Metagenome Family F088375

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088375
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	55 residues
Representative Sequence	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVLGLALL
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.85 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.50% β-sheet: 0.00% Coil/Unstructured: 52.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF08281	Sigma70_r4_2	93.58
PF01687	Flavokinase	1.83
PF07040	DUF1326	0.92
PF09210	BE_C	0.92
PF04542	Sigma70_r2	0.92
PF02738	MoCoBD_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0196	FAD synthase	Coenzyme transport and metabolism [H]	1.83
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.92
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.92
COG1543	Predicted glycosyl hydrolase, contains GH57 and DUF1957 domains	Carbohydrate transport and metabolism [G]	0.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.92
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	52.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	52.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.26 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	47.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3.67 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	2.75 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	47.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3.67 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	2.75 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	47.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3.67 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	2.75 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	47.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3.67 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	2.75 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	47.71 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	3.67 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	2.75 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.92 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02HZZ7O	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
2088090014\|GPIPI_16542343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1532	Open in IMG/M
2170459015\|G14TP7Y01DFHEQ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	789	Open in IMG/M
3300000955\|JGI1027J12803_105996981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	739	Open in IMG/M
3300004153\|Ga0063455_100826353	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300004463\|Ga0063356_104019993	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300005172\|Ga0066683_10241257	All Organisms → cellular organisms → Bacteria → Proteobacteria	1120	Open in IMG/M
3300005175\|Ga0066673_10421870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	782	Open in IMG/M
3300005186\|Ga0066676_10307361	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300005289\|Ga0065704_10673951	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005290\|Ga0065712_10667701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	560	Open in IMG/M
3300005330\|Ga0070690_100168997	All Organisms → cellular organisms → Bacteria → Proteobacteria	1504	Open in IMG/M
3300005332\|Ga0066388_101450081	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300005436\|Ga0070713_100361069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1349	Open in IMG/M
3300005437\|Ga0070710_10168369	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300005450\|Ga0066682_10575142	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300005457\|Ga0070662_100984426	All Organisms → cellular organisms → Bacteria → Proteobacteria	722	Open in IMG/M
3300005530\|Ga0070679_101992957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	530	Open in IMG/M
3300005535\|Ga0070684_102052540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	540	Open in IMG/M
3300005569\|Ga0066705_10898035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	526	Open in IMG/M
3300005574\|Ga0066694_10282558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	789	Open in IMG/M
3300005614\|Ga0068856_100563184	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300005614\|Ga0068856_100617891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1105	Open in IMG/M
3300005615\|Ga0070702_100862379	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300005764\|Ga0066903_101967678	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300005764\|Ga0066903_102910243	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300005764\|Ga0066903_103854959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	805	Open in IMG/M
3300006032\|Ga0066696_10556890	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300006904\|Ga0075424_102687578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	520	Open in IMG/M
3300009092\|Ga0105250_10535105	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009137\|Ga0066709_102413889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300009156\|Ga0111538_10313395	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1985	Open in IMG/M
3300009792\|Ga0126374_11372581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300010046\|Ga0126384_10888935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	804	Open in IMG/M
3300010323\|Ga0134086_10221738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300010326\|Ga0134065_10139583	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300010359\|Ga0126376_11007742	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300010359\|Ga0126376_11048102	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300010359\|Ga0126376_12814291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300010360\|Ga0126372_11309549	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300010360\|Ga0126372_11699408	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300010361\|Ga0126378_11567698	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010366\|Ga0126379_10297678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1617	Open in IMG/M
3300010366\|Ga0126379_12002372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300010396\|Ga0134126_11095613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	889	Open in IMG/M
3300010999\|Ga0138505_100028887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
3300011000\|Ga0138513_100046604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300012201\|Ga0137365_10849305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300012205\|Ga0137362_11614903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535	Open in IMG/M
3300012206\|Ga0137380_10692232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	885	Open in IMG/M
3300012209\|Ga0137379_11794146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300012285\|Ga0137370_10449065	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300012356\|Ga0137371_10083905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2474	Open in IMG/M
3300012361\|Ga0137360_11526062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300012469\|Ga0150984_119019883	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300012519\|Ga0157352_1041055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300012907\|Ga0157283_10008833	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300012924\|Ga0137413_10391042	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300012986\|Ga0164304_10917751	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300015358\|Ga0134089_10355606	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300015374\|Ga0132255_102958663	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300016294\|Ga0182041_10106237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2075	Open in IMG/M
3300016294\|Ga0182041_10174355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1686	Open in IMG/M
3300016319\|Ga0182033_10892391	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300016357\|Ga0182032_11776357	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300017930\|Ga0187825_10304691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	594	Open in IMG/M
3300018054\|Ga0184621_10334694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300018066\|Ga0184617_1086799	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	857	Open in IMG/M
3300018075\|Ga0184632_10055580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1713	Open in IMG/M
3300018465\|Ga0190269_10318908	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300018482\|Ga0066669_11825425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300019356\|Ga0173481_10686841	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300019868\|Ga0193720_1024883	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300019869\|Ga0193705_1000659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7831	Open in IMG/M
3300019877\|Ga0193722_1125871	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300019883\|Ga0193725_1107070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300020002\|Ga0193730_1136656	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300024181\|Ga0247693_1028208	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300024224\|Ga0247673_1057252	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300024331\|Ga0247668_1040164	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300025922\|Ga0207646_10325683	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300025925\|Ga0207650_11380484	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	599	Open in IMG/M
3300025925\|Ga0207650_11437286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300025926\|Ga0207659_11264922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300025929\|Ga0207664_10214414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1667	Open in IMG/M
3300025930\|Ga0207701_10777541	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300025933\|Ga0207706_10266083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1496	Open in IMG/M
3300026327\|Ga0209266_1146149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	964	Open in IMG/M
3300026530\|Ga0209807_1279607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300026536\|Ga0209058_1105823	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300027018\|Ga0208475_1030228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300028536\|Ga0137415_11442322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300028790\|Ga0307283_10052669	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300028799\|Ga0307284_10185169	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300028875\|Ga0307289_10407488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300031469\|Ga0170819_10554989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300031474\|Ga0170818_112225445	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300031562\|Ga0310886_10885780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	567	Open in IMG/M
3300031716\|Ga0310813_11256533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300031805\|Ga0318497_10615753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300031854\|Ga0310904_10566220	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300031938\|Ga0308175_103095347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300031954\|Ga0306926_11134342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	922	Open in IMG/M
3300031996\|Ga0308176_10849035	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300032001\|Ga0306922_10340402	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1610	Open in IMG/M
3300032001\|Ga0306922_12349502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300032013\|Ga0310906_10560610	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300032052\|Ga0318506_10470407	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300033412\|Ga0310810_10818455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	837	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.32%
Host-Associated	Host-Associated	13.76%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.65%
Plants	Host-Associated → Plants	13.76%
Aquatic	Environmental → Aquatic	3.67%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.50%
Sediment	Environmental → Aquatic → Sediment	2.75%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.05%
Loam	Environmental → Terrestrial → Soil → Loam	13.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_00696630	2065487018	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVVGL
GPIPI_01586850	2088090014	Soil	MIDDETLDRQLREAVPYINDDGFTARVIATLPPARREPQWLRAMIVV
4PV_01546040	2170459015	Switchgrass, Maize And Mischanthus Litter	IDDETLDRQLREGCAVRLDDDAFTARVMASLPSARREPGWYVQQFALGLALIGSGVAT
JGI1027J12803_1059969812	3300000955	Soil	EATPYIDDDGFTARVMARLPAAQRDPRWLRAMVLLGLAILGSGIAYVLSGGFIREGMI
Ga0063455_1008263531	3300004153	Soil	MIDEETLDRQLRETVAYIDDDGFTARVMASLPAARDQPRWLRVAILLGLALIGSGVAYLI
Ga0063356_1040199932	3300004463	Arabidopsis Thaliana Rhizosphere	MDKVNPMIDDETLDRQLREAVPYINDDGFTARVIARLPAARPESQWLRAMIVLGLALLGT
Ga0066683_102412571	3300005172	Soil	MIDDETLDRQLREAALYIDDEGFTARVMARLPAARREPRWLRAMILLGLTLLGSGIAYLL
Ga0066673_104218703	3300005175	Soil	MKAMTDDETLDRQLREAMPYIDDEGFTARVMASLPATRREPRWLRAMILL
Ga0066676_103073613	3300005186	Soil	MIDDETLDRQLREAALYIDDEGFTARVMARLPAARREPRWLRAM
Ga0065704_106739512	3300005289	Switchgrass Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVLGLALLGTGIAY
Ga0065712_106677011	3300005290	Miscanthus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTSRVIAMLPVGRREPQWLRAMIVV
Ga0070690_1001689973	3300005330	Switchgrass Rhizosphere	MIDDETLDRQLHEAVPYINDDGFTARVMARLPAARREPQWLRALIVLGLALLGTGVAYVIGGGHVV
Ga0066388_1014500811	3300005332	Tropical Forest Soil	MIDDETLDRQLREAVPYIHDDGFTARVVASLPAARREPQWLRAMIV
Ga0070713_1003610693	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIAMLPVERREPGWLRAMIVVGLALIGTGMAYFL
Ga0070710_101683691	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIAMLPVERREPGWLRAMIVVGLALIG
Ga0066682_105751421	3300005450	Soil	MIDDETLDRQLREAVPYIDDDGFTARVIARLPAARPEPQWLRAMIVLGLAL
Ga0070662_1009844261	3300005457	Corn Rhizosphere	MIDDETLDRQLREAVPYINDDGFTSRVIARLPAARREPQWLRAMIVVGLALIGT
Ga0070679_1019929572	3300005530	Corn Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVVAMLPVGRREPQWLRAMIVIGL
Ga0070684_1020525401	3300005535	Corn Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVVAMLPVGRREPQWLRAMIVIGLALIGT
Ga0066705_108980352	3300005569	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVLGLALL
Ga0066694_102825583	3300005574	Soil	MKAMTDDETLDRQLREAMPYIDDEGFTARVMASLPAARREPRWLRAMILL
Ga0068856_1005631841	3300005614	Corn Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIASLPAARREPQWLRALIVLGLAL
Ga0068856_1006178911	3300005614	Corn Rhizosphere	MIDDETLDLQLREAVPYINDDGFTSRVIAMLPVGRREPQWLRAMIVVGLALIGTGMAYFLSGGG
Ga0070702_1008623792	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIARLPATRHEPRWLHAMIVLGLALVGTGL
Ga0066903_1019676781	3300005764	Tropical Forest Soil	MIDDETLDRQLRDAVLYINDDGFTARVIASLPATRREPRWLRALIVLGLALLGTGVAYVI
Ga0066903_1029102433	3300005764	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAAQQREPQWLRAMIVLGLALLG
Ga0066903_1038549593	3300005764	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVMARLPATRREPQWLRTMIVVGLAL
Ga0066696_105568901	3300006032	Soil	MIDDETLDRQLREAVPYINDHGFTARVIARLPGARREPQWLRAMIVVGLAL
Ga0075424_1026875781	3300006904	Populus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIAMLPVGRREPQWLRAMIVIGLAL
Ga0105250_105351051	3300009092	Switchgrass Rhizosphere	MIDDETLDRQLHEAVPYINDDGFTARVMARLPAARREPQWLRALIVLGLALLGTGVAYVIGG
Ga0066709_1024138892	3300009137	Grasslands Soil	MNAMIDDETLDRQLREAALYIDDEGFTARVMARLPAARREPRWLRAMILL
Ga0111538_103133955	3300009156	Populus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTSRVIAMLPVERREPQWLRAMIVVGLALIG
Ga0126374_113725811	3300009792	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVVARLPATRREPQWLRAMIVVGLALIGT
Ga0126384_108889351	3300010046	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAVRREPQWLRALIVLGLALLGTGVA
Ga0134086_102217381	3300010323	Grasslands Soil	MNAMIDDETLDRQLREAALYIDDEGFTARVMARLPAARREPRWLRAMILLGLTLL
Ga0134065_101395831	3300010326	Grasslands Soil	MIDDETLDRQLREAVPYINDHGFTARVIARLPGARREPQWLRAMIVVGLALIGTGMAY
Ga0126376_110077421	3300010359	Tropical Forest Soil	MIDDETLDRQLREAVPYIHDDGFTASVVASLPAARREPQWLRAMIVLGL
Ga0126376_110481021	3300010359	Tropical Forest Soil	MINDETLDRQLREAVHYTNDDGFTARVIARLPAARREPQWLRAMIVVGLALLGTGMAY
Ga0126376_128142911	3300010359	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAARREPQWLRAMIVVGLAL
Ga0126372_113095491	3300010360	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIAGLPAARHEPQCLRALIVLGLALLGTGVAYVI
Ga0126372_116994082	3300010360	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVMARLPATRREPQWLRAMIIVGLALLGA
Ga0126378_115676982	3300010361	Tropical Forest Soil	MNPMIDDETLDRQLREAVLYLDDDGFTARVMASLPAAPREPRWLRTMIVLGLALLGSGIA
Ga0126379_102976781	3300010366	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAARREPQWLRAMIVVGLALIGTGM
Ga0126379_120023722	3300010366	Tropical Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIAKLPAARREPQWLRAMIVVGLALLGTGIAY
Ga0134126_110956133	3300010396	Terrestrial Soil	MIDDETLDRQLHEAVPYINDDGFTARVMARLPAARREPQWLRALIVLGLALLGTGVAYVIGGGH
Ga0138505_1000288871	3300010999	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARPESQWLRAM
Ga0138513_1000466041	3300011000	Soil	MDKVNPMIDDETLDRQLREAVPYINDDGFTARVIARLPAARPEPQWLRAMIVLGLALLG
Ga0137365_108493051	3300012201	Vadose Zone Soil	MNAMIDDETLDRQLREAVLYIDDEGFTERVMARLPAARREPRWLRAMILLGLTLLGSGIAYLLSGGG
Ga0137362_116149031	3300012205	Vadose Zone Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARSEPRWLRAM
Ga0137380_106922324	3300012206	Vadose Zone Soil	MNAMIDDETLDRQLREATPYIDDEGFTARVTAKLPAARREPRWLRAMIFLGLTLVGSG
Ga0137379_117941462	3300012209	Vadose Zone Soil	MNAMIDDETLDRRLREATPYIDDEGFTARVTAKLPAARREPRWLRAMIFLGLALVGS
Ga0137370_104490651	3300012285	Vadose Zone Soil	MHLVIDDETLDRQLRETVPYIDDDGFTARVMASLPAARPESGWLRAAILL
Ga0137371_100839055	3300012356	Vadose Zone Soil	MNAMIDDETLDRQLREAVAYIDDEGFTGRVMARLPSARREPRWVRAMILIGLAALGSGVAYLLSGGG
Ga0137360_115260622	3300012361	Vadose Zone Soil	MNAMIDDETLDRQLRDATPYIDDEGFTARVMVKLPAARREPRWLRA
Ga0150984_1190198831	3300012469	Avena Fatua Rhizosphere	MIDDETLDRHLHEAVPYINDDGFTARLMASLPAARREPQWLRAMIVVGLALIGTGMAYFLSGG
Ga0157352_10410552	3300012519	Unplanted Soil	MIDDETLDRQLREAVPYINDDGFTARVIATLPAAGREPQWLRAMIVVGLALIGTGMA
Ga0157283_100088334	3300012907	Soil	MIDDETLDRQLREAVPYINDDGFTARVVAMLPVGRREPQWLRAMIVIG
Ga0137413_103910421	3300012924	Vadose Zone Soil	MKAMTDDETLDRQLREAMPYIDDEGFTARVMASLPAARREPRWLRAMILLGLGI
Ga0164304_109177511	3300012986	Soil	MIDDETLDRQLREAVPYINDDGFTSRVIAMLPVGRREPQWLRAMIVVGLALIGTGMAYFL
Ga0134089_103556062	3300015358	Grasslands Soil	MNAMIDDETLDRQLREATPYIDDEGFTARIMAKLPAARREPRWLRAMIFLGLTLV
Ga0132255_1029586631	3300015374	Arabidopsis Rhizosphere	MIDDETLDLQLREAVPYINDDGFTSRVIAMLPVGRREPQWLRAMIVVGLALIGTGMAYFL
Ga0182041_101062374	3300016294	Soil	MIDDETLDRQLREAVSYINDDGFTARVIARLPAPRSEPRWLRTMIVLGLALLGTVVAY
Ga0182041_101743551	3300016294	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARSESRWLRTLIVLGLALL
Ga0182033_108923911	3300016319	Soil	MIDDETLDRQLREAVPYINDDGFTARVVARLPATRREPQWLRAVIVVGLALIGT
Ga0182032_117763571	3300016357	Soil	MIDDETLDRQLREAVLYLDDDGFTARVMATLPTAPREPRWLRIII
Ga0187825_103046911	3300017930	Freshwater Sediment	MIDEETLDRQLRETVPYIDDDGFTARVMGSLPGARREPGWLRAAILLGLALIGSGVAYLI
Ga0184621_103346942	3300018054	Groundwater Sediment	MIDDETLDRQLHEATPYIDDEGFTARVMARLPAARREPRWLRAMIFLGLTL
Ga0184617_10867993	3300018066	Groundwater Sediment	MIDDETLDRQLREAVPYINDDGFTARVIARLPATRREPQWLRAMIVLGLALL
Ga0184632_100555801	3300018075	Groundwater Sediment	MIDDETLDSQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVLGLALLGTGVAY
Ga0190269_103189081	3300018465	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARHEPRWLRAMI
Ga0066669_118254251	3300018482	Grasslands Soil	MIDDETLDRQLREAVPYVNDDGFTARVIARLPAARREPQWLRAMIVLGL
Ga0173481_106868411	3300019356	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPATRREPQWLRAMIVVG
Ga0193720_10248831	3300019868	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARPGPQWLRAMIVLGLAFLG
Ga0193705_10006591	3300019869	Soil	MIDDETLDRQLREAMPYIDDEGFTARVMARLPTARREPRWLRAMILLG
Ga0193722_11258712	3300019877	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARPEPQWLRAMIVLGLALLGTGIAY
Ga0193725_11070702	3300019883	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARPEPQWLRAMIVLGLALLGT
Ga0193730_11366562	3300020002	Soil	MIDDETLDRQLREAVPYINDDGFTARVITRLPAARPEPQWLRAMIVLG
Ga0247693_10282081	3300024181	Soil	MIDDETIDRQLREAVPYINDDGFTARVIARLPATRREPQWLRAMIIVGLALLGTGVAYVIGGGHV
Ga0247673_10572521	3300024224	Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAARREPQWLRALIVLGLALVGTGVAYVIGGGH
Ga0247668_10401641	3300024331	Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPAARREPQWLRALIVLGLALV
Ga0207646_103256831	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNPMIDDEMLDRQLREAVLYIDDDGFTARVMARLPAAPREPRWLRAMVLLGLALLG
Ga0207650_113804841	3300025925	Switchgrass Rhizosphere	DRVKLMIDDETLDRQLRDAVPYINDDGFTARVIARLPAAQREPQWLRAMIVLGLALLGTAVREFFGG
Ga0207650_114372861	3300025925	Switchgrass Rhizosphere	MIDDETLDRQLREAVPYINDDGFTARVIAGLPAARREPQWLRAVIVLGLALLGTGIAYVIGGGHVVR
Ga0207659_112649222	3300025926	Miscanthus Rhizosphere	MIDDETLDLQLREAVSYINDDGFTARVMATLPAARREPQWLRAMIVIGLALIGTGMA
Ga0207664_102144144	3300025929	Agricultural Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVVGLALI
Ga0207701_107775411	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MIDDETLDRQLREAVPYINDDGFTSRVIAMLPVERREPQWLRAMIVVGLALI
Ga0207706_102660831	3300025933	Corn Rhizosphere	MIDDETLDRQLHEAVPYINDDGFTARVMARLPAARREPQWLRALIVLGLALLGTGVAYVIGGGHVVR
Ga0209266_11461493	3300026327	Soil	MIDDETLDRQLREATPYIDDEGFTARVTAKLPAARREPRWLRAMIFLGL
Ga0209807_12796072	3300026530	Soil	MIDDETLDRQLREAVPYVNDDGFTARVIARLPAARREPQWLRAMIVLGLALLGTG
Ga0209058_11058233	3300026536	Soil	MIDDETLDRQLREATPYIDDEGFTARIMAKLPAARREPRWLRAMIFLGLTLVG
Ga0208475_10302281	3300027018	Soil	MIDDETLDRQLREAVPYINDDGFTARVIARLPAVRREPQWLRALIVLGLALLGT
Ga0137415_114423222	3300028536	Vadose Zone Soil	MNAMIDDETLDRQLREAVAYIDDEGFTARVMARLPGARREPRWVRAMILIG
Ga0307283_100526693	3300028790	Soil	MIDDETLDRQLHEAVPYINDDGFTARVIARLPAARREPQWLRAMIVVGLALIGTGMAYFL
Ga0307284_101851692	3300028799	Soil	MSAMIDDETLDRQLREAVPYIDDEGFTARVMARVPAARREPRWLRAMILIGLAALGSGLASFEKA
Ga0307289_104074881	3300028875	Soil	MIDDETLDRQLHEAVPYINDDGFTSRVIARLPAPRREPQWLRAMIVVGLALIGTGMAYFLSGGG
Ga0170819_105549891	3300031469	Forest Soil	MIDDETLDRQLREGVPYINDDGFTARVIARLPAARREPQWLRAMIVVGLALIGTGMAY
Ga0170818_1122254452	3300031474	Forest Soil	MIDDETLDRQLREAVPYINDDGFTARVIASLPATRREPQWLRAMIVVGLAL
Ga0310886_108857802	3300031562	Soil	MIDDETLDRQLREAVPYINDDGFTARVIAALPAARREPQWLRAMIVVG
Ga0310813_112565332	3300031716	Soil	MSAMIDDETLDRQLREAATYIDDDGFTARVMTSLPAPQREPRWLRAMILLGLAIL
Ga0318497_106157532	3300031805	Soil	MIDDETLDRQLREAVSYINDDGFTARVIARLPAPRSEPRWLRTMIVLGLALLGTVVAYVIGGGHI
Ga0310904_105662202	3300031854	Soil	MIDDETLDRQLREAVPYINDDGFTARVIAALPAARREPQWLRAMIVVGL
Ga0308175_1030953471	3300031938	Soil	MIDDETLDRQLREAVPYINDDGFTSRVIAMLPVGRREPQWLRAMIVVGLALIGTGMAYFLSGGG
Ga0306926_111343423	3300031954	Soil	MIDDETLDRQLREAVPYINDEGFTARVIASLPAGRREPRWLRALIVLGLALLGTGVAYVIGGGHVVRE
Ga0308176_108490351	3300031996	Soil	MIDDETLDRRLREAVPYINDDGFTARVIAMLPVGRREPQWLRAMIVIGLAL
Ga0306922_103404023	3300032001	Soil	MIDDEMLDRQLREAVPYINDDGFTARVIARLPAARREPQWLRAMIVAGLA
Ga0306922_123495021	3300032001	Soil	MIDDETLDRQLREAVPYLDDDGFTARVMASLPAAPREPRWLRTMI
Ga0310906_105606102	3300032013	Soil	MIDDETLDRQLREAVPYINDDGFTARVIAGLPAARREPQWLRVLIVVGLALIGTG
Ga0318506_104704071	3300032052	Soil	MIDDETLDRQLREATPYIDDDGFTARVMARLPAAQREARWLRAM
Ga0310810_108184552	3300033412	Soil	MIDDETLDRQLREAVPYINDEGFTARVIARLPPRSEPRWLRAMIVLGLALLGTGIAYVVGGGHVVRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088375

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences