Basic Information | |
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Family ID | F088182 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 47 residues |
Representative Sequence | KNALALHLLFEHPESLIDIVVANEYLQNVSNLLLALDAPSSC |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 92.66 % |
% of genes from short scaffolds (< 2000 bps) | 92.66 % |
Associated GOLD sequencing projects | 82 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.33 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (89.908 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.945 % of family members) |
Environment Ontology (ENVO) | Unclassified (43.119 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (59.633 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Soil Grasslands Soil Soil Forest Soil Soil Tropical Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
KansclcFeb2_16233140 | 2124908045 | Soil | LHLTKNALALHLLLEDPESLIDIVVANEYLQNVSNLLLAPDAPSSC |
AF_2010_repII_A1DRAFT_100308811 | 3300000597 | Forest Soil | ALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
AF_2010_repII_A100DRAFT_10289714 | 3300000655 | Forest Soil | AALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
AF_2010_repII_A001DRAFT_100493081 | 3300000793 | Forest Soil | FIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
JGI10214J12806_116720123 | 3300000891 | Soil | ALHLLLEDSESLIDIVVANDDLQNVSNLLTALDAPSSC* |
Ga0066395_108388171 | 3300004633 | Tropical Forest Soil | AGLALGRFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYPQNVSNLLLLALDAPSSC* |
Ga0066676_105001933 | 3300005186 | Soil | LAALHLTKNAFALQLLFEDPESLIDIVVANDDLQNVSNLALRAAPSSC* |
Ga0066388_1024332313 | 3300005332 | Tropical Forest Soil | HLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLAPDAPSSC* |
Ga0066388_1042559992 | 3300005332 | Tropical Forest Soil | LAGLALRRFFIRLAALHLTKNALALHLPFEDPESLIDVVVSNDDLQNVSNLLLALGAPSS |
Ga0066388_1054223351 | 3300005332 | Tropical Forest Soil | RLAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDVPSSC* |
Ga0066388_1054382471 | 3300005332 | Tropical Forest Soil | NALTLHLLLEDPERLIDIVVANDDLQNVSNLLLAPDAPSSR* |
Ga0066388_1064741822 | 3300005332 | Tropical Forest Soil | AALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLSLDAPSSC* |
Ga0008090_158205402 | 3300005363 | Tropical Rainforest Soil | LAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
Ga0066706_101036087 | 3300005598 | Soil | FIRLAALHLTKNALALHLFLEHPESLIDIVVAYEYLQNVSNLLPTPDAPASC* |
Ga0066905_1003319363 | 3300005713 | Tropical Forest Soil | LHLSFEDPESLINIVVANEDLQNASNLLLALGAPSSC* |
Ga0066905_1007400713 | 3300005713 | Tropical Forest Soil | LHLLFEHPESLIDIVVSNEYPQNVSNLLLLALDAPSSC* |
Ga0066905_1020817242 | 3300005713 | Tropical Forest Soil | RFFIRLAALHLAKDALALQLLLEDPESLIDIVVANDDLQNVSNLLLALGAPSSC* |
Ga0066903_1050490901 | 3300005764 | Tropical Forest Soil | LLLEDLESLIDIVVSNEDLQNVPNLLLALGAPSSC* |
Ga0066903_1063608851 | 3300005764 | Tropical Forest Soil | FFIRLAALHLAKNALALHLLFEHPESLIDIVVANDDLQNVSNLLLAPDAPSSC* |
Ga0066903_1064932451 | 3300005764 | Tropical Forest Soil | LALHLLFEDSQGLIDIVVANDDLQNVSNLLPAPDAPSSC* |
Ga0066710_1005315711 | 3300009012 | Grasslands Soil | NAFALQLLFEDPESLIDIVVANDDLQNVSNLALRAAPSSCW |
Ga0099829_104972334 | 3300009038 | Vadose Zone Soil | LLFEDPKSLIDIVVANDDLQNVSNLLPAQDARSSC* |
Ga0126374_104616022 | 3300009792 | Tropical Forest Soil | TKNALALHLLFEHPESLIDIVVANEYLQNVSNLLLALDAPSSC* |
Ga0126380_103835074 | 3300010043 | Tropical Forest Soil | ATFHLTKNALALHLLFEDPESLIDIVVANEYLQNVSNLLLALHAPSSC* |
Ga0126380_114285852 | 3300010043 | Tropical Forest Soil | ASDGFCLLAGLALGRFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLSLDAPSSC* |
Ga0126380_120495481 | 3300010043 | Tropical Forest Soil | GRFFIRLTALHLTKNALALHLLLEHPESLIDIVVSNEYLQAVSNLLLAPEAPSSC* |
Ga0126384_102975861 | 3300010046 | Tropical Forest Soil | AGLALRRFFIRLAALHLTKNALTLHLLFEHPESLIDIVVSNEYLQAVSNLLLALNAPSSC |
Ga0126384_112383271 | 3300010046 | Tropical Forest Soil | LAGLALGRFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
Ga0126384_112825371 | 3300010046 | Tropical Forest Soil | LHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSCC* |
Ga0126382_101435234 | 3300010047 | Tropical Forest Soil | LHLLFEHPESLIDIVVSNEYLQAVSNLLLALNAPSSC* |
Ga0126382_104153684 | 3300010047 | Tropical Forest Soil | RLFIRLATLHLTKNALALHLLLEHPESLIDIVVATSTCKMFSNLLPALDAPSSC* |
Ga0126382_106420123 | 3300010047 | Tropical Forest Soil | LHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC* |
Ga0126382_112788401 | 3300010047 | Tropical Forest Soil | KNALALHLLFEHPESLIDIVVANEYLQNVSNLLLALDAPSSC* |
Ga0126370_104085173 | 3300010358 | Tropical Forest Soil | AGLALGRFFIRLAALHLTKNALALHLLLKGPESLIDIVVSNEYLQNVSNLLLAPEAPSSR |
Ga0126372_113781912 | 3300010360 | Tropical Forest Soil | LAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLAPEAPSSR* |
Ga0126378_100903528 | 3300010361 | Tropical Forest Soil | ALHLLFEDPESLIDIVVANEYLQNVSNLLLALHAPSSC* |
Ga0126377_134099322 | 3300010362 | Tropical Forest Soil | HLTKNALALHLLFEDPESLIDIVVANEYLQNVSNLLLALHAPSSC* |
Ga0126381_1002664611 | 3300010376 | Tropical Forest Soil | LHLAKNALALHLLFEHPESLIDIVVSNEYLQAVSNLLLALNAPSSC* |
Ga0126381_1005561236 | 3300010376 | Tropical Forest Soil | HLTNNALALQLLLEHPESLFDIVFANDDLQNVSNLLLRLHAPSSC* |
Ga0126381_1006325764 | 3300010376 | Tropical Forest Soil | ALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPLSC* |
Ga0126383_101370261 | 3300010398 | Tropical Forest Soil | NALALHLLLEDPERLIDIVVANDDLQNVSNLLLAPDAPSSCR* |
Ga0137383_112432512 | 3300012199 | Vadose Zone Soil | IRPAALHLAKNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC* |
Ga0137382_100961551 | 3300012200 | Vadose Zone Soil | NALALHLLLEDSESLIDIVVANDDLQNVSNLLTALDAPSSC* |
Ga0137377_100323901 | 3300012211 | Vadose Zone Soil | LTKNALALHLFLDHPESLIDIVVAYKYLQNVSNLLPAPDAPASC* |
Ga0137377_109215722 | 3300012211 | Vadose Zone Soil | FPGGLARAPDRFRLLAGLALRWFFIRPAALHLAKNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC* |
Ga0137369_107010891 | 3300012355 | Vadose Zone Soil | ALALHLLLEHPESLIDIVVAYEYLQNVSNLLPAPDAPASC* |
Ga0137385_101198151 | 3300012359 | Vadose Zone Soil | ALHLTKNALALHLLLEHPESLIDIVVAYEYLQNVSNLLPTPDAPASC* |
Ga0134049_11129272 | 3300012403 | Grasslands Soil | ARAPDRFRLLAGLALRWFFIRPAALHLAKNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC* |
Ga0137373_105366611 | 3300012532 | Vadose Zone Soil | KNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC* |
Ga0126375_104449904 | 3300012948 | Tropical Forest Soil | TKNALALHLLFEDPESLIDIVVANEYLQNVSNLLLALHAPSSC* |
Ga0126375_107269881 | 3300012948 | Tropical Forest Soil | ALALHLLFEDPESLIDIVVANEYLQNVSNLLLALDAPSSC* |
Ga0134110_101735721 | 3300012975 | Grasslands Soil | LLFEDPESLIDIVVANDDLQNVSNLALRAASSSC* |
Ga0134073_103363363 | 3300015356 | Grasslands Soil | APDRFRLLAGLALRWFFIRPAALHLAKNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC* |
Ga0134089_103220062 | 3300015358 | Grasslands Soil | ELHLPEYAFALEFFLQGAQGLVDVVVANDDLQNVSNLALRAAPSSCW* |
Ga0182036_101411581 | 3300016270 | Soil | IRLAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSR |
Ga0182033_113297051 | 3300016319 | Soil | TFHLTKNALALHLLFEDPESLIDIVVANDDLQNVSNLLLAPDAPSSY |
Ga0182034_120481061 | 3300016371 | Soil | LALHLLLEDPERLIDIVVSNEYLQNVSNLLPALDAPSSC |
Ga0182040_101093957 | 3300016387 | Soil | HLLFEDSQGLFDIVVANDDLQNVSNLLPALHAPSSC |
Ga0182037_101903012 | 3300016404 | Soil | LTKNALALHLLLEDPERLIDIVVSNEYLQNVSNLLPALDAPSSC |
Ga0182039_103592114 | 3300016422 | Soil | LLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0126371_112291151 | 3300021560 | Tropical Forest Soil | RFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0242654_104022571 | 3300022726 | Soil | RLLAGLALGRFFIRLAALHLTKNALALQLLFEDPKSLIDIVVANDDLQNVSNLLPA |
Ga0209761_12016443 | 3300026313 | Grasslands Soil | FFIRPAALHLAKNALALQLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC |
Ga0257179_10558522 | 3300026371 | Soil | ALALHLLLEDSESLIDIVVANDDLQNVSNLLTALDAPSSC |
Ga0209058_11949053 | 3300026536 | Soil | QLLFESPESLIDIVVANEYLQNVSDLPPALDTPSSC |
Ga0209590_101957614 | 3300027882 | Vadose Zone Soil | KNALALHLLLEDSESLIDIVVANDDLQNVSNLLTALDAPSSC |
Ga0307289_102971201 | 3300028875 | Soil | NALALQLLFKNPKSLIDIVVANEYLQNFSDLLLALDARQAVDGAVAVSAF |
Ga0307278_104480602 | 3300028878 | Soil | AKDALALHLLLEHPEGLIDIVVSNDDLQNVSDLLLARFAPSSC |
Ga0318516_101871561 | 3300031543 | Soil | TKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318541_100856831 | 3300031545 | Soil | ALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0318528_100297855 | 3300031561 | Soil | LHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0318528_101219084 | 3300031561 | Soil | LAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPMAVALNAL |
Ga0318528_105998061 | 3300031561 | Soil | FIRLAALHLTKNALALHLLLKGPESLIDIVVSNEYLQNVSNLLLAPEAPSSR |
Ga0310915_103731841 | 3300031573 | Soil | KNALALHLLLEDPERLIDIVVSNEYLQNVSNLLPALDAPSSC |
Ga0318542_101888192 | 3300031668 | Soil | RLAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPMAVALNAL |
Ga0318574_109122272 | 3300031680 | Soil | LHLTKNALSLHLLFEDSQGLFDIVVANDDLQNVSNLLPAQDALASC |
Ga0318496_107237101 | 3300031713 | Soil | FFIRLAALHLTKNALALHLLFEDSQGLFDIVVANDDLQNVSNLLPARDALASC |
Ga0306917_101061826 | 3300031719 | Soil | KNALSLHLLFEDSQGLFDIVVANDDLQNVSNLLPARDALASC |
Ga0306917_110323061 | 3300031719 | Soil | AALHLTKNALALHLLFEDSQGLFDIVVANDDLQNVSNLLPALHAPSSC |
Ga0318493_107874591 | 3300031723 | Soil | LAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318500_104257752 | 3300031724 | Soil | PATFHLTKNALALHLLLEDPERLIDIVVSNEYLQNVSNLLPALDAPSSC |
Ga0318554_104302391 | 3300031765 | Soil | ASDGFCLLAGLALGRFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLSLDAPSSC |
Ga0318509_100939355 | 3300031768 | Soil | ALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0318509_108403551 | 3300031768 | Soil | LLAGLALGRFFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLSLDAPSSC |
Ga0318521_109935801 | 3300031770 | Soil | LHLTKNALSLHLLFEDSQGLFDIVVANDDLQNVSNLLPARDALASC |
Ga0318546_102329624 | 3300031771 | Soil | NALALHLLFEDSQGLFDIVVANDDLQNVSNLLPAPDALASC |
Ga0318547_103225273 | 3300031781 | Soil | LTKNALALHLLLENPERLIDIVVANDDLQNISNLLLAPDAPSSC |
Ga0318548_104890832 | 3300031793 | Soil | HLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPMAVALNAL |
Ga0318503_102622942 | 3300031794 | Soil | LLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318523_102109711 | 3300031798 | Soil | FFIRLAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0310917_111257881 | 3300031833 | Soil | LAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLLSLDAPSSC |
Ga0318517_101078641 | 3300031835 | Soil | AALHLTKNALSLHLLFEDSQGLFDIVVANDDLQNVSNLLPAQDALASC |
Ga0318544_101222794 | 3300031880 | Soil | RLAALHLTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318551_103868631 | 3300031896 | Soil | FFVRLAALHLTKNALSLHLLFEDSQGLFDIVVANDDLQNVSNLLPAQDALASC |
Ga0306923_112162511 | 3300031910 | Soil | LLFEDSQGLFDIVVANDDLQNVSNLLPAPDALASC |
Ga0310912_102176341 | 3300031941 | Soil | LHLLFEHPESLIDIVVSNEYLQNVSNLLLLSLDAPSSC |
Ga0310912_102706082 | 3300031941 | Soil | LHLLLKGPESLIDIVVSNEYLQNVSNLLLALDAPSSC |
Ga0310912_108313981 | 3300031941 | Soil | LTKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPMAVALNAL |
Ga0310916_117187521 | 3300031942 | Soil | NALALHLLFEDPESLIDIVVANDDLQNVSNLLLAPDAPSSY |
Ga0306922_114222651 | 3300032001 | Soil | GLALGRFFIRLAALHLAKNALALHLLLKGPESLIDIVVSNEYLQNVSNLLLAPEAPSSR |
Ga0318507_105011031 | 3300032025 | Soil | LHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0318549_101640814 | 3300032041 | Soil | KNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318556_100668864 | 3300032043 | Soil | RLAALHLTKNALALHLLLENPERLIDIVVANDDLQNVSNLLLAPDAPSSC |
Ga0318532_101998731 | 3300032051 | Soil | TKNALALHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPMAVALNAL |
Ga0318504_101537592 | 3300032063 | Soil | LHLLLEGPESLIDIVVANEYLQNVSNLLPAPDAPSSC |
Ga0318513_102926913 | 3300032065 | Soil | ALHLLLENPERLIDIVVANDDLQNISNLLLAPDAPSSC |
Ga0306920_1009934251 | 3300032261 | Soil | FIRPAAFHLTKNALALHLLFEDPESLIDIVVANDDLQNVSNLLLAPDAPSSY |
Ga0306920_1035912451 | 3300032261 | Soil | LAALHLAKNALALHLLFEHPESLIDIVVSNEYLQNVSNLLLLALDAPSSC |
Ga0310914_108612661 | 3300033289 | Soil | RFFIRPAAFHLTKNALALHLLFEDPESLIDIVVANDDLQNVSNLLLAPDAPSSY |
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