Metagenome / Metatranscriptome Family F088349

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088349
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	41 residues
Representative Sequence	SVLAIHDVVGGTAPARVRQGIAAARKKIEFLREEVHAHA
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (10.092 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.211 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.82% β-sheet: 0.00% Coil/Unstructured: 64.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00583	Acetyltransf_1	73.39
PF13508	Acetyltransf_7	6.42
PF01960	ArgJ	5.50
PF07690	MFS_1	4.59
PF08544	GHMP_kinases_C	3.67
PF13620	CarboxypepD_reg	0.92
PF13561	adh_short_C2	0.92
PF01081	Aldolase	0.92
PF02321	OEP	0.92
PF00266	Aminotran_5	0.92
PF06537	DHOR	0.92
PF13185	GAF_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1364	Glutamate N-acetyltransferase (ornithine transacetylase)	Amino acid transport and metabolism [E]	5.50
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.83
COG0800	2-keto-3-deoxy-6-phosphogluconate aldolase	Carbohydrate transport and metabolism [G]	0.92
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.05 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	43.12 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.01 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	43.12 %
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	8.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33.03 %
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	8.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	8.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	8.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.92 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_187736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	597	Open in IMG/M
3300001084\|JGI12648J13191_1006183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1218	Open in IMG/M
3300001546\|JGI12659J15293_10138100	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300001593\|JGI12635J15846_10295339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1016	Open in IMG/M
3300001593\|JGI12635J15846_10422056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	801	Open in IMG/M
3300002245\|JGIcombinedJ26739_100589714	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005467\|Ga0070706_100104212	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300005542\|Ga0070732_10451063	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005591\|Ga0070761_10149883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1366	Open in IMG/M
3300005591\|Ga0070761_10217921	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1135	Open in IMG/M
3300005602\|Ga0070762_10010790	All Organisms → cellular organisms → Bacteria	4579	Open in IMG/M
3300005834\|Ga0068851_10171741	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1197	Open in IMG/M
3300005921\|Ga0070766_10018907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3646	Open in IMG/M
3300005921\|Ga0070766_10037742	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2665	Open in IMG/M
3300005921\|Ga0070766_11250406	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300006032\|Ga0066696_10101814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1727	Open in IMG/M
3300006052\|Ga0075029_100119774	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1597	Open in IMG/M
3300006052\|Ga0075029_101020568	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300007076\|Ga0075435_101817014	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300007982\|Ga0102924_1117126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1302	Open in IMG/M
3300009520\|Ga0116214_1415144	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009522\|Ga0116218_1232457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	829	Open in IMG/M
3300010333\|Ga0134080_10038494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1847	Open in IMG/M
3300010359\|Ga0126376_12706169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	545	Open in IMG/M
3300010364\|Ga0134066_10197496	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010364\|Ga0134066_10362659	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300010376\|Ga0126381_100019731	All Organisms → cellular organisms → Bacteria	7866	Open in IMG/M
3300011270\|Ga0137391_10463043	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300012096\|Ga0137389_10249876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1490	Open in IMG/M
3300012205\|Ga0137362_10006205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8328	Open in IMG/M
3300012210\|Ga0137378_10653603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	962	Open in IMG/M
3300012361\|Ga0137360_10186686	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1670	Open in IMG/M
3300012917\|Ga0137395_10047922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2671	Open in IMG/M
3300012917\|Ga0137395_10319158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1103	Open in IMG/M
3300012917\|Ga0137395_10753618	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300012923\|Ga0137359_10152318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2061	Open in IMG/M
3300012988\|Ga0164306_11219779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	632	Open in IMG/M
3300014169\|Ga0181531_10653529	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300014200\|Ga0181526_10751986	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300014489\|Ga0182018_10146777	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300014489\|Ga0182018_10498897	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300014501\|Ga0182024_10402810	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1769	Open in IMG/M
3300014501\|Ga0182024_10742145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1205	Open in IMG/M
3300016371\|Ga0182034_11417455	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300017654\|Ga0134069_1371478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	515	Open in IMG/M
3300017936\|Ga0187821_10177621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	812	Open in IMG/M
3300017955\|Ga0187817_10898546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	566	Open in IMG/M
3300018021\|Ga0187882_1335963	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300018030\|Ga0187869_10424597	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300018037\|Ga0187883_10732187	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300018043\|Ga0187887_10976339	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300018086\|Ga0187769_10013570	All Organisms → cellular organisms → Bacteria	5268	Open in IMG/M
3300021180\|Ga0210396_10005217	All Organisms → cellular organisms → Bacteria → Acidobacteria	12597	Open in IMG/M
3300021181\|Ga0210388_10732206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	860	Open in IMG/M
3300021420\|Ga0210394_10121003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2267	Open in IMG/M
3300021432\|Ga0210384_11764329	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021433\|Ga0210391_11208608	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300021445\|Ga0182009_10081299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1443	Open in IMG/M
3300021475\|Ga0210392_10442535	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300022714\|Ga0242671_1021343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	905	Open in IMG/M
3300022717\|Ga0242661_1070368	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300022721\|Ga0242666_1078253	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	738	Open in IMG/M
3300024220\|Ga0224568_1025734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	608	Open in IMG/M
3300024271\|Ga0224564_1060673	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300025604\|Ga0207930_1114779	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300025910\|Ga0207684_10088605	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300025915\|Ga0207693_10169868	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300025929\|Ga0207664_11408648	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300025939\|Ga0207665_10059611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2584	Open in IMG/M
3300026023\|Ga0207677_11377795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	649	Open in IMG/M
3300026078\|Ga0207702_10575966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1103	Open in IMG/M
3300026499\|Ga0257181_1038556	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300027376\|Ga0209004_1056820	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	659	Open in IMG/M
3300027548\|Ga0209523_1127379	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300027651\|Ga0209217_1169589	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027767\|Ga0209655_10093124	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1002	Open in IMG/M
3300027855\|Ga0209693_10080173	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1611	Open in IMG/M
3300027857\|Ga0209166_10030463	All Organisms → cellular organisms → Bacteria	3282	Open in IMG/M
3300027862\|Ga0209701_10383026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	788	Open in IMG/M
3300027903\|Ga0209488_10937526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	604	Open in IMG/M
3300028020\|Ga0265351_1002921	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1269	Open in IMG/M
3300028036\|Ga0265355_1022294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	551	Open in IMG/M
3300028759\|Ga0302224_10204120	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300028776\|Ga0302303_10079747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1223	Open in IMG/M
3300028785\|Ga0302201_10345486	Not Available	585	Open in IMG/M
3300028798\|Ga0302222_10322759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	602	Open in IMG/M
3300028806\|Ga0302221_10417485	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300028807\|Ga0307305_10199559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	920	Open in IMG/M
3300029914\|Ga0311359_10645732	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300030053\|Ga0302177_10076125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1977	Open in IMG/M
3300030399\|Ga0311353_10163974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2112	Open in IMG/M
3300030520\|Ga0311372_11282264	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300030693\|Ga0302313_10431152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	523	Open in IMG/M
3300030740\|Ga0265460_11366875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	695	Open in IMG/M
3300030760\|Ga0265762_1002524	All Organisms → cellular organisms → Bacteria	3301	Open in IMG/M
3300031027\|Ga0302308_10847112	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031233\|Ga0302307_10111581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1428	Open in IMG/M
3300031525\|Ga0302326_11165713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1064	Open in IMG/M
3300031715\|Ga0307476_10224322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1368	Open in IMG/M
3300031715\|Ga0307476_11289957	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031720\|Ga0307469_12375602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57	517	Open in IMG/M
3300031754\|Ga0307475_10353321	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1181	Open in IMG/M
3300031754\|Ga0307475_11539784	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300032180\|Ga0307471_103943566	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032783\|Ga0335079_10976396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	866	Open in IMG/M
3300032783\|Ga0335079_11823306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	591	Open in IMG/M
3300033134\|Ga0335073_10174307	All Organisms → cellular organisms → Bacteria	2698	Open in IMG/M
3300033888\|Ga0334792_053354	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300034124\|Ga0370483_0017123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2108	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.40%
Aquatic	Environmental → Aquatic	11.01%
Plants	Host-Associated → Plants	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.64%
Peat	Environmental → Terrestrial → Peat	12.84%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Sediment	Environmental → Aquatic → Sediment	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.04%
Loam	Environmental → Terrestrial → Soil → Loam	18.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.84%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.09%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024220	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03547450	2199352024	Soil	AESVALPKVLAEHDVVGGTAPARVQQALAAAEQRIAALRREMHAHA
JGI12648J13191_10061833	3300001084	Forest Soil	LAIHDVVGGTAPARVRQGIGVARKKIENLREEVNFHAHA*
JGI12659J15293_101381001	3300001546	Forest Soil	ASVLAVHDVPGGTAPGRVRHAIGITRKKIESLREEAHAHA*
JGI12635J15846_102953393	3300001593	Forest Soil	HDVIGGTAPSRVRQEIAATRKKIESLREEVNFHAHA*
JGI12635J15846_104220563	3300001593	Forest Soil	LASVLAVHDVPGGTAPSRVRHALGMTRKRIESIREEAHAHA*
JGIcombinedJ26739_1005897141	3300002245	Forest Soil	SLKLASVLAVHEVAGGTAPSRVRQAINATRKKIESLREEAHAHA*
Ga0070706_1001042124	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	SVLAVHDVPGGTAPARVRHAIGVTRKKIESLREEAHAHA*
Ga0070732_104510633	3300005542	Surface Soil	KLQSVLAIHDVPGGTAPARVRQAISTVRKKITFLREEVHAHA*
Ga0070761_101498833	3300005591	Soil	LASVLAVHDVAGGTAPNRVRHAIGVTRKKIDALREEAHAHA*
Ga0070761_102179213	3300005591	Soil	FDCEFHECLKLAAVLAIHDVAGGTSPARVRQGIAAARKKIEALREEVNFHAHA*
Ga0070762_100107905	3300005602	Soil	GGTAPARVRQAIKSARTKIESLREEIHAHAQSDLA*
Ga0068851_101717411	3300005834	Corn Rhizosphere	HDVPGGTAPARVRQALGEARRKVETMREDVHAHA*
Ga0070766_100189074	3300005921	Soil	FHECLNLDAVLAIHDVAGGTSPVRVRLGIAATRKKIEALREEVNLHAHA*
Ga0070766_100377421	3300005921	Soil	PIFDKNFYDCLKPAAVLAIHDVIGGTAPSRVRQEIAATRTKIESLREEVNFHAHA*
Ga0070766_112504062	3300005921	Soil	AVHDVPGGTAPARVRQAITIAKRKIHSLREEVHAHA*
Ga0066696_101018141	3300006032	Soil	VLAIHDVPGGTAPARVQKAMKEAREKVNLLRENMHAHA*
Ga0075029_1001197744	3300006052	Watersheds	AVHDVPGGTAPGRVRQAIGAARKKIESLREEIHAHA*
Ga0075029_1010205681	3300006052	Watersheds	SVLAVHDVPGGTAPDRVQQAIGAARKKIESLREEVHAHA*
Ga0075435_1018170142	3300007076	Populus Rhizosphere	LTLPAVLAAHDVVGGTAPGRVRQAIGAARKKIQSLREEVHAHA*
Ga0102924_11171261	3300007982	Iron-Sulfur Acid Spring	ASVLALHDVPGGTAPSRVRQVIIATRKRIESLREEAHAHA*
Ga0116214_14151442	3300009520	Peatlands Soil	SLKLASVLAVHDVAGGTAPSRVRHAIHLARKKIESVREEAHAHA*
Ga0116218_12324573	3300009522	Peatlands Soil	AVHDVPGGTAPGRVRHAISVTRKKIESLREEAHAHA*
Ga0134080_100384943	3300010333	Grasslands Soil	VLAFHNVPGGTAPARVQKAISEARIKINLLRESMHAHA*
Ga0126376_127061691	3300010359	Tropical Forest Soil	IHDVPGGTAPARVRQAIADAKKKISSMREEIHAHA*
Ga0134066_101974961	3300010364	Grasslands Soil	ALSLLSVLAMHDVKGGTAPGQVKQAMAMARKNIESLREEVHAHA*
Ga0134066_103626592	3300010364	Grasslands Soil	ALHNVPGGTAPARVQQAISEARIKINLLRESMHAHA*
Ga0126381_10001973110	3300010376	Tropical Forest Soil	FKQSITLPAVLAAHDVLGGTAPGWVRQAIVAARKKIESVREEVHAHA*
Ga0137391_104630431	3300011270	Vadose Zone Soil	ESLKDFLKPASVLAMHDVAGGTAPARVQKAIAAARKKVDALRGEVHAHA*
Ga0137389_102498761	3300012096	Vadose Zone Soil	HDVPGGTAPQRVRQAIAAARKKVGLLREEAHAHA*
Ga0137362_100062051	3300012205	Vadose Zone Soil	VLNIHDVPGGTAPVRVRQAMADARKKVESMREVVHAHA*
Ga0137378_106536033	3300012210	Vadose Zone Soil	VLAIHDLPGGTAPAFVRQAIAGARKKAGTLREEAHAHA*
Ga0137360_101866863	3300012361	Vadose Zone Soil	LSSVLAIHDVPGGTAPARVQQVISEARIKVNLLRESMHAHA*
Ga0137395_100479221	3300012917	Vadose Zone Soil	LAIHDLPGGTAPAFVRQAIAGARKKAGTLREEAHAHA*
Ga0137395_103191581	3300012917	Vadose Zone Soil	SVLAIHDVLGGTAPARVRSAIAAAKKKVEALREEIHAHA*
Ga0137395_107536181	3300012917	Vadose Zone Soil	KDFLKPASGLAMHDVAGGTAPARVQKAIAAARKKVDALRGEVHAHA*
Ga0137359_101523183	3300012923	Vadose Zone Soil	DVVGGTAPARVRQGLAAAKRKIESLREEVNLHAHA*
Ga0164306_112197792	3300012988	Soil	PSAVLAIHDVPGGTAPQRVQKAIAAARKKVEALREEIHAHA*
Ga0181531_106535291	3300014169	Bog	SVLAIHDVVGGTAPARVRQGIVAARKKIEALREEANVHAHA*
Ga0181526_107519862	3300014200	Bog	LTVHDVPGGTAPNRVRQAISVTRKKIESVREEAHAHA*
Ga0182018_101467771	3300014489	Palsa	HDVVGGTAPARVRQGIAAARKKIEALREEVHFHAHA*
Ga0182018_104988972	3300014489	Palsa	KPAAVLAIHDVVGGTAPARVRQGIAAAKKKIESLRQEVHAHA*
Ga0182024_104028103	3300014501	Permafrost	AAVLAIHDVGGGTAPARVRQGIAAAKKKINSLREEVHAHA*
Ga0182024_107421451	3300014501	Permafrost	QSVLAVHDVPGGTAPARVWQAVAGAQLRIEAIREECHAHA*
Ga0182034_114174552	3300016371	Soil	AAVLAAHDVLGGTAPSRVGPAIVAARKKIESIREEVHAHA
Ga0134069_13714782	3300017654	Grasslands Soil	LHDVPGGTAPSRVRQALAQSKKRIELIREEAHAHA
Ga0187821_101776211	3300017936	Freshwater Sediment	MHDVKGGTAPGQVKQAMAVARKTIESLREEVHAHA
Ga0187817_108985462	3300017955	Freshwater Sediment	KDCLRPAAVLAIHDVVGGTPPGRVRQGILAARKKIESLREEVHAHA
Ga0187882_13359631	3300018021	Peatland	PAAVLAIHDVVGGTAPARVRQGIAAAKEKIESLREEINFHAHA
Ga0187869_104245971	3300018030	Peatland	IHDVVGGTAPARVRQGIGAARKKIESLREALHAHA
Ga0187883_107321872	3300018037	Peatland	KLASVLAVHDVAGGTAPNRVRQAIHVVRKRIEAVREEAHAHA
Ga0187887_109763391	3300018043	Peatland	KLASVLTVHDVPGGTAPNRVRQAISVTRKKIESVREEAHAHA
Ga0187769_100135701	3300018086	Tropical Peatland	LKPAAVLAIHDVVGGTAPGRVRQGIAAAKKKIEGVREEVKIHAHA
Ga0210396_1000521712	3300021180	Soil	SLKLAAVLAVHDVAGGTAPSRVRQAIQITRKKIESLREEAHAHA
Ga0210388_107322063	3300021181	Soil	VLAVHDVPGGTAPGRVRQAIGAARKKIESLREEVHAHA
Ga0210394_101210031	3300021420	Soil	ECLKPASVLAIHDVAGGTAPVRVRQAIAAARKQIETLREEVHAHA
Ga0210384_117643292	3300021432	Soil	NPVFDESFHDYLKPSSVLAIHDVVGGTAPNRVRQGIAEARKKIESLREEVNFHAHT
Ga0210391_112086082	3300021433	Soil	ALKPAAVLAIHDVIGGTAPGRVRQGMAAAKKKIESLREEVKIHAHA
Ga0182009_100812991	3300021445	Soil	LAMHDVKGGTAPSQVKQAVAMARKVVESLREEVHAHA
Ga0210392_104425351	3300021475	Soil	KPASVLAIHDVAGGTAPVRVRQAIAAARKQIETLREEVHAHA
Ga0242671_10213433	3300022714	Soil	KLAAVLAIHDVAGGTTPVRVRQGIGAARKKIEALREEVNFHAHA
Ga0242661_10703681	3300022717	Soil	LKPASVLAIHDVVGGTAPGRVRQAVAAAKEKIQSLREEVKIHAHA
Ga0242666_10782532	3300022721	Soil	DFYECLTLHAVLAVHDVAGGTAPERVRQAIKSARTKIESLREEIHAHAQSDLA
Ga0224568_10257341	3300024220	Plant Litter	LAIHDVAGGTAPARVRQGIAAARKKIEALREEVNLHAHA
Ga0224564_10606732	3300024271	Soil	RECLKPAAVLAIHDVAGGTAPSRVRQGIAAAKNKIQSLREEVRIHAHA
Ga0207930_11147792	3300025604	Arctic Peat Soil	LAIHDVPGGTAPARVRNAITTAKKRIEALREEVHAHA
Ga0207684_100886054	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SVLAVHDVAGGTAPSRVRHAINAARTRIESLREEAHAHA
Ga0207693_101698682	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VWILKIGGPAPVRVRQAIAEARKKVEFMREEIHAHA
Ga0207664_114086481	3300025929	Agricultural Soil	AIHDVAGGTAPMRVKEAIAAARKKSSAQREEAHAHA
Ga0207665_100596113	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	IHDVPGGTAPARVRQAIADAKVKVEAMREDIHAHA
Ga0207677_113777952	3300026023	Miscanthus Rhizosphere	IHDVTGGTAPARVRQAIADARVKVEAMREDIHAHA
Ga0207702_105759663	3300026078	Corn Rhizosphere	LSSVLAMHDVKGGTAPGQVRQAIAAARKTIESLREEVHAHA
Ga0257181_10385562	3300026499	Soil	IHDVQGGTAPARVRQAIVLAKKRISTMLEEIHAHA
Ga0209004_10568201	3300027376	Forest Soil	VHDVPGGTAPGRVRQAIGAARKKIESLREEVHAHA
Ga0209523_11273792	3300027548	Forest Soil	YEALKLASVLAVHDVEGGTAPNRVRQAMGKARKQIESLREEVHAHA
Ga0209217_11695892	3300027651	Forest Soil	LTSVLAIHDVQGGTAPARVRQAIVLAKKRISVMLEEIHAHA
Ga0209655_100931243	3300027767	Bog Forest Soil	LAIHDVAGGTAPARVRQGIAAARKRIESLREEVNFHAHA
Ga0209693_100801733	3300027855	Soil	LKPASVLAIHDVAGGTAPARVRQGIGAARKKIEALREEVNFHAHA
Ga0209166_100304631	3300027857	Surface Soil	VLAIHDVPGGTAPARVRQAVSATRKKIELLREEVHAHA
Ga0209701_103830262	3300027862	Vadose Zone Soil	SVLEIHDVPGGTAPARVRQAIAAARKTIDSLREERHAHA
Ga0209488_109375262	3300027903	Vadose Zone Soil	LAIHDVIGGTAPARVRQEIATARKKIECLREGVHAHA
Ga0265351_10029213	3300028020	Soil	AAVLAIHDVVGGTAPARVRQGIAAAKKTIESLREEIHAHA
Ga0265355_10222941	3300028036	Rhizosphere	CLKPAAVLAMHDVVGGTAPGRVRQGIAAARKKIESLREEVNLHAHA
Ga0302224_102041201	3300028759	Palsa	DVVGGTAPARVRQGIAAARKKIDSLREEVNFHAHA
Ga0302303_100797473	3300028776	Palsa	CLKPASVLAIHDVVGGTAPARVRQGIAAARKKIEFLREEVHAHA
Ga0302201_103454862	3300028785	Bog	LNPAFDAGFQECLNPASVLAIHDVVGGTAPTRVRQGIAAARKKVESLREEVHAHA
Ga0302222_103227592	3300028798	Palsa	ELHTLNPVFDESFRDCLTPASVLAIHDVVGGTAPAQVRQGIAAARKKIEALREEVNFHAH
Ga0302221_104174852	3300028806	Palsa	AVLAIHDVVGGTAPARVRQGIAAARKKIEALREEVNFHAHA
Ga0307305_101995591	3300028807	Soil	LTLQAVLNIHDVPGGTAPARVRQAVIDASVKVESMREEVHAHA
Ga0311359_106457322	3300029914	Bog	ASVLAIHDVVGGTAPARVRQGIAAARKKIESLREEVNLHAHA
Ga0302177_100761253	3300030053	Palsa	ESFRDCLTPASVLAIHDVVGGTAPAQVRQGIAAARKKIEALREEVNFHAHA
Ga0311353_101639743	3300030399	Palsa	KPAAVLAIHDVVGGTAPARVRQGIAAARKKIEALREEVNFHAHA
Ga0311372_112822641	3300030520	Palsa	AAVLAIHDVVGGTAPARVRQGIAAARKKIEALREEVNFHAHA
Ga0302313_104311522	3300030693	Palsa	SVLAIHDVVGGTAPARVRQGIAAARKKIEFLREEVHAHA
Ga0265460_113668752	3300030740	Soil	LTLAAVLGVHDVAGGTAPGRVRQAIKSARTKIESLREEIHAHAQSDLT
Ga0265762_10025245	3300030760	Soil	KPASVLAIHDVVGGTAPARVRQGIAAARKTIEALREEVNFHAHA
Ga0302308_108471121	3300031027	Palsa	AVLAVHDVAGGTAPARVRQAIKSARTKIESLREEIHAHAQSDLA
Ga0302307_101115811	3300031233	Palsa	VHDVAGGTAPARVRQAIKSARTKIESLREEIHAHAQSDLA
Ga0302326_111657133	3300031525	Palsa	QSVIDMHDVPGGTASARVRQAIADARQRVHALRENVHAHA
Ga0307476_102243221	3300031715	Hardwood Forest Soil	AIHDVAGGTTPVRVRQGIGAARKKIEALREEVNFHAHA
Ga0307476_112899572	3300031715	Hardwood Forest Soil	LKPDAVLAIHDVVGGTAPVRVQKAIGAAKHKIGSLREEVHAHA
Ga0307469_123756021	3300031720	Hardwood Forest Soil	IHDVPGGTAPARVAQAIAVARKKAGAVREEAHAHA
Ga0307475_103533211	3300031754	Hardwood Forest Soil	SVLAVHDVVGGTAPSRVRQAINATRKRIESLREEAHAHA
Ga0307475_115397841	3300031754	Hardwood Forest Soil	KLASVLAVHDVPGGTAPSRVRHAINVTRKRIASVREEAHAHA
Ga0307471_1039435662	3300032180	Hardwood Forest Soil	LYLSLPSVLALHNVPGGTAPARVQQAISEARNKIILLRETMHAHA
Ga0335079_109763961	3300032783	Soil	FKPSLTLTAVLGVHDVVGGTAPGRVRQAIGAARKKVESLREEVHAHAHA
Ga0335079_118233061	3300032783	Soil	QQVLAIHDVAGGTAPARVKQALAEGKKKVDALREELHAHA
Ga0335073_101743071	3300033134	Soil	ASVLAIHDVPGGTAPERVRKALGVARNKIQSLREEVHAHA
Ga0334792_053354_1075_1245	3300033888	Soil	SPAFDRGFYDCLKPASVLAIHDVVGGTAPNRVIDGIRAARQKIETLREEVQFHAHA
Ga0370483_0017123_1953_2108	3300034124	Untreated Peat Soil	FDASFQECLKPAAVLAIHDVVGGTAPSRVRQGIAAARKKIESLREEVHAHA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088349

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences