Metagenome / Metatranscriptome Family F088387

Basic Information
Family ID	F088387
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	41 residues
Representative Sequence	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAEDASG
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.41 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.58 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Most Common Taxonomy
Group	Bacteria (78.899 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.275 % of family members)
Environment Ontology (ENVO)	Unclassified (21.101 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.789 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00583	Acetyltransf_1	32.11
PF12344	UvrB	12.84
PF13508	Acetyltransf_7	11.01
PF02151	UVR	8.26
PF13522	GATase_6	0.92
PF07690	MFS_1	0.92
PF13242	Hydrolase_like	0.92
PF00702	Hydrolase	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.90 %
Unclassified	root	N/A	21.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.90 %
Unclassified	root	N/A	21.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.90 %
Unclassified	root	N/A	21.10 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	77.98 %
Unclassified	root	N/A	21.10 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	77.06 %
Unclassified	root	N/A	21.10 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	70.64 %
Unclassified	root	N/A	21.10 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	45.87 %
Unclassified	root	N/A	21.10 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	45.87 %
Unclassified	root	N/A	21.10 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	45.87 %
Unclassified	root	N/A	21.10 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	45.87 %
Unclassified	root	N/A	21.10 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.92 %
Streptomyces clavuligerus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces clavuligerus	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	45.87 %
Unclassified	root	N/A	21.10 %
Rhodococcus sp. RD6.2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2	0.92 %
Streptomyces clavuligerus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces clavuligerus	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10034078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2114	Open in IMG/M
3300002245\|JGIcombinedJ26739_101216947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300003505\|JGIcombinedJ51221_10332503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300005166\|Ga0066674_10408172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300005537\|Ga0070730_10242612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1191	Open in IMG/M
3300005547\|Ga0070693_101489287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300006102\|Ga0075015_101008099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300006893\|Ga0073928_10404311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	998	Open in IMG/M
3300009665\|Ga0116135_1390501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	563	Open in IMG/M
3300009824\|Ga0116219_10614555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	597	Open in IMG/M
3300010048\|Ga0126373_12810547	Not Available	543	Open in IMG/M
3300010154\|Ga0127503_10142024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	685	Open in IMG/M
3300010162\|Ga0131853_11326603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	531	Open in IMG/M
3300010361\|Ga0126378_10386447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1511	Open in IMG/M
3300012206\|Ga0137380_10992004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	718	Open in IMG/M
3300012361\|Ga0137360_10505764	Not Available	1028	Open in IMG/M
3300012480\|Ga0157346_1000961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1308	Open in IMG/M
3300012917\|Ga0137395_10490030	Not Available	885	Open in IMG/M
3300012958\|Ga0164299_10824862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	664	Open in IMG/M
3300013297\|Ga0157378_10385543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1377	Open in IMG/M
3300014201\|Ga0181537_10041262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3148	Open in IMG/M
3300014654\|Ga0181525_10386613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	768	Open in IMG/M
3300015357\|Ga0134072_10194891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	697	Open in IMG/M
3300016319\|Ga0182033_11084271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300017924\|Ga0187820_1288738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300017926\|Ga0187807_1021652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1983	Open in IMG/M
3300017926\|Ga0187807_1322211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	516	Open in IMG/M
3300017932\|Ga0187814_10030142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2020	Open in IMG/M
3300017932\|Ga0187814_10037842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1786	Open in IMG/M
3300017947\|Ga0187785_10311538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	727	Open in IMG/M
3300017970\|Ga0187783_11120183	Not Available	567	Open in IMG/M
3300017973\|Ga0187780_10448535	Not Available	918	Open in IMG/M
3300017973\|Ga0187780_10901977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300017975\|Ga0187782_10332140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1149	Open in IMG/M
3300018007\|Ga0187805_10584614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	527	Open in IMG/M
3300020581\|Ga0210399_10549503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	958	Open in IMG/M
3300020581\|Ga0210399_10996427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300020582\|Ga0210395_10595886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	830	Open in IMG/M
3300020583\|Ga0210401_10636773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	927	Open in IMG/M
3300021088\|Ga0210404_10394654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	773	Open in IMG/M
3300021171\|Ga0210405_10407484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1070	Open in IMG/M
3300021178\|Ga0210408_10607547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	866	Open in IMG/M
3300021402\|Ga0210385_11547825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	506	Open in IMG/M
3300021403\|Ga0210397_11625524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	501	Open in IMG/M
3300021407\|Ga0210383_10419538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1155	Open in IMG/M
3300021407\|Ga0210383_11786897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	501	Open in IMG/M
3300021433\|Ga0210391_10567344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	891	Open in IMG/M
3300021433\|Ga0210391_10631966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	840	Open in IMG/M
3300024181\|Ga0247693_1007430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350	Open in IMG/M
3300025634\|Ga0208589_1163959	Not Available	502	Open in IMG/M
3300025928\|Ga0207700_10914774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	785	Open in IMG/M
3300025929\|Ga0207664_11797280	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300026078\|Ga0207702_11542753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	658	Open in IMG/M
3300026142\|Ga0207698_11004182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	845	Open in IMG/M
3300026551\|Ga0209648_10245054	Not Available	1331	Open in IMG/M
3300027174\|Ga0207948_1049023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	511	Open in IMG/M
3300027297\|Ga0208241_1024762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	909	Open in IMG/M
3300027651\|Ga0209217_1126059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	719	Open in IMG/M
3300027692\|Ga0209530_1031565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1579	Open in IMG/M
3300027869\|Ga0209579_10179026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1134	Open in IMG/M
3300027908\|Ga0209006_10867196	Not Available	727	Open in IMG/M
3300028015\|Ga0265353_1012935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	772	Open in IMG/M
3300028714\|Ga0307309_10077953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	763	Open in IMG/M
3300028780\|Ga0302225_10522981	Not Available	553	Open in IMG/M
3300028808\|Ga0302228_10210213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	884	Open in IMG/M
3300028877\|Ga0302235_10304854	Not Available	688	Open in IMG/M
3300030054\|Ga0302182_10068070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2	1592	Open in IMG/M
3300030054\|Ga0302182_10124794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1122	Open in IMG/M
3300030056\|Ga0302181_10456103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	544	Open in IMG/M
3300030399\|Ga0311353_11369764	Not Available	577	Open in IMG/M
3300030503\|Ga0311370_10699216	Not Available	1191	Open in IMG/M
3300031234\|Ga0302325_11854388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	752	Open in IMG/M
3300031525\|Ga0302326_12149847	Not Available	714	Open in IMG/M
3300031525\|Ga0302326_12793671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	603	Open in IMG/M
3300031546\|Ga0318538_10636907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300031681\|Ga0318572_10480529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	740	Open in IMG/M
3300031708\|Ga0310686_103794835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1439	Open in IMG/M
3300031708\|Ga0310686_105458286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	775	Open in IMG/M
3300031713\|Ga0318496_10038716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2437	Open in IMG/M
3300031764\|Ga0318535_10374548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	636	Open in IMG/M
3300031765\|Ga0318554_10381566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	800	Open in IMG/M
3300031769\|Ga0318526_10476757	Not Available	510	Open in IMG/M
3300031781\|Ga0318547_10703651	Not Available	628	Open in IMG/M
3300031782\|Ga0318552_10497545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	622	Open in IMG/M
3300031796\|Ga0318576_10195139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces clavuligerus	952	Open in IMG/M
3300031799\|Ga0318565_10366481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300031819\|Ga0318568_10791878	Not Available	588	Open in IMG/M
3300031823\|Ga0307478_11710457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	518	Open in IMG/M
3300031879\|Ga0306919_11524795	Not Available	503	Open in IMG/M
3300031896\|Ga0318551_10144399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1296	Open in IMG/M
3300031954\|Ga0306926_11451101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	794	Open in IMG/M
3300031954\|Ga0306926_13020101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	502	Open in IMG/M
3300031962\|Ga0307479_10861101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	880	Open in IMG/M
3300031962\|Ga0307479_11117340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	754	Open in IMG/M
3300032039\|Ga0318559_10551516	Not Available	538	Open in IMG/M
3300032043\|Ga0318556_10369090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	751	Open in IMG/M
3300032054\|Ga0318570_10064548	Not Available	1547	Open in IMG/M
3300032059\|Ga0318533_10654612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	771	Open in IMG/M
3300032063\|Ga0318504_10238016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	855	Open in IMG/M
3300032094\|Ga0318540_10635704	Not Available	514	Open in IMG/M
3300032160\|Ga0311301_12128862	Not Available	648	Open in IMG/M
3300032174\|Ga0307470_10187485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1308	Open in IMG/M
3300032828\|Ga0335080_10160032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2491	Open in IMG/M
3300033134\|Ga0335073_10073336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4494	Open in IMG/M
3300033134\|Ga0335073_10278698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2019	Open in IMG/M
3300033134\|Ga0335073_11487570	Not Available	654	Open in IMG/M
3300033290\|Ga0318519_10918247	Not Available	541	Open in IMG/M
3300034199\|Ga0370514_083716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	810	Open in IMG/M
3300034819\|Ga0373958_0177511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Aquatic	Environmental → Aquatic	11.01%
Plants	Host-Associated → Plants	4.59%
Arthropoda	Host-Associated → Arthropoda	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.39%
Peat	Environmental → Terrestrial → Peat	10.09%
Freshwater	Environmental → Aquatic → Freshwater	9.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.13%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.28%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.34%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088387

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100340781	3300001867	Forest Soil	VVASLVAAVVAAVCYGVASVMQAVAVRAASHRPAPGTTG
JGIcombinedJ26739_1012169471	3300002245	Forest Soil	MLVSLIAALVAALCYGVASVMQAIAVREASNRAGLTGVD
JGIcombinedJ51221_103325032	3300003505	Forest Soil	VLVSLIAAIVAALLYGVASVMQAIAVRAASNKSAEGATGG
Ga0066674_104081722	3300005166	Soil	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAEAASGGV
Ga0070730_102426121	3300005537	Surface Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRAASNRGLEDAA
Ga0070693_1014892871	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VLVSLVAAIVAAVLYGVAAVMQAIAVRAASNKPAEDASGG
Ga0075015_1010080992	3300006102	Watersheds	MLVSLTAALVAALFYGIASVMQAIAVREASHRQAED
Ga0073928_104043113	3300006893	Iron-Sulfur Acid Spring	VLVSLIAAVVAAVFYGVASVMQAIAVRAASHREPEEELAGVDPGLMVR
Ga0116135_13905011	3300009665	Peatland	MLVSLIAAVVAALCYGVASVMQAIAVREASTRAGLTGV
Ga0116219_106145551	3300009824	Peatlands Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHREPQDAGSGGVDPG
Ga0126373_128105471	3300010048	Tropical Forest Soil	LLVSLVAAIVAAFCYGVASVMQAIAVRAASNRKPAEVAAGGGNVDPGLVV
Ga0127503_101420241	3300010154	Soil	MLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAEDASGGV
Ga0131853_113266032	3300010162	Termite Gut	MVASLVAAIAAALCYGFATVLQSIAARRASNRTVSGA
Ga0126378_103864472	3300010361	Tropical Forest Soil	VLVSLIAAIVAAVLYGVAAVMQAIAVRAASNKPNEDASG
Ga0137380_109920041	3300012206	Vadose Zone Soil	VLVSLVAAIVAALLYGIAAVMQAIAVRAASNKSAEG
Ga0137360_105057642	3300012361	Vadose Zone Soil	VVLVSLIAAIVAALLYGIAAVMQAIAVRAASNKSAEDASGGLDP
Ga0157346_10009614	3300012480	Arabidopsis Rhizosphere	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAEDAS
Ga0137395_104900302	3300012917	Vadose Zone Soil	VLVSLIAAIVAALLYGVASVMQAIAVRAASNKPAQDASGGV
Ga0164299_108248621	3300012958	Soil	MIAAIVAALLYGIAAVMQAIAVRAASNKPAEDASGGV
Ga0157378_103855431	3300013297	Miscanthus Rhizosphere	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAEDASGGVDP
Ga0181537_100412626	3300014201	Bog	VLVSLIAAVLAALCYGVASVMQAVAVREASNRSPAQAGAGG
Ga0181525_103866131	3300014654	Bog	LIAAIVAALLYGIASVIQAIAVRAASHKSAVNASG
Ga0134072_101948911	3300015357	Grasslands Soil	VLVSLVAAIVAALLYGIASVMQAIAVRAASNKAADDASGGVDPGLVVRLLG
Ga0182033_110842711	3300016319	Soil	VLVSLIAANVAAVLYGVDSLMQAIAVRAASNKPAEDAS
Ga0187820_12887382	3300017924	Freshwater Sediment	VLVSLIAAVIAAVCYGVASVMQAIAVRVASQRDPDE
Ga0187807_10216521	3300017926	Freshwater Sediment	LLVSLIAAIVAAVFYGVASVIQAIAVRAASHRAPEQANAGVDPGLVVRMLHQ
Ga0187807_13222111	3300017926	Freshwater Sediment	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHRDPENAASGGVDPGL
Ga0187814_100301424	3300017932	Freshwater Sediment	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHREPQDAGSGGV
Ga0187814_100378424	3300017932	Freshwater Sediment	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHRDPENAASGGV
Ga0187785_103115382	3300017947	Tropical Peatland	VLVSLIAALVAAVLYGVAAVMQAIAVRAASNKTAEDA
Ga0187783_111201832	3300017970	Tropical Peatland	VLVSLIAAVVAAVFYGVASVMQAIAVRAASHRGPDETSAGVDPGLVPRML
Ga0187780_104485352	3300017973	Tropical Peatland	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHREPDDV
Ga0187780_109019772	3300017973	Tropical Peatland	MLVSLIAAVVAAVFYGVASVMQAIAVRAASNREPDETSGGV
Ga0187782_103321402	3300017975	Tropical Peatland	VLVSLIAAIVAAIFYGIASVMQAIAVRAASHRKPDETSAGVDPGLLPRLLH
Ga0187805_105846141	3300018007	Freshwater Sediment	VLVSLIAAIVAAVCYGVASVMQAIAVRTASHRGPEDA
Ga0210399_105495031	3300020581	Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAADASGGVDPHLMVRMLH
Ga0210399_109964271	3300020581	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHREPEDAAFGGVD
Ga0210395_105958861	3300020582	Soil	VLVSMIAAVVAAVFYGIASVMQAIAVRAASTKEPDA
Ga0210401_106367732	3300020583	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRSASHRGLEDVEGGGV
Ga0210404_103946541	3300021088	Soil	VLVSLIAAVVAAVFYGVASVMQAIAVRAASHREPEDEFAGV
Ga0210405_104074842	3300021171	Soil	VLVSLIAAIVAALLYGVASVMQAIAVRAASNKSAED
Ga0210408_106075472	3300021178	Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAA
Ga0210385_115478251	3300021402	Soil	MVASLVAGIVAALLYGIATIMQAIAVRAASHRAAGSQAVGVDPGL
Ga0210397_116255241	3300021403	Soil	VLVSLVAAIVAALLYGTASVMQAIAVRAASIRRPGEAAGGGAKVDP
Ga0210383_104195381	3300021407	Soil	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSALDASGGVDPGLVV
Ga0210383_117868972	3300021407	Soil	VLVSLIAAIVAAIFYGVASVMQAIAVRSASHRGLEDSAAAGV
Ga0210391_105673441	3300021433	Soil	VVLSLVAAVGAALCYGIASVMQAVAVRAASRRPEAGGP
Ga0210391_106319661	3300021433	Soil	VLVSLIAAVVAAVFYGVASVMQAIAVRAASHREPEDEFAGVD
Ga0247693_10074301	3300024181	Soil	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKSAE
Ga0208589_11639592	3300025634	Arctic Peat Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASHKPAVDAAGG
Ga0207700_109147741	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VLVSLIAAVLAALCYGVASVMQAIAVREASTRSQA
Ga0207664_117972801	3300025929	Agricultural Soil	VLVSLGAALAAAFCYGIGAVMQAIAVRAASRRPVLAAAGMTE
Ga0207702_115427532	3300026078	Corn Rhizosphere	VLVSLVAGIVAAVCYGVASVMQAVAARAASARTEGQTGV
Ga0207698_110041821	3300026142	Corn Rhizosphere	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAEDTSGGV
Ga0209648_102450542	3300026551	Grasslands Soil	VLVSLIAAVVAAVLYGVASVMQAIAVRAASRRDPE
Ga0207948_10490231	3300027174	Forest Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAADASGGVDPHL
Ga0208241_10247621	3300027297	Forest Soil	MLASLVAAVIAALCYGVASVLQAVAVREASNRSQF
Ga0209217_11260592	3300027651	Forest Soil	VLVSLIAAIVAALLYGVAAVMQAIAVRAASNKPAEDSSGGL
Ga0209530_10315652	3300027692	Forest Soil	MLVSLIAAIVAALLYGTASVIQAIAVRAASHKSAVDASGGVDPGLVVRL
Ga0209579_101790261	3300027869	Surface Soil	LLVSLIAAIVAAVFYGVASVIQAIAVRAASHRAPEEANAGVDPGLVVRMLHQ
Ga0209006_108671961	3300027908	Forest Soil	MLGSLVAALVSAFCYGVASVMQAIAVRSATHRPDGDRL
Ga0265353_10129352	3300028015	Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAAD
Ga0307309_100779532	3300028714	Soil	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKSAEDASGGVDP
Ga0302225_105229811	3300028780	Palsa	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSAVH
Ga0302228_102102131	3300028808	Palsa	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSAVD
Ga0302235_103048541	3300028877	Palsa	VLVSLIAAVVAAVFYGVASVMQAIAVRSASHRGVQDA
Ga0302182_100680701	3300030054	Palsa	MVASLVAAVFAAVCYGVASVMQAIAARSASHRPLP
Ga0302182_101247942	3300030054	Palsa	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSAVHASGGVDP
Ga0302181_104561032	3300030056	Palsa	VLVSLIAAIVAALLYGIASVMQAIAVRAASHKSATDAAGRLDPGL
Ga0311353_113697641	3300030399	Palsa	MLVSLIAAIVAALLYGIASVIQAIAVRAASHKSAA
Ga0311370_106992161	3300030503	Palsa	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSAVHASGGVDPGLV
Ga0302325_118543881	3300031234	Palsa	VLVSLIAAIVAALLYGIASVIQAVAVRAASHKSAVDASGGIATGL
Ga0302326_121498472	3300031525	Palsa	VLVSLIAAVVAAVFYGVASVMQAIAVRSASHRGVQDAAGGGVDPGLVV
Ga0302326_127936712	3300031525	Palsa	MLVSLIAAIVAALLYGVASVIQAIAVRAASHKSAVHASGGVDPGLVVRLLH
Ga0318538_106369071	3300031546	Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAEDASG
Ga0318572_104805291	3300031681	Soil	MLVSLTAALVAALFYGIASVMQAIAVHEASHRRAQDVA
Ga0310686_1037948353	3300031708	Soil	MLASMIAAIVAALFYGVASVMQAVAVREASNRDPGHAEGVDPGLLVRMLH
Ga0310686_1054582861	3300031708	Soil	LLVSLIAAIIAAVFYGVASVIQAIAVRAASHRPPEEANAGVDPRLVVRM
Ga0318496_100387161	3300031713	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHREPEDVASGGVDPGLVVR
Ga0318535_103745481	3300031764	Soil	VLVSLIAAIVAAVLYGVAAVMQAIAVRAASNKSAE
Ga0318554_103815661	3300031765	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASNRQPEEAASGGVDPGL
Ga0318526_104767572	3300031769	Soil	VLVSLTAAIVAALLYGVASVMQAIAVRAASNKPADGA
Ga0318547_107036512	3300031781	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASNREPEEAASGGVDPGLV
Ga0318552_104975452	3300031782	Soil	VLVSLIAAIVAAVCYGVASVMQAIAVRAASNRGPEDVASGGVDPRLVV
Ga0318576_101951391	3300031796	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHREPEDVASGGVDPGLVVRM
Ga0318565_103664811	3300031799	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHREPDDVASGGVDP
Ga0318568_107918782	3300031819	Soil	VLVSLTAAIVAAILYGVASVMQAIAVRAASNKPAEDAAG
Ga0307478_117104572	3300031823	Hardwood Forest Soil	VGPMLVSLIAALVAALCYGVASVMQAIAVREASNRAG
Ga0306919_115247951	3300031879	Soil	VLVSLIAAVVAAVCYGVASVMQAIAVRAASNREPDETSGGV
Ga0318551_101443993	3300031896	Soil	VLVSLIAAVVAAVCYGVASVMQAIAVRAASNREPDETSAGVDPGLVVRM
Ga0306926_114511011	3300031954	Soil	VLVSLIAAVVAAVFYGVASVMQAIAVRAASNREPDQTS
Ga0306926_130201011	3300031954	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHREPDDVASGGVDPG
Ga0307479_108611012	3300031962	Hardwood Forest Soil	MVAAVFAAVCYGVAAVMQAIAVREASNRPPETTADGTNFDPGLFV
Ga0307479_111173401	3300031962	Hardwood Forest Soil	VLVSLVAAIVAAVLYGVAAVMQAIAVRAASNKPAE
Ga0318559_105515161	3300032039	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRKASHREPEDVASGGVDPG
Ga0318556_103690902	3300032043	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRAASHREPEAVASG
Ga0318570_100645481	3300032054	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRKASHREPEDVASGGVDPGLVVR
Ga0318533_106546122	3300032059	Soil	MLVSLIAAIVAAVFYGVASVMQAIAVRAASNRDPEDAAAG
Ga0318504_102380161	3300032063	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASNRQPEEAASGGVDPGLVVRM
Ga0318540_106357042	3300032094	Soil	VLVSLIAAIVAAVFYGVASVMQAIAVRKASHREPEDV
Ga0311301_121288621	3300032160	Peatlands Soil	VLVSLVAALLAAFCYGLGAVMQAIAVRASSHRPALEEAGVAG
Ga0307470_101874851	3300032174	Hardwood Forest Soil	VLVSLIAAIVAAVLYGIAAVMQAIAVRAASNKPAAD
Ga0335080_101600324	3300032828	Soil	VLVSLIAAIVAAVLYGVASVMQAIAVRAASNKPAEDASGGVDPGLVVRL
Ga0335073_100733364	3300033134	Soil	MAVSLTAALVAALLYGIASVMQAIAVREASNRPSRET
Ga0335073_102786983	3300033134	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHRAPE
Ga0335073_114875702	3300033134	Soil	MLASLLAAVIAALCYGVASVMQAISVRAASRRTAEAVG
Ga0318519_109182472	3300033290	Soil	VLVSMIAAIVAAVFYGVASVMQAIAVRAASHREPEDVASGGVDPGLVVRM
Ga0370514_083716_1_123	3300034199	Untreated Peat Soil	VLVSLIAAIVAALLYGVASVMQAIAVRAASHKSAVDGSGGI
Ga0373958_0177511_1_108	3300034819	Rhizosphere Soil	VLVSLIAAIVAALLYGIAAVMQAIAVRAASNKPAED

Hidden Markov Model


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