Metagenome Family F088334

Basic Information
Family ID	F088334
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	87 residues
Representative Sequence	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Number of Associated Samples	69
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.92 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (63.303 % of family members)
Environment Ontology (ENVO)	Unclassified (54.128 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.303 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 82.76% β-sheet: 0.00% Coil/Unstructured: 17.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02397	Bac_transf	59.63
PF00929	RNase_T	0.92
PF01381	HTH_3	0.92
PF04392	ABC_sub_bind	0.92
PF00296	Bac_luciferase	0.92
PF02913	FAD-oxidase_C	0.92
PF03592	Terminase_2	0.92
PF00589	Phage_integrase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	59.63
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.92

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012189\|Ga0137388_10198895	Not Available	1805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.17%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.17%
Sediment	Environmental → Aquatic → Sediment	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.66%
Loam	Environmental → Terrestrial → Soil → Loam	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	66.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	63.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25613J43889_100087416	3300002907	Grasslands Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLVGILFRAKIASVRERRTVVTM*
JGI25613J43889_100101544	3300002907	Grasslands Soil	MVGVWKRENTMALEIVIIHVLAGAALGLRFKVMILVPAVTLTMLSAAIFGVTRGDKFWSISVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
JGI25615J43890_10662392	3300002910	Grasslands Soil	VPALTLTMLFAAMVGVTRGDXXWXIAXAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
JGI25616J43925_103147591	3300002917	Grasslands Soil	MALEIVIIHVLAGAALGLRFKVMILVPAVTLTMLFAAMVGVTRGDKFWSIAVGMILLGTAIQFGYLAGILIRAKIASVRAQRT
Ga0066680_104725671	3300005174	Soil	LRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILVRAKIASVRAQRTAVTM*
Ga0066680_108601151	3300005174	Soil	LRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTMEKLGM*
Ga0066388_1000611082	3300005332	Tropical Forest Soil	MALEIVTIFVVGAALGLRFKVMILVPALVSTALFGTIVGLTRGDQFWSIAIIVILLGMAIQVGYLAGILLRATIASVRAQRVRAQTVSVRDRRTAVAI*
Ga0066388_1047985642	3300005332	Tropical Forest Soil	LGLRFKVMTLVPALIFTELFAAIVGLTGGDQFWSIAVAMIMLGTAIQVGYLTGLLFRAKIASV*
Ga0066388_1085454131	3300005332	Tropical Forest Soil	HINKAPFAKRENIMALEIAIILLAGAALGLRFKVMILIPALTLTVLFAVTVGVSRGDPLWSIAVATILLGTAIQVGYLAGILFRAKIAWVDRHHLKRKVGARGTAVTM*
Ga0066691_106506122	3300005586	Soil	IHFLAGAALGLRFKVMILVPPLTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0075023_1000870241	3300006041	Watersheds	MAFGIFIVHVLAGAALGLRFKVTILVPAVTLAMLLAAAFGVAHGDQLWSIVVAMMLLGTAVQLGYLVGVLIRAKFVLVRSRQRTAATM*
Ga0099791_100175444	3300007255	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRERRTAVTM*
Ga0099793_100490752	3300007258	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0099795_100710442	3300007788	Vadose Zone Soil	MALEMVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0099795_104504171	3300007788	Vadose Zone Soil	MALEIVTIFFAGAALGLRFKVMILVPALILTALFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGLLFRAKIASVRAQLIRTKIPSVRERRTAVTM*
Ga0099829_110316032	3300009038	Vadose Zone Soil	LAGAALGLRLKVLILVPALILTALFAAIVGLTRGDQFWSIAVAMILLGTAIQVGYLAGMLFRAKIASARERRTAVTM*
Ga0099830_114228551	3300009088	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTGVTM*
Ga0099828_115149491	3300009089	Vadose Zone Soil	MTLEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKIASVRAQRTAVTMQKLGM*
Ga0099792_102513821	3300009143	Vadose Zone Soil	MALEILIIHFLAGAALGLRFKVMILVPALTLTMLFAVIVGVKRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKSRRLE
Ga0099792_102849112	3300009143	Vadose Zone Soil	MALEIVIIHFLAGVALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERSERRSQCRSAVTM*
Ga0099792_112594221	3300009143	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALSLTMLFAAMVGVKRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKS
Ga0126374_108861251	3300009792	Tropical Forest Soil	MALEIVTIFLAGAALGLRFKVMILVPALVSTALFGTIVGLTRGDQFWSIAIIVILLGMAIQVGYLAGILLRATIVSVRAQRVRAQTVSVRDRRTGVTI*
Ga0099796_102058042	3300010159	Vadose Zone Soil	VMILVPAVTLTMLSARNSKDRGDKFWSISVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0126370_121155632	3300010358	Tropical Forest Soil	PALTLTVLFAVTVGVSRGDPFWSIAVATILLGTAIQVGYLAGILFRAKIARVDRHHLKRKVGARGTAVTM*
Ga0126372_120335891	3300010360	Tropical Forest Soil	MALEIVIILLAGAALGLRFKVMILVPALALTALFAVTVGVSRGDQFWFIGVATILLGTAIQVGYLAGILFRAKIAWVGARRTAVTM*
Ga0126377_114856281	3300010362	Tropical Forest Soil	LSGYSAIVQSTESRFENGENAMALEIVTIFVVGAALGLRFKVMILVPALVSTALFGTIVGLTRGDQFWSIAIIVILLGMAIQVGYLAGILLRATIVSVRAQRVRAQTVSVRDRRTAVAI*
Ga0137392_109733512	3300011269	Vadose Zone Soil	MALEIATIFLAGAALGLRFKVMILVPALISTALFGTIVGLTRGDEFWSIAIAMILLGTAIQVGYLAGILFRAKIASVRAQRIRAKLPSVRERRTAVTM*
Ga0137392_115171901	3300011269	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAIVGVTHGDQFWSIAVAMILLGTAIQVGYLAGILVRAKIASVRAQRA
Ga0137393_103104892	3300011271	Vadose Zone Soil	MTLEIVIIHVLAGATLGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILVRAKIASVRAQRAAVTM*
Ga0137393_103312422	3300011271	Vadose Zone Soil	VGTLQLLNQQSPVWKTENAMALGIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLKRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIAWVRAQ
Ga0137393_104990032	3300011271	Vadose Zone Soil	MALEILIIHFLAGAALGLRFKVMILVPALTLTMLFAVIVGVKRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKSRRLERTERRSQCRD*
Ga0137389_109723642	3300012096	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVMILVPAITLTMLFAAMVGVTRGDKFWSIAVAMILLGTAIQVGYLVGILIRAKIAPVRAQRTAVTM*
Ga0137388_101988952	3300012189	Vadose Zone Soil	MALEILIIHFLAGAALGLRFKVMILVPALTLTMLFAVIVGVKRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137388_111324922	3300012189	Vadose Zone Soil	MVGVWKRENTMALEIVIIHVLAGAALGLRFKVMILVPAITLTMLFAAMVGVTRGDKFWPIAVAMTLLGTAIQVGYLVGILIRAKIAPVRAQRTAVTM*
Ga0137383_102721612	3300012199	Vadose Zone Soil	MALEILTIFLAGAALGLRFKVMILVPALILAALLAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGLLFRAKLASFRAQRIRAKLPSVRERRTAATM*
Ga0137383_106087261	3300012199	Vadose Zone Soil	MALEMVIIHFLAGAALGLRFKVMILVPTLTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRA
Ga0137382_110272062	3300012200	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILVRAKIASVRAQRTAVTM*
Ga0137363_103941341	3300012202	Vadose Zone Soil	FLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137399_102136331	3300012203	Vadose Zone Soil	MALEIAIIHVLAGVALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERSERRSQCRSAVTM*
Ga0137362_100893184	3300012205	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILLPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLVGILFRAKIASVRERRTVVTM*
Ga0137362_103998572	3300012205	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137362_109331401	3300012205	Vadose Zone Soil	GFEWVLCNCPINGAPFGKRENAMALEIVTIFFAGAALGLRFKVMILVPALILTALFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGLLFRAKIASVRAQLIRTKIPSVRERRTAVTM
Ga0137362_112959351	3300012205	Vadose Zone Soil	TVGLIGAEQTLTMLFAAIVGVARGDQFWSIAVAMILLGTAIQIGYLAGILIRAKIASVRAQRTAVTMEKLGM*
Ga0137376_104679312	3300012208	Vadose Zone Soil	MVGVWKRENTMALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTMEKLGM*
Ga0137377_102894371	3300012211	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137387_103972483	3300012349	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRDDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTMEKLGM*
Ga0137385_108604022	3300012359	Vadose Zone Soil	MALEMVIIHFLAGAALGLRFKVMILVPAVTLTMLSAAIFGVTRGDKFWSISVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137360_102046781	3300012361	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVRRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137360_113236312	3300012361	Vadose Zone Soil	LRFRVMILVPALTLTMLFAAIVGVARGDQFWSITVAMILLGTAIQIGYLAGILIRAKIASVRAQRTAVTM*
Ga0137361_100101549	3300012362	Vadose Zone Soil	VALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERSERRSQCRSAVTM*
Ga0137358_100973242	3300012582	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTASNCSLAALERAS*
Ga0137358_104364502	3300012582	Vadose Zone Soil	RGPPVWKRESTMALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVRRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137358_104467772	3300012582	Vadose Zone Soil	MALEIAIIHVLAGVALGLRFKVLILVPAVTLTMSFAAIVGVARGDMFWSIAIAMILLVTAIQVGYVAGILIRAKIERSERRSQCRSAVTM*
Ga0137398_100069329	3300012683	Vadose Zone Soil	ILVPALILTALFAAIVGLTRGDQFWSIAVAMILLGTAIQVGYLAGMLFRAKIASARERRTAVTM*
Ga0137398_102529082	3300012683	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIAWVRAQRIRAKIAWVRAQRIRAKIASVRERRTAVTM*
Ga0137398_104724822	3300012683	Vadose Zone Soil	AAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERSERRSQCRSAVTM*
Ga0137397_100202181	3300012685	Vadose Zone Soil	MVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137395_104205972	3300012917	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137395_108685371	3300012917	Vadose Zone Soil	MALEILIIHFLAGAALGLRFKVMILVPALTLTMLFAVIVGVKRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKIASVRAQRTA
Ga0137394_107862892	3300012922	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVVILVPALTLTMLFAAMVGVTRGDQFWSIALAMILLGTAIQVGYLAGILIRAKIASVRAQR
Ga0137394_113606042	3300012922	Vadose Zone Soil	MALEMVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRA
Ga0137359_102152301	3300012923	Vadose Zone Soil	TMALEIGIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137413_111049762	3300012924	Vadose Zone Soil	VGTLQLLNQQSPVWKTENAMALGIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLKRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRERRTAVTM*
Ga0137419_101176484	3300012925	Vadose Zone Soil	MALDIVIIHMLAGAALGLRFTVMILVPALTLTMLFAAIVGVARGDQFWSIAVAMILLGTAIQIGYLAGILIRAKIASVRAQRTAVTMQKLGM*
Ga0137419_105702821	3300012925	Vadose Zone Soil	LGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERSERRSQCRSAVTM*
Ga0137416_101028951	3300012927	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLVGILFRAKIASVRERRTAVTM*
Ga0137410_100166288	3300012944	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRAQRIRAKLPSVRERRTAVTM*
Ga0137410_101246242	3300012944	Vadose Zone Soil	MALEIVFIHVLAGVALGLRFKVLILVPAVTLTMSFSAIVGVARGDMFWSIAIAMILLVTAIQVGYLVGILIRAKIERSERRSQCRSAVTM*
Ga0137418_100912234	3300015241	Vadose Zone Soil	MALEIVIIHFLAGVALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTSIQVGYLVGILIRAKIERSERRSQCRSAVTM*
Ga0137418_101573743	3300015241	Vadose Zone Soil	MILVPALTLTMLFAAMVGVTRGDQFWSIALAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM*
Ga0137412_100782975	3300015242	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLKRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIAWVRAQRIRAKIAWVRAQRIRAKIASVRERRTAVTM*
Ga0187783_105763481	3300017970	Tropical Peatland	MALEIFTIFLVGAALGRRFKVMILVPALISSALFGTIVGLTQGDQFWSIAIAVILLGMAIQVGYLAGVLFRAKIASVRAQRIRAKIASVRERRTAVTI
Ga0187783_109093422	3300017970	Tropical Peatland	MALEIALIYVLAGAALGLRFKVLILAPAVTLTMLFAAIIGITRGDMFWPIAIAMILYVTAIQVGYLAGILIRAKIERSELRSQYRNAVTM
Ga0179592_103292881	3300020199	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRERRTAVTM
Ga0179596_103533421	3300021086	Vadose Zone Soil	VTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLVGILIRAKIERSERRSQCRSAVTM
Ga0179596_106008431	3300021086	Vadose Zone Soil	ILVPALSLTMLFAAMVGVKRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209131_10142473	3300026320	Grasslands Soil	MALEIVIIHVLAGAALGLRFKVMILVPAVTLTMLSAAIFGVTRGDKFWSISVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209131_10341596	3300026320	Grasslands Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLVGILFRAKIASVRERRTVVTM
Ga0209131_10591214	3300026320	Grasslands Soil	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVRRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209131_10638275	3300026320	Grasslands Soil	MALEIVTIFFAGAALGLRFKVMILVPALILTALFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGLLFRAKIASVRAQLIRTKIPSVRERRTAVTM
Ga0257149_10003911	3300026355	Soil	YFQPRGWSRLCFFPWHRFLAGVALGLRFKVMILVPALISTALFGTIVGLTRGDEFWSIAIAMILLGTAIQVGYLAGMLFRAKIASARERRTAVTM
Ga0257150_10027881	3300026356	Soil	FKVVILVPALTLTMLFAAMVGVTRGDQFWSIALAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0257150_10061893	3300026356	Soil	MALEIVIIHVLAGVALGLRFKVLILLPAVNLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIDRSERRSQCRSAVTM
Ga0257150_10101631	3300026356	Soil	MILVPALTLTMLFAAIVGVARGDQFWSIAVAMILLGTAIQIGYLAGILIRAKIASVRAQRTAVTM
Ga0257163_10618321	3300026359	Soil	MALGIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLKRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIAWVRAQRIRAKIAWVRAQRIRAKIASVRERRTAVTM
Ga0257176_10029491	3300026361	Soil	VGTLQLPNHRAPFGKRENAMALEIVTIFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDQFWSIALAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0257171_10512272	3300026377	Soil	FKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRERRTAVTM
Ga0257178_10047003	3300026446	Soil	MALEIATIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAVAMILLGTAIQVGYLAGILFRAKIASVRAQRIRAKLPSVRERRTAVTM
Ga0257178_10588062	3300026446	Soil	VGKRENTMAIEIVIIHMLAGAALGLRFTVMILVPALTLTMLFAAIVGVARGDQFWSIAVAMILTGTAIQIGYLAGILIRAKIASVRAQRTAVTMQKLGM
Ga0257153_10405151	3300026490	Soil	PVWKTENAMALGIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIASVRERRTAVTM
Ga0257181_11025612	3300026499	Soil	PWHRFLAGVALGLRFKVMILVPALISTALFGTIVGLTRGDEFWSIAIAMILLGTAIQVGYLAGMLFRAKIASARERRTAVTM
Ga0257168_10613002	3300026514	Soil	LTLTMLFAAIVGVARGDQFWSIAVAMILLGTAIQIGYLAGILIRAKIASVRAQRTAVTMQKLGM
Ga0257168_11224741	3300026514	Soil	MALGIVTIFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209648_101884283	3300026551	Grasslands Soil	MALEIVIIHMLAGAALGLRFTVMILVPALTLTMLFAAIVGVARGDQFWSIAVAMILLGTAIQIGYLAGILIRAKIASVRGQRTAVTMQKLGR
Ga0209648_103542932	3300026551	Grasslands Soil	MALEIVIIHVLAGAALGLRFKVMILVPAVTLTMLFAAMVGVTRGDKFWSIAVGMILLGTAIQFGYLAGILIRAKIASVRAQRTAVTM
Ga0179587_106907201	3300026557	Vadose Zone Soil	MALEIVIIHFLAGVALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTAIQVGYLAGILIRAKIERCERRSQCRKLWRYPGLARLCGFTFHYRYV
Ga0209179_11542501	3300027512	Vadose Zone Soil	MALEMVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRT
Ga0209076_10538402	3300027643	Vadose Zone Soil	MALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAMVGVRRGDKFWFIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209076_10989521	3300027643	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALILTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209388_10694141	3300027655	Vadose Zone Soil	VFIHVLAGVALGLRFKVLILVPAVTLTMLFAAIVGVARGDMFWSIAIAMILLVTSIQVGYLVGILIRAKIERSERRSQCRSAVTM
Ga0209588_11826401	3300027671	Vadose Zone Soil	MALEIVTIFLAGAALGLRFKVMILVPALILTALFAAIVGLTRGDQFWSIAAAMILLGTAIQVGYLAGILFRAKIAWVRAQRIRAKIASV
Ga0209488_100399112	3300027903	Vadose Zone Soil	MALEILIIHFLAGAALGLRFKVMILVPALTLTMLFAVIVGVKRGDQFWSIAVAMILLGAAIQVGYLAGILIRAKIASVRAQRTAVTM
Ga0209488_102680132	3300027903	Vadose Zone Soil	MNELALEIVTIHFLAGAALGLRFKVMILVPALILTALFAAIVGVTRGDQFWSVAAAMILLGTAIQVGYLAGILIRAKIASVRERRTARSDARLRRAT
Ga0209488_107434172	3300027903	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALSLTMLFAAMVGVKRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKSRRLERTERRSQCRN
Ga0209488_107532962	3300027903	Vadose Zone Soil	MALEIVIIHFLAGAALGLRFKVMILVPALTLTMLFAAMVGVTRGDKFWSIAVAMILLGTAIQVGYLVGILIRAKIAPVRAQRTAVTM
Ga0209069_101402702	3300027915	Watersheds	MAFGIFIVHVLAGAALGLRFKVTILVPAVTLAMLLAAAFGVAHGDQLWSIVVAMMLLGTAVQLGYLVGVLIRAKFVLVRSRQRTAATM
Ga0209526_104987051	3300028047	Forest Soil	MALEIVIIHVLAGAALGLRFKVMILVPALTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRAQQAAVTM
Ga0307471_1025860912	3300032180	Hardwood Forest Soil	MGLEIVIIHILAGAALGLRFKVMILVPAVTLTMLFAAIVGVTRGDQFWSIAVAMILLGTAIQVGYLAGILIRAKIASVRA
Ga0307471_1035534741	3300032180	Hardwood Forest Soil	MGLEIVIIHILAGAALGLRFKVMILVPAVTLTMLFAAIIGVTRGDKFWSIAVSMILLGTAIQVGYLAGGLIAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088334

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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