Metagenome / Metatranscriptome Family F088277

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088277
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	60 residues
Representative Sequence	ELDLGAVAQSVSRNFGSVFGSQMLWVETLDALLGNSVGVPMKAPDELRRVHGEDDLFLA
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	92.66 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.569 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (35.780 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.789 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.13% β-sheet: 0.00% Coil/Unstructured: 52.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00676	E1_dh	30.28
PF14403	CP_ATPgrasp_2	2.75
PF13527	Acetyltransf_9	1.83
PF01402	RHH_1	0.92
PF09107	SelB-wing_3	0.92
PF00575	S1	0.92
PF01663	Phosphodiest	0.92
PF00034	Cytochrom_C	0.92
PF03099	BPL_LplA_LipB	0.92
PF16321	Ribosom_S30AE_C	0.92
PF01914	MarC	0.92
PF16881	LIAS_N	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	30.28
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	30.28
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.92
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.92
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.92
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.10 %
Unclassified	root	N/A	17.43 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.68 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.92 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.92 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.83 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.92 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.92 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.83 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.92 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.92 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.83 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	0.92 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.92 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10031305	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2132	Open in IMG/M
3300004080\|Ga0062385_11025670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	555	Open in IMG/M
3300004091\|Ga0062387_100209128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1185	Open in IMG/M
3300004152\|Ga0062386_100284844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1315	Open in IMG/M
3300005177\|Ga0066690_10791566	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300005468\|Ga0070707_100472238	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1215	Open in IMG/M
3300005471\|Ga0070698_101895503	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005537\|Ga0070730_10457762	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300005557\|Ga0066704_10762944	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005921\|Ga0070766_10997110	Not Available	576	Open in IMG/M
3300006047\|Ga0075024_100646741	Not Available	574	Open in IMG/M
3300006059\|Ga0075017_100584339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	853	Open in IMG/M
3300007788\|Ga0099795_10310521	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300009552\|Ga0116138_1189681	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009624\|Ga0116105_1226651	Not Available	524	Open in IMG/M
3300009635\|Ga0116117_1212049	Not Available	514	Open in IMG/M
3300009643\|Ga0116110_1115032	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300009665\|Ga0116135_1316571	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300009824\|Ga0116219_10655087	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009824\|Ga0116219_10724118	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300009839\|Ga0116223_10350168	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300010339\|Ga0074046_10923126	Not Available	506	Open in IMG/M
3300010341\|Ga0074045_10196148	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300010341\|Ga0074045_11054964	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300010343\|Ga0074044_10031068	All Organisms → cellular organisms → Bacteria	3762	Open in IMG/M
3300010359\|Ga0126376_11403765	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300010379\|Ga0136449_101574202	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300010379\|Ga0136449_101678127	Not Available	959	Open in IMG/M
3300012096\|Ga0137389_11810110	Not Available	506	Open in IMG/M
3300012199\|Ga0137383_10702435	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300012203\|Ga0137399_11175244	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300012361\|Ga0137360_10099206	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300012582\|Ga0137358_10142848	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300012917\|Ga0137395_10994985	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300014156\|Ga0181518_10254110	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300014156\|Ga0181518_10373237	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300014159\|Ga0181530_10045701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2915	Open in IMG/M
3300014159\|Ga0181530_10446663	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300014162\|Ga0181538_10133802	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300014491\|Ga0182014_10077904	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2095	Open in IMG/M
3300014638\|Ga0181536_10421766	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300015264\|Ga0137403_10904121	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300016750\|Ga0181505_10133227	Not Available	502	Open in IMG/M
3300017823\|Ga0187818_10157309	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	989	Open in IMG/M
3300017924\|Ga0187820_1307305	Not Available	523	Open in IMG/M
3300017933\|Ga0187801_10224577	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300017937\|Ga0187809_10233522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300017938\|Ga0187854_10146995	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300017941\|Ga0187850_10139346	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300017946\|Ga0187879_10529546	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300017961\|Ga0187778_10963015	Not Available	589	Open in IMG/M
3300017972\|Ga0187781_10528898	Not Available	847	Open in IMG/M
3300018005\|Ga0187878_1153152	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300018008\|Ga0187888_1281288	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300018018\|Ga0187886_1324684	Not Available	571	Open in IMG/M
3300018022\|Ga0187864_10121888	Not Available	1326	Open in IMG/M
3300018035\|Ga0187875_10306811	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300018038\|Ga0187855_10507848	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300018040\|Ga0187862_10895765	Not Available	508	Open in IMG/M
3300018042\|Ga0187871_10881387	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300018047\|Ga0187859_10141024	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300018047\|Ga0187859_10663990	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300019787\|Ga0182031_1276117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	2767	Open in IMG/M
3300019787\|Ga0182031_1565512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1790	Open in IMG/M
3300020580\|Ga0210403_11244515	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300021432\|Ga0210384_11118636	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300021474\|Ga0210390_10313871	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300022840\|Ga0224549_1026275	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300024295\|Ga0224556_1082862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300026557\|Ga0179587_10800670	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300027570\|Ga0208043_1158688	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300027635\|Ga0209625_1081051	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300027645\|Ga0209117_1086550	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300027663\|Ga0208990_1138038	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300027767\|Ga0209655_10209000	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300027857\|Ga0209166_10313314	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	824	Open in IMG/M
3300027862\|Ga0209701_10026313	All Organisms → cellular organisms → Bacteria → Acidobacteria	3784	Open in IMG/M
3300027884\|Ga0209275_10078551	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300028047\|Ga0209526_10010621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6346	Open in IMG/M
3300028560\|Ga0302144_10008372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3400	Open in IMG/M
3300028565\|Ga0302145_10280877	Not Available	551	Open in IMG/M
3300028746\|Ga0302233_10260920	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300028759\|Ga0302224_10271126	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300028766\|Ga0302269_1000169	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	40046	Open in IMG/M
3300028772\|Ga0302209_10212623	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300028785\|Ga0302201_10000713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	30215	Open in IMG/M
3300028806\|Ga0302221_10463264	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300028873\|Ga0302197_10068098	All Organisms → cellular organisms → Bacteria → Acidobacteria	1893	Open in IMG/M
3300029903\|Ga0247271_102838	All Organisms → cellular organisms → Bacteria → Acidobacteria	3700	Open in IMG/M
3300029919\|Ga0302141_1124594	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300029990\|Ga0311336_11545287	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300030054\|Ga0302182_10286843	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300030580\|Ga0311355_11609650	Not Available	557	Open in IMG/M
3300030618\|Ga0311354_11122102	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300030838\|Ga0311335_10689628	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031247\|Ga0265340_10070074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	1663	Open in IMG/M
3300031525\|Ga0302326_10456218	All Organisms → cellular organisms → Bacteria	1956	Open in IMG/M
3300031708\|Ga0310686_119909833	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031720\|Ga0307469_12234280	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031754\|Ga0307475_10429034	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300031754\|Ga0307475_11366586	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032160\|Ga0311301_11153348	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300032180\|Ga0307471_102750502	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032205\|Ga0307472_101708230	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032205\|Ga0307472_101970300	Not Available	584	Open in IMG/M
3300033820\|Ga0334817_020314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1369	Open in IMG/M
3300033826\|Ga0334847_026902	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300033829\|Ga0334854_186546	Not Available	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.14%
Aquatic	Environmental → Aquatic	33.03%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.87%
Freshwater	Environmental → Aquatic → Freshwater	31.19%
Peat	Environmental → Terrestrial → Peat	19.27%
Sediment	Environmental → Aquatic → Sediment	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	31.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.26%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.17%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.42%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.59%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	4.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.67%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.75%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028766	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2	Environmental	Open in IMG/M
3300028772	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_1	Environmental	Open in IMG/M
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033820	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_100313053	3300004080	Bog Forest Soil	LAMDKVAETVSRSFGGVFGCQMLWVETIDMLMGNTVGVPLKVPDELRRLRGDDESFLA*
Ga0062385_110256702	3300004080	Bog Forest Soil	MQKELGRELDVDTVAQAVSRNFGGVFGSQMLWLDTLDALLGNVVGVPLKTPDALRRLRGEDELFLG*
Ga0062387_1002091282	3300004091	Bog Forest Soil	AISRNFGQLFGSQMLWVDTLDSLLGNVVGVPLKEPDSLRRIRGEDDLFFG*
Ga0062386_1002848443	3300004152	Bog Forest Soil	TAVAESVSRNFGSVFGRQMLWVETLDALLGNTIGVPMKVPAELRSLRGEDDLLAT*
Ga0066690_107915662	3300005177	Soil	VAQAVSRNFGGVFGSQMLWVETVDALLGNVVGVPMKVPEELRRLHCEDELLLG*
Ga0070707_1004722382	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LNEVAQSVSRNFGSVFGRQMVWVETMDALLGNSVGLPMKVPDELRRVRGEDDLFHT*
Ga0070698_1018955032	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	SIERELGREVELATVAESVSRNFGSVFESQMLWVETIDALLGNAVGVPVKAPAELRELHGEDDTACA*
Ga0070730_104577622	3300005537	Surface Soil	MAKELGRELDLNDVAQAVSRNFGSVFGSQILWVETIDALLGNSVGVPMKTPEELRRLRGEGDLFLV*
Ga0066704_107629442	3300005557	Soil	RELDMDAVAQAVSRNFGGVFGSQMLWVETVDALLGNVVGVPMKVPEELRRLHGEDELLLG
Ga0070766_109971102	3300005921	Soil	GITARPVISMKNELGHALDLSAVAQSVSRNFGSVFGQQMHWVETVDSLLGNVVGVPLRTPDELRRLRGDDELFLG*
Ga0075024_1006467411	3300006047	Watersheds	FGHVFGSQMVWVETMDALLRNSVGVPMKTPDELRRLRGEDDLFLA*
Ga0075017_1005843392	3300006059	Watersheds	ARELGRDVDAQTVAESVSRKFGLVFGRQILWVETVDALLGNAVGVPVKAPAELRALHGDDDLFLA*
Ga0099795_103105211	3300007788	Vadose Zone Soil	VYASVSRNFGDVFSRQTLGVETLDALLGNSIGVPMKAPEELRAIRGEEDLFLA*
Ga0116138_11896811	3300009552	Peatland	MNEVAQSVSRNFGGVFGSQMLWVETVDALLGHVVGVPLKTPDALRRLHSEDDLAFG*
Ga0116105_12266511	3300009624	Peatland	ELGRELDLNQVEQAVSRNFGNVFGSQMLWVETVDALLGNSVGVPMKPPDELRRVRGDDDLFLA*
Ga0116117_12120491	3300009635	Peatland	AVSGSFGTVFGSQMLWVETVDALLGQAVGVPMRAPEQLRCLHGEEELFRG*
Ga0116110_11150321	3300009643	Peatland	QAVSRNFGSVFESEMLWVETVDALLGNSVGVPLKAPDKLRRVHGDDELFVG*
Ga0116135_13165711	3300009665	Peatland	VSRNFGRVFGSQMLWVETIDALLGHSVGVPVKVPEELRRMRGEDDLFLA*
Ga0116219_106550872	3300009824	Peatlands Soil	VTSMQKELGRDVDLNEVAQAVSRNFGGVFGSQMLWVETLDALFGHVVGVPLKTPEAVRRLRGEDDLALG*
Ga0116219_107241182	3300009824	Peatlands Soil	QSVSRNFGSVFGSQMLWVETLDALLGNSVGVPMRAPEELRRVRGEDDLFLA*
Ga0116223_103501681	3300009839	Peatlands Soil	EVAQSVLRNFGRVFRSQMLWVDTIDALLDNAVGLPMKAPDELRRLRGEDDLIHG*
Ga0074046_109231261	3300010339	Bog Forest Soil	VSRNFGSVFGSEMLWVETIDELLGNAVGVPVKAPDELRRVHGELSGEDDLFLA*
Ga0074045_101961482	3300010341	Bog Forest Soil	QVVSRNFGGVFGSQMLWVETIDALLGNILGVPMSVPEKLRRLDGEDDLFLA*
Ga0074045_110549641	3300010341	Bog Forest Soil	QSVSRNFGSVFASQMLWVETLDALLGNSVGVPMKAPDDLRRVHGDDDLFLA*
Ga0074044_100310685	3300010343	Bog Forest Soil	LNEVAQVVSRNFGGVFGSQMLWVETIDALLGNILGVPMSVPEKLRRLDGEDDLFLA*
Ga0126376_114037652	3300010359	Tropical Forest Soil	TSMSKELGKHVDSGAVAEAVSRNFGTVFQSQMLWLETLDALLGPQTGVPLKAPKELRKLHGDDSSAWA*
Ga0136449_1015742022	3300010379	Peatlands Soil	TSMAKELGRELDLNDVAQAVSRNFGSVFGSQMLWVETVDALLGNSVGLPMKAPDELRRLHGEDGLFHG*
Ga0136449_1016781272	3300010379	Peatlands Soil	SMAKELGRELDLNDVAQAVSRNFGSVFGSQMLWVETIDALMGNGVGLPVKAPKALREMRGEEDVFLA*
Ga0137389_118101101	3300012096	Vadose Zone Soil	VSRNFGGVFGSQTLWVETVDALLGNVVGVPMKVPEELRRLHGEDEPFLG*
Ga0137383_107024351	3300012199	Vadose Zone Soil	AVAQAVSRNFGGVFGSRMLWVETVDALLGNVVGVPMKVPEELRRLHCEDELLLG*
Ga0137399_111752441	3300012203	Vadose Zone Soil	VTSMQKELGREIDLAVVAASVSRNFGSVFSSEMLWVETLDALLGNSIGVPMKVPEELRAIRGQEDSFLA*
Ga0137360_100992061	3300012361	Vadose Zone Soil	SMQKELERELDMDAVAQAVSRNFGGVFGSQMLWVETVDALLGNVVGVPMKVPEELRRLHGEDELLLG*
Ga0137358_101428482	3300012582	Vadose Zone Soil	SMQKELGQELDMGAVAQAVSRNFGGVFGSQMLWVETVDALLGNVVGVPMKVPEELRRLHGEDELLLG*
Ga0137395_109949852	3300012917	Vadose Zone Soil	VSRNFGGVFGSQMLWVETVDALLGNVVGVPMKVPEELRRLHGEDELLLG*
Ga0181518_102541102	3300014156	Bog	SMQKELGRELDLNEVAQSVSRNFGSAFGSQMLWVETLDALLGNRVGVPMRAPEELRRLRGEDDLFFA*
Ga0181518_103732372	3300014156	Bog	SMQKELGRELDLNEVAQSVSRNFGSAFGSQMLWVETLDALLGNSVGVPLKVPDELPRLRGEVNGEDDLFLA*
Ga0181530_100457014	3300014159	Bog	VTSMEKELGRELDLNEVAQAVSRNFGSVFESEMLWVETVDALLGNSVGVPLKAPDKLRRVHGDDELFVG*
Ga0181530_104466632	3300014159	Bog	VTSMQKELGRELDLSEVAQSVSRNFGSVFGSEMLWVGTIDALLGNVVGVPMKAPDELRRVHGEDDLFLA*
Ga0181538_101338021	3300014162	Bog	KELGREVDLNEVVESVSRNFGRVFGSQMLWVETIEALLGHTVGVPMKAPDELRRLRGEPHGEDDLFQG*
Ga0182014_100779043	3300014491	Bog	DWSEVAQSVSRNFGSVFASQMLWVETVDALLGNSVGVPLRVPDELRRLRGEVNGEDDLFLA*
Ga0181536_104217662	3300014638	Bog	DADLNEVAQAVSRNFGGVFGSQMLWVETLDALFGHVVGVPLKTPEAVRRLHGEDDLALG*
Ga0137403_109041212	3300015264	Vadose Zone Soil	AAVAASVSRNFGNAFSSQMLWVETLDALLGNSIGVPMKAPEELRAIHGEEDLFLA*
Ga0181505_101332272	3300016750	Peatland	VTSMQKELGREVEMNDVAQAVSRNFGSVFGSQMLWVETVDALLGNSVGVPMKAPEELRRVRGEDELFVG
Ga0187818_101573092	3300017823	Freshwater Sediment	PVTSMAAELSRELDLNEVAQSVSRNFGSVFESQMLWVETIDALLGNTLGVPVKAPEELRHLRGEDDLFLV
Ga0187820_13073051	3300017924	Freshwater Sediment	HSLSRNFGMVFGRETVWVETIDALLGRTVGVPLKAPDELRRLRREDDLFLA
Ga0187801_102245771	3300017933	Freshwater Sediment	NDVALAVSRNFGRVFGGQMLWVETIDALLGNSVGVPMKAPDELRRLHGKDDALLA
Ga0187809_102335221	3300017937	Freshwater Sediment	MDSVAQAITRHFGRVFDRQILWVDTLDALLGRTVGVPMKEPEELRRLHGDDTRLV
Ga0187854_101469951	3300017938	Peatland	ELDLGAVAQSVSRNFGSVFGSQMLWVETLDALLGNSVGVPMKAPDELRRVHGEDDLFLA
Ga0187850_101393461	3300017941	Peatland	ELGRELDLNEVAQSVSRNFGSVFASQMLWVETLDALLGIAVGVPMKAPEELRRVHGEDDLFLA
Ga0187879_105295461	3300017946	Peatland	LGRELDLNEVAQAVSRNFGSVFGSEMLWVETIDALLGNTVGLPMKVPADLRRLHGEDEFSVG
Ga0187778_109630152	3300017961	Tropical Peatland	DAVAHSLSRKFGSVFGRQMLWVETVDALLGNTVGVPMKAPAELRALRGEDDWIAT
Ga0187781_105288981	3300017972	Tropical Peatland	TVSRNFGGVFGSEMLWVETIDALLGNAVGVPLKAPDELRRLHGEDDFVVS
Ga0187878_11531521	3300018005	Peatland	NEAAQAVSRNFGGVFGSQMLWVETIDALLGNAVGVPMKAPDELRRLRGELNGEDDLFLA
Ga0187888_12812882	3300018008	Peatland	TSIQKELGREVDLNEVARSVSRNFGNVFATQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0187886_13246841	3300018018	Peatland	LGRELDLNAVAQSVSRNFGSVFASQMLWVETLDALLGNSVGVPMKAPDELRRLRGELNGEDDLFLA
Ga0187864_101218881	3300018022	Peatland	MQKELGRELDLNEVAQSLARNFATVFATPMQWLDTIDALFGNTVGVPAKTPDDLRRLRPELYRDDDLFSA
Ga0187875_103068112	3300018035	Peatland	AKMVTSMEKELGRELDLNEVAQAVSRSFGSVFGSKMLWVETIDALLGHVVGVPLKTPEAVRRLRGEDDLALG
Ga0187855_105078482	3300018038	Peatland	NDVAQVVSRNFGTVFGSQMLWVETIDALLGNTVGVPIRAPEELRRLHGEEELLRG
Ga0187862_108957652	3300018040	Peatland	NEVAQAVSRNFGSVFGSEMLWVETIDALLGNTVGLPMKVPADLRRLHGEDEFSVG
Ga0187871_108813872	3300018042	Peatland	RNFGNVFGSQMLWVETVDALLGNSVGVPMKPPDELRRVRGDDDLFLA
Ga0187859_101410242	3300018047	Peatland	ELDLNAVSQSVSRNFGRVFGSQMLWVETIDALLGHSVGVPVKVPEGLRRVRGEDDLFLA
Ga0187859_106639901	3300018047	Peatland	RELDLNRVAQSVSRNFGSMFGSQMLWVENLDALLRPRVGIPMRAPAELRRVRGEDELFLA
Ga0182031_12761175	3300019787	Bog	VTSIQKELGREVDLNEVARSVSRNFGGAFGSQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0182031_15655122	3300019787	Bog	VSRNFGGAFGSQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0210403_112445152	3300020580	Soil	QLDLNEVAQAVSHNFGSVFETKMLWVDTLDALIGNTVGVPMTAPEELRHVRGDDDTSWA
Ga0210384_111186361	3300021432	Soil	SVSRNFGSVFGSQMLWVDTIDALLGNSVGVPMKPPAELQQLQGDDELFLA
Ga0210390_103138711	3300021474	Soil	TSMQKELGRNLDLRDVANAVSRNFGTVFGSQMLWVETVDALLGNSVGVPMKVPATLRQLHGEDDLLLS
Ga0224549_10262751	3300022840	Soil	DVAHSLSRNFGSVFGSQMLWVENLDVLLGLSVGVPMRAPEAVRRLHGDEDWFLA
Ga0224556_10828621	3300024295	Soil	IDLNTVAQSVSRNFGSVFGSQMLWVETIDALLGNSVGVPTRAPEELRRVHGDDDLFLA
Ga0179587_108006701	3300026557	Vadose Zone Soil	DMDEVAQSLARKFGSVFASEILWVETIDALLGNVVGVPMKAPEELRRLHGDDLFLG
Ga0208043_11586881	3300027570	Peatlands Soil	AQAVSRNFGGVFGNQMLCVDTIDALLGNSVGVPMKAPEELRRVRGDDELFAG
Ga0209625_10810512	3300027635	Forest Soil	ELDLDEVAHSLSRNFGPVFGSQMRWLETVDALLGNSVGVPMKAPDELRRMHAEDELFLG
Ga0209117_10865501	3300027645	Forest Soil	MQKELGREVDSNDVAQAVSRNFGGVFGSQMLWVETVDALLGSVVGVPMKVPEELRRLHGEDELLLG
Ga0208990_11380381	3300027663	Forest Soil	EVAQSVSRNVGSVFASQILWVETVDALLGNVVGVPMKAPDELRRLHGEDDLFLG
Ga0209655_102090001	3300027767	Bog Forest Soil	RKELGRDVDMDSVGQAISRNFGQLFGSQMLWVDTLDSLLGNVVGVPLKEPDSLRRIRGEDDLFFG
Ga0209166_103133142	3300027857	Surface Soil	MAKELGRELDLNDVAQAVSRNFGSVFGSQILWVETIDALLGNSVGVPMKTPEELRRLRGEGDLFLV
Ga0209701_100263133	3300027862	Vadose Zone Soil	MAKPVTSLQKELGRELDMDAVAQAVSRNFGGVFGSQMLWVETVDALLGHVVGVPLQRPAELRQLHQEDDTHSA
Ga0209275_100785511	3300027884	Soil	GREVDLDSVAQAVSRNFGGVFGSQMLWVDTLDSLLGNAVGVPLKTPESLRRIRGEDELFL
Ga0209526_100106215	3300028047	Forest Soil	FGTVFGSQMRWLETVDALLGNSVGVPMKAPDELRRMHAEDELFLG
Ga0302144_100083724	3300028560	Bog	QSVSRNFGGAFGSQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0302145_102808772	3300028565	Bog	GRELDLNEVAQSVSRNFGGAFGSQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0302233_102609202	3300028746	Palsa	VTSMREELGREVNGNDVAHSLSRNFGSVFGSQMLWVENLDALLGHSVGVPMRAPEAVRRLHGDEDLFLA
Ga0302224_102711261	3300028759	Palsa	ELGRAIDLNEVAQAVARNFGTAFGSQILWVDTVDALLGNVVGVPMKPPDELRRLRGEADLFVG
Ga0302269_100016932	3300028766	Bog	VDLNEVARSVSRNFGGAFGSQMLWVDSIDALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0302209_102126231	3300028772	Fen	VTSMQKELGRELDLSEVAESVSRNFGTVFGRQILWVNTLDALLGNSVGVPLKPPQQLRALHPEDDVFLA
Ga0302201_1000071325	3300028785	Bog	VTSMQNELRRELDLNEVAQSVSRNFGGAFGSQMLWVDSINALLGHSLGVPMKAPAELRHLHGELRGEDDLFLA
Ga0302221_104632642	3300028806	Palsa	NFGSVFGSQMLWVETLDSLLGNVVGVPLKTPDALRRLRGDDELFAG
Ga0302197_100680983	3300028873	Bog	TSMAKELGRELDLNEVAQAVSRNFGSVFGSQMLWVETVDALLGNTIGVPVRPPEELRRFHGDDELFRG
Ga0247271_1028383	3300029903	Soil	MRKELGRELDLKQVEQAVSRNFGNVFGSQMLWVETVDALLGNSVGVPMKPPDELRRVRGDDDLFLA
Ga0302141_11245942	3300029919	Bog	DLNEVAQAVSRNFGSVFGSQMLWVETVDALLGNTIGVPVRPPEELRRFHGDDELFRG
Ga0311336_115452872	3300029990	Fen	QAVSRNFGSVFGSQVLWAETTDALFGSSVGVPVKVPAEVRRLRGEDELFFG
Ga0302182_102868431	3300030054	Palsa	GSQILWVDTVDALLGNVVGVPMKPPDELRRLRGEADLFVG
Ga0311355_116096502	3300030580	Palsa	PVTSMRKEIQNDLDLNQVAHSLSRNFGSVFGSQMLWVETLDSLLGNVVGVPLKTPDALRRLRGDDELFAG
Ga0311354_111221021	3300030618	Palsa	TSMRKEIQNDLDLNQVAHSLSRNFGSVFGSQMLWVETLDSLLGNVVGVPLKTPDALRRLRGDDELFAG
Ga0311335_106896282	3300030838	Fen	DLNEVAQSVSRNFGSVFASQMLWVETIDSLLGNSVGVPMKAPDRLRRLHGELHGEDDLFF
Ga0265328_100627961	3300031239	Rhizosphere	AQSLSRNFGNVFGRQMLWVESVEALLGETVGVPVKAPEELRRMRGEEEIFLA
Ga0265340_100700741	3300031247	Rhizosphere	FGSVFASQILWVETIDSLLGNSVGVPMKVPDELRRLRTELHGEDDLFLG
Ga0302326_104562181	3300031525	Palsa	VNGNDVAHSLSRNFGSVFGSQMLWVENLDVLLGLSVGVPMRAPEAVRRLHGDEDLFLA
Ga0310686_1199098332	3300031708	Soil	AAKAVTSMQKELQREINLNDVAQAVSRNFGRVLRTQMLWVDTIDALLGNSVGVPMKTPDSLRRHRGENEIYLG
Ga0307469_122342802	3300031720	Hardwood Forest Soil	DMDAVAQAISRNFGGVFQSQMLWVETVDALLGNAVGVPMKVPEELRRLHGEDEVFLG
Ga0307475_104290341	3300031754	Hardwood Forest Soil	FGSVLGNQMLWVDTVDALLGNAVGVPMKVPEELRRLHGEDELLLG
Ga0307475_113665861	3300031754	Hardwood Forest Soil	GRELDMDEVARSVSRNFGLVFGGQTLWVDTIDALLGSTVGLPMKAPDDLRRLRGEDDLHL
Ga0311301_111533481	3300032160	Peatlands Soil	TSMAKELGRELDLNDVAQAVSRNFGSVFGSQMLWVETVDALLGNSVGLPMKAPDELRRLHGEDGLFHG
Ga0307471_1027505021	3300032180	Hardwood Forest Soil	VSRNFGSVFGSQMLWAETVDSLLGNVVGVPMKVPEELRRLRGEDKLLLG
Ga0307472_1017082301	3300032205	Hardwood Forest Soil	TAVSRNFGSVFGSQMLSVETIDALIGNGVGVPMKVPDTLRSLHGEDELFLG
Ga0307472_1019703002	3300032205	Hardwood Forest Soil	MAKELGRELDLNEVAQSVSRHFGSVFASQMLWVETLDALQGNSVGLPMKVPGELRRLRGEGDFSHG
Ga0334817_020314_1112_1324	3300033820	Soil	MQKELGRELDLNEVAQSVSRNFGSVFASQMLWVETIDSLLGNSVGVPMKAPDRLRRLHGELHGEDDLFFG
Ga0334847_026902_7_204	3300033826	Soil	LGRELDLGAVAQSVSRNFGSVFGSQMLWVDTIDALLGNSVGVPMKAPDELRQLSGELPEDDLFLA
Ga0334854_186546_281_481	3300033829	Soil	MQKELQREINLNDVAKTVSRNFGSVLRTQMLWIDTIDALLGNRVGVPMKTPDTLRRLRGESEIYLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088277

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences