 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	0.92 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	1.83 %
Dyella nitratireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella nitratireducens	0.92 %
Legionella cherrii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella cherrii	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	0.92 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Massilia polaris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia polaris	1.83 %
Dyella nitratireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella nitratireducens	0.92 %
Legionella cherrii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella cherrii	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %
Cyanophyceae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	0.92 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100020792	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300004091\|Ga0062387_101198533	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005167\|Ga0066672_10542404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	754	Open in IMG/M
3300005176\|Ga0066679_10050574	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300005260\|Ga0074072_1002461	All Organisms → cellular organisms → Bacteria → Proteobacteria	10644	Open in IMG/M
3300005329\|Ga0070683_100322286	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300005332\|Ga0066388_106631495	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005335\|Ga0070666_10327737	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300005335\|Ga0070666_10662074	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300005336\|Ga0070680_100015352	All Organisms → cellular organisms → Bacteria → Proteobacteria	6003	Open in IMG/M
3300005434\|Ga0070709_10450229	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300005436\|Ga0070713_100064611	All Organisms → cellular organisms → Bacteria	3072	Open in IMG/M
3300005436\|Ga0070713_100949843	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005436\|Ga0070713_101260543	Not Available	716	Open in IMG/M
3300005533\|Ga0070734_10799940	Not Available	535	Open in IMG/M
3300005535\|Ga0070684_100271007	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300005541\|Ga0070733_11137624	Not Available	523	Open in IMG/M
3300005563\|Ga0068855_101735626	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005586\|Ga0066691_10610178	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005602\|Ga0070762_10026148	All Organisms → cellular organisms → Bacteria	3089	Open in IMG/M
3300005610\|Ga0070763_10280928	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005614\|Ga0068856_102534773	Not Available	519	Open in IMG/M
3300005841\|Ga0068863_101153317	Not Available	780	Open in IMG/M
3300005842\|Ga0068858_100078720	All Organisms → cellular organisms → Bacteria	3063	Open in IMG/M
3300005843\|Ga0068860_101416164	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300006893\|Ga0073928_10394613	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300009093\|Ga0105240_10008547	All Organisms → cellular organisms → Bacteria → Proteobacteria	14631	Open in IMG/M
3300009093\|Ga0105240_10022309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8396	Open in IMG/M
3300009093\|Ga0105240_10061067	All Organisms → cellular organisms → Bacteria → Proteobacteria	4697	Open in IMG/M
3300009093\|Ga0105240_10559703	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300009093\|Ga0105240_11211390	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300009101\|Ga0105247_10550675	Not Available	848	Open in IMG/M
3300009101\|Ga0105247_11066477	Not Available	635	Open in IMG/M
3300009545\|Ga0105237_12051333	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300009551\|Ga0105238_10268590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia polaris	1686	Open in IMG/M
3300009551\|Ga0105238_10526289	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300010048\|Ga0126373_11328104	Not Available	785	Open in IMG/M
3300010371\|Ga0134125_10219331	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300010371\|Ga0134125_12598426	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010373\|Ga0134128_12674427	Not Available	550	Open in IMG/M
3300010396\|Ga0134126_10008242	All Organisms → cellular organisms → Bacteria	13104	Open in IMG/M
3300010877\|Ga0126356_10771136	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300012924\|Ga0137413_11614754	Not Available	530	Open in IMG/M
3300012927\|Ga0137416_10364051	Not Available	1216	Open in IMG/M
3300012927\|Ga0137416_11237537	Not Available	673	Open in IMG/M
3300012982\|Ga0168317_1007966	All Organisms → cellular organisms → Bacteria	3685	Open in IMG/M
3300013296\|Ga0157374_11710325	Not Available	654	Open in IMG/M
3300013306\|Ga0163162_13476804	Not Available	501	Open in IMG/M
3300013307\|Ga0157372_11234494	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300014325\|Ga0163163_10142889	All Organisms → cellular organisms → Bacteria → Proteobacteria	2436	Open in IMG/M
3300014658\|Ga0181519_10269077	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300014968\|Ga0157379_10211431	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300014968\|Ga0157379_10485648	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300015242\|Ga0137412_11320318	Not Available	502	Open in IMG/M
3300018088\|Ga0187771_10172377	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300019270\|Ga0181512_1545876	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300021086\|Ga0179596_10359220	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300021170\|Ga0210400_10773427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella nitratireducens	788	Open in IMG/M
3300021181\|Ga0210388_10022479	All Organisms → cellular organisms → Bacteria → Proteobacteria	5121	Open in IMG/M
3300021401\|Ga0210393_11050695	Not Available	658	Open in IMG/M
3300021401\|Ga0210393_11372610	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300021404\|Ga0210389_11196221	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300021405\|Ga0210387_11254299	Not Available	642	Open in IMG/M
3300021406\|Ga0210386_11466997	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300021474\|Ga0210390_10597943	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300022527\|Ga0242664_1129564	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	542	Open in IMG/M
3300022721\|Ga0242666_1189001	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300022722\|Ga0242657_1135365	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300024176\|Ga0224565_1013823	Not Available	864	Open in IMG/M
3300025903\|Ga0207680_10850928	Not Available	654	Open in IMG/M
3300025913\|Ga0207695_10063778	All Organisms → cellular organisms → Bacteria	3796	Open in IMG/M
3300025913\|Ga0207695_10231610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia polaris	1751	Open in IMG/M
3300025913\|Ga0207695_10396520	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300025913\|Ga0207695_10441124	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300025913\|Ga0207695_10450609	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300025914\|Ga0207671_11392069	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300025915\|Ga0207693_11280665	Not Available	549	Open in IMG/M
3300025917\|Ga0207660_10028320	All Organisms → cellular organisms → Bacteria	3831	Open in IMG/M
3300025927\|Ga0207687_10999189	Not Available	717	Open in IMG/M
3300025928\|Ga0207700_10215416	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300025928\|Ga0207700_10974463	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300025928\|Ga0207700_11964735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	512	Open in IMG/M
3300025929\|Ga0207664_11658568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	561	Open in IMG/M
3300026035\|Ga0207703_10019333	All Organisms → cellular organisms → Bacteria	5321	Open in IMG/M
3300026116\|Ga0207674_12135226	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026295\|Ga0209234_1154549	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300027066\|Ga0208236_1016209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	539	Open in IMG/M
3300027908\|Ga0209006_10344138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1264	Open in IMG/M
3300028379\|Ga0268266_10000420	All Organisms → cellular organisms → Bacteria → Proteobacteria	64525	Open in IMG/M
3300028536\|Ga0137415_10650489	Not Available	866	Open in IMG/M
3300028536\|Ga0137415_10816499	Not Available	743	Open in IMG/M
3300030520\|Ga0311372_10280043	All Organisms → cellular organisms → Bacteria	2661	Open in IMG/M
3300030841\|Ga0075384_10733662	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300030906\|Ga0302314_10169408	All Organisms → cellular organisms → Bacteria → Proteobacteria	2749	Open in IMG/M
3300031128\|Ga0170823_16295145	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300031231\|Ga0170824_111899776	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300031250\|Ga0265331_10037888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2359	Open in IMG/M
3300031446\|Ga0170820_17792254	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031474\|Ga0170818_104084286	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031708\|Ga0310686_104561464	Not Available	735	Open in IMG/M
3300031708\|Ga0310686_109375921	All Organisms → cellular organisms → Bacteria → Proteobacteria	3407	Open in IMG/M
3300031708\|Ga0310686_110805155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella cherrii	4480	Open in IMG/M
3300031715\|Ga0307476_10112394	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300031753\|Ga0307477_10936214	Not Available	571	Open in IMG/M
3300031823\|Ga0307478_11030103	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032515\|Ga0348332_10605032	Not Available	503	Open in IMG/M
3300032896\|Ga0335075_10122664	Not Available	3327	Open in IMG/M
3300033513\|Ga0316628_100898906	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300034268\|Ga0372943_0679009	Not Available	679	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.89%
Host-Associated	Host-Associated	32.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.30%
Plants	Host-Associated → Plants	32.11%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Peat	Environmental → Terrestrial → Peat	1.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Geologic	Environmental → Terrestrial → Geologic	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.27%
Loam	Environmental → Terrestrial → Soil → Loam	16.51%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Mine	Environmental → Terrestrial → Geologic → Mine	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027066	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1000207922	3300004091	Bog Forest Soil	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGYVLTNWRDQQLRTKKLKINRK*
Ga0062387_1011985331	3300004091	Bog Forest Soil	MDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDRK*
Ga0066672_105424043	3300005167	Soil	MNAVSLASLPHLLSSLAFDDGSLALIALLIGMAGGWTLTGWREQIRAKKAAKSDPKP*
Ga0066679_100505745	3300005176	Soil	LLSSLAFDDGSLALIALLIGMAGGWTLTGWREQIRAKKAAKSDPKP*
Ga0074072_100246114	3300005260	Soil	MDLSSLGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKPQ*
Ga0070683_1003222862	3300005329	Corn Rhizosphere	MDLSFIGSLLGSFSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRK*
Ga0066388_1066314952	3300005332	Tropical Forest Soil	KRGLRSMDFSSLGSLLGSLSLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKADRK*
Ga0070666_103277373	3300005335	Switchgrass Rhizosphere	MDLSALGSFFGSFTIDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKADRKS*
Ga0070666_106620742	3300005335	Switchgrass Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRMKKLKANRKP*
Ga0070680_1000153524	3300005336	Corn Rhizosphere	MDLSSFGSLLGSLSLDDSSIALIALLAGMTGGWLLTNWWDQQLRTKKLKANRKS*
Ga0070709_104502291	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSLIGSLLGSFSLDDSSLALIAFLAGMAGGWLLTNWWDQQLRTKKLKANRK*
Ga0070713_1000646112	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSFIGSLLGAVSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRK*
Ga0070713_1009498432	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSSIASLLGSFSIDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKS*
Ga0070713_1012605432	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRTKKLKATRKP*
Ga0070734_107999401	3300005533	Surface Soil	MDFGSLSQLIGSFALDDSSLALIALLAGMAGGWMLNNWRDQQLRTKKLKIQ
Ga0070684_1002710072	3300005535	Corn Rhizosphere	MDLSFIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL*
Ga0070733_111376242	3300005541	Surface Soil	MDLGSLAHLFNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRTRKLKIDRKP*
Ga0068855_1017356261	3300005563	Corn Rhizosphere	RQTGFFASMDVSTIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL*
Ga0066691_106101782	3300005586	Soil	MRMNAVSLASLPHMLSSLAFDDGSLALIALLTGMAGGWTLTGWREQIRAKKAAKSDPKP*
Ga0070762_100261484	3300005602	Soil	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGYILTNWRDQQLRTKKLKINRK*
Ga0070763_102809282	3300005610	Soil	PHTKRGFAAMDLGSLPHLFANFTLDDSSLALIALLAGMAGGYILTNWRDQQLRTKKLKINRK*
Ga0068856_1025347731	3300005614	Corn Rhizosphere	MDLSALGSFFGSFTIDDSSLALIALLAGMAGGWTLTNWRDQQLRIKKLKADRKS*
Ga0068863_1011533171	3300005841	Switchgrass Rhizosphere	MDLSFFGSLLGSLPLDDSSLALIALLAGMSGGWLLTNWWDQQLRTKKLKADRKPQ*
Ga0068858_1000787204	3300005842	Switchgrass Rhizosphere	MNMISSLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKARKARIDRKP*
Ga0068860_1014161642	3300005843	Switchgrass Rhizosphere	MDFSSLGSLPHLLSSFTLDDSSLALIALLAGMAGGWVLTNWRDQQLKTKKMKINRDRQ*
Ga0073928_103946132	3300006893	Iron-Sulfur Acid Spring	MDLGSLPHLFNSLTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK*
Ga0105240_100085476	3300009093	Corn Rhizosphere	MDLSSLGSLISSLTLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL*
Ga0105240_100223092	3300009093	Corn Rhizosphere	MEFGTLSQLIGSFTLDDSSLALIALLAGMAGGWMINNWRDQQLRTKKLKVERK*
Ga0105240_100610676	3300009093	Corn Rhizosphere	MDLASLGSLPHLLGSLALDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKVDRKD*
Ga0105240_105597032	3300009093	Corn Rhizosphere	MDLSSLGSLISSLTLDDSSLALIALLAGMAGGWFLTNWWDQQLRMKKLKANRKL*
Ga0105240_112113902	3300009093	Corn Rhizosphere	MNVISLASLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKAKKAKIGRKP*
Ga0105247_105506751	3300009101	Switchgrass Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMACGWVLTNWWDQQLRMKKLKAN
Ga0105247_110664773	3300009101	Switchgrass Rhizosphere	MNVISLASLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLK
Ga0105237_120513332	3300009545	Corn Rhizosphere	MNVISLASLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKAKKAKIDRKP*
Ga0105238_102685904	3300009551	Corn Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRTKKLK
Ga0105238_105262892	3300009551	Corn Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMSGGWLLTNWWDQQLRTKKLKADRKPQ*
Ga0126373_113281041	3300010048	Tropical Forest Soil	MDFGSLAHLLNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRMRKLKVTRKP*
Ga0134125_102193311	3300010371	Terrestrial Soil	MDVSTIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKS*
Ga0134125_125984261	3300010371	Terrestrial Soil	MDLSHFGSIFSSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRIKKLKADRKS*
Ga0134128_126744272	3300010373	Terrestrial Soil	MDLSAIGSLLGSVTLDDSSLALIALLAGMAAGWTLTNWRDSSCGRGG*
Ga0134126_1000824212	3300010396	Terrestrial Soil	MDFSSLSSLLSSFTLDDSSLALIALLAGMAAGWTLTNWRDQQLRMKKLKANRKL*
Ga0126356_107711361	3300010877	Boreal Forest Soil	LGSLPHLFNSLTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK*
Ga0137413_116147541	3300012924	Vadose Zone Soil	MHFASLASSLPHYLSSFALDDSSLALIALLAGMAGGWTLTGWRDQLKAKRAKINRKP*
Ga0137416_103640514	3300012927	Vadose Zone Soil	MHFASLASSLPHYLSSFALDDSSLALIALLAGMAGGWTLTGWRDQLKAKRAKVNRKP*
Ga0137416_112375372	3300012927	Vadose Zone Soil	MDLGSLPHLLNSFTFDDSSLALIALLAGMAGGWTLTNWRDQQLRTRQLKVNRKS*
Ga0168317_10079662	3300012982	Weathered Mine Tailings	MDLSFIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKS*
Ga0157374_117103251	3300013296	Miscanthus Rhizosphere	MDLSFFGSLLGSLPLDDSSLALIALLAGMSGGWLLTNWWDQQLRTKK
Ga0163162_134768041	3300013306	Switchgrass Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRM
Ga0157372_112344942	3300013307	Corn Rhizosphere	SMDLSFIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL*
Ga0163163_101428891	3300014325	Switchgrass Rhizosphere	TPNGVKASMDLSSFGSLPHFLSSFTLDDSSLALIALLAGMAGGWVLTNWRDQQLKTKKMKINRDRQ*
Ga0181519_102690771	3300014658	Bog	MDFESLSQLIGSFTLDDSSLALIALLAGMAGGWLLNNWRDQQLRTKKLKIDRK*
Ga0157379_102114311	3300014968	Switchgrass Rhizosphere	MDLSSLGSLPHLLSSFTLDDSSLALIALLAGMAGGWVLTNWRDQQLKTKKMKINRDRQ*
Ga0157379_104856481	3300014968	Switchgrass Rhizosphere	MNVISLASLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKARKARIDRKP*
Ga0137412_113203182	3300015242	Vadose Zone Soil	MHFASLASSLPHYLSSFALDDSSLALIALLAGMAGGWTLTGWRDQLKAKRAKI
Ga0187771_101723773	3300018088	Tropical Peatland	MDLGSLAHLFNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRTRKLKIDRKP
Ga0181512_15458762	3300019270	Peatland	QTRGFASMDFESLSQLIGSFTLDDSSLALIALLAGMAGGWLLNNWRDQQLRTKKLKIDRK
Ga0179596_103592202	3300021086	Vadose Zone Soil	DLGSLPHLFNSLTLDDSSLALIALLVGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0210400_107734271	3300021170	Soil	MDLGSLPHLLNSFTLDDSSLALVALLAGMAAGWTLTNWRDQQLRTRQLKVNRKS
Ga0210388_100224796	3300021181	Soil	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGYVLTNWRDQQLRTKKLKINRK
Ga0210393_110506951	3300021401	Soil	MDLGSLTHVLNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRARKLKIDRKP
Ga0210393_113726102	3300021401	Soil	AMDLGSLPHLFANFTLDDSSLALIALLAGMAGGYVLTNWRDQQLRTKKLKINRK
Ga0210389_111962212	3300021404	Soil	MDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIERK
Ga0210387_112542991	3300021405	Soil	MDLGSLPHLFNSLTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0210386_114669972	3300021406	Soil	RGFAAMDLGSLPHLFNSLTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0210390_105979432	3300021474	Soil	MDLGSLTHLLNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRTRKLKIDRKP
Ga0242664_11295641	3300022527	Soil	AKRGFAAMDLGSLPHLFANFTLDDSSLALIALLAGMAGGYILTNWRDQQLRTKKLKINRK
Ga0242666_11890012	3300022721	Soil	MDLGSLLPHLFNSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0242657_11353651	3300022722	Soil	LQVNHVTVGRQTGNQAKRGEITSMDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIERK
Ga0224565_10138231	3300024176	Plant Litter	MDLGSLPHLFASLTDSSLALIALLAGMAGGWTLTNWRDNQLRTKKLKINRK
Ga0207680_108509281	3300025903	Switchgrass Rhizosphere	MDLSALGSFFGSFTIDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKADRKS
Ga0207695_100637784	3300025913	Corn Rhizosphere	MDLASLGSLPHLLGSLALDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKVDRKD
Ga0207695_102316101	3300025913	Corn Rhizosphere	MDLSSLGSLISSLTLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKK
Ga0207695_103965202	3300025913	Corn Rhizosphere	MNVISLASLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKAKKAKIGRKP
Ga0207695_104411242	3300025913	Corn Rhizosphere	MTTTPNGVYAAMDLSSLGSLISSLTLDDSSLALIALLAGMAGGWFLTNWWDQQLRMKKLKANRKL
Ga0207695_104506091	3300025913	Corn Rhizosphere	MEFGTLSQLIGSFTLDDSSLALIALLAGMAGGWMINNWRDQQLRTKKLKVERK
Ga0207671_113920691	3300025914	Corn Rhizosphere	HAKRGYASMDLSSLGSLISSLTLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL
Ga0207693_112806651	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSSLGSLVGHFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKANRKP
Ga0207660_100283204	3300025917	Corn Rhizosphere	MDLSSFGSLLGSLSLDDSSIALIALLAGMTGGWLLTNWWDQQLRTKKLKANRKS
Ga0207687_109991892	3300025927	Miscanthus Rhizosphere	MDLSFFGSLLGSLPLDDSSLALIALLAGMSGGWLLTNWWDQQLRTKKLKADRKPQ
Ga0207700_102154162	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSFIGSLLGAVSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRK
Ga0207700_109744632	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSSIGSLLGSFSIDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKS
Ga0207700_119647351	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRTKKLKATRKP
Ga0207664_116585681	3300025929	Agricultural Soil	MDLSLIGSLLGSFSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKANRKL
Ga0207703_100193334	3300026035	Switchgrass Rhizosphere	MNMISSLPHLLSSFALDDSSLALIALLAGMAGGWTLTGWREQLKARKARIDRKP
Ga0207674_121352261	3300026116	Corn Rhizosphere	LIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRMKKLRANRKP
Ga0209234_11545492	3300026295	Grasslands Soil	MNAVSLASLPHLLSSLAFDDGSLALISLLTGMAGGWTLTGLREQIRAKKAAKSDPKP
Ga0208236_10162092	3300027066	Forest Soil	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGYILTNWRDQQLRTKKLKINRK
Ga0209006_103441383	3300027908	Forest Soil	MDFESLSQLIGSFTLDDSSLALIALLAGMAGGWLLNNWRDQQLRTKKLKIDRK
Ga0268266_1000042011	3300028379	Switchgrass Rhizosphere	MDLSSLGSLIGSLSLDDSSLALIALLAGMAGGWVLTNWWDQQLRMKKLKANRKP
Ga0137415_106504891	3300028536	Vadose Zone Soil	MHFASLASSLPHYLSSFALDDSSLALIALLAGMAGGWTLTGWRDQLKAKRAKVNRKP
Ga0137415_108164991	3300028536	Vadose Zone Soil	MDLGSLPHLFNSLTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTRQLKVNRKS
Ga0311372_102800432	3300030520	Palsa	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGWTLTNWRDNQLRTKKLKVNRK
Ga0075384_107336622	3300030841	Soil	SQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDRK
Ga0302314_101694081	3300030906	Palsa	AAMDLGSLPHLFANFTLDDSSLALIALLAGMAGGWTLTNWRDNQLRTKKLKVNRK
Ga0170823_162951452	3300031128	Forest Soil	MDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDRK
Ga0170824_1118997764	3300031231	Forest Soil	QLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDRK
Ga0265331_100378882	3300031250	Rhizosphere	MDLSFIGSLLGSLSLDDSSLALIALLAGMAGGWLLTNWWDQQLRTKKLKADRKSQ
Ga0170820_177922542	3300031446	Forest Soil	AKRGELTSMDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDR
Ga0170818_1040842862	3300031474	Forest Soil	ENQAKRGELTSMDFGSLSQLIGSFALDDSSLALIALLAGMAGGWLLNNWRDQQLRTRKLKIDRK
Ga0310686_1045614641	3300031708	Soil	MDLGSLPHLFANFTLDDSSLALIALLAGMAGGWMLTNWRDNQLRTKKLKVNRK
Ga0310686_1093759213	3300031708	Soil	MEFGSLSQFISSFALDDSSLALIALLAGMAGGWMLNNWRDQQLRTKKLKIDRK
Ga0310686_1108051553	3300031708	Soil	MDLGSLPHLFNSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0307476_101123942	3300031715	Hardwood Forest Soil	MDLGSLTHLLNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRTRKLKINRKP
Ga0307477_109362141	3300031753	Hardwood Forest Soil	MDLGFLPHLLNSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRMKKLKANRKL
Ga0307478_110301032	3300031823	Hardwood Forest Soil	DFGSLTHLLNSVTLDDSSLALIALLAGMAAGYLLTNWRDQQLRARKLKINRKP
Ga0348332_106050321	3300032515	Plant Litter	MDLGSLPHLFNSLTLDDSSLALIALLVGMAGGWTLTNWRDQQLRTKKLKINRK
Ga0335075_101226644	3300032896	Soil	MDLSSIGSLIGSLSVDDSSLALIALLAGMAGGWLLTNWWDQQLRMKKLKANRKP
Ga0316628_1008989061	3300033513	Soil	MNFDSLGSLPHLLSSLTIDDSSLALVALLAGMAGGWLLTNWRDQQVRMKKAKIDRKP
Ga0372943_0679009_328_492	3300034268	Soil	MDLSAFGSLFGSFTLDDSSLALIALLAGMAGGWTLTNWRDQQLRTKKLKANRKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088388

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences