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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F088150 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 109 |
| Average Sequence Length | 54 residues |
| Representative Sequence | RLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA |
| Number of Associated Samples | 98 |
| Number of Associated Scaffolds | 109 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 2.75 % |
| % of genes near scaffold ends (potentially truncated) | 97.25 % |
| % of genes from short scaffolds (< 2000 bps) | 98.17 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.36 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (58.716 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.596 % of family members) |
| Environment Ontology (ENVO) | Unclassified (35.780 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (38.532 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 109 Family Scaffolds |
|---|---|---|
| PF13358 | DDE_3 | 79.82 |
| PF02410 | RsfS | 0.92 |
| PF08386 | Abhydrolase_4 | 0.92 |
| PF13360 | PQQ_2 | 0.92 |
| PF07676 | PD40 | 0.92 |
| PF09948 | DUF2182 | 0.92 |
| PF13492 | GAF_3 | 0.92 |
| PF04542 | Sigma70_r2 | 0.92 |
| COG ID | Name | Functional Category | % Frequency in 109 Family Scaffolds |
|---|---|---|---|
| COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.92 |
| COG0799 | Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits | Translation, ribosomal structure and biogenesis [J] | 0.92 |
| COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Transcription [K] | 0.92 |
| COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 0.92 |
| COG4941 | Predicted RNA polymerase sigma factor, contains C-terminal TPR domain | Transcription [K] | 0.92 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 58.72 % |
| Unclassified | root | N/A | 41.28 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 15.60% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 10.09% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 7.34% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.50% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.59% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.59% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 3.67% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.67% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.67% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 3.67% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.75% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.75% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.83% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.83% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.83% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.92% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.92% |
| Groundwater | Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater | 0.92% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 0.92% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.92% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.92% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.92% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.92% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.92% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.92% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.92% |
| Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.92% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.92% |
| Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 0.92% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.92% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.92% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.92% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.92% |
| Tropical Rainforest Soil | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil | 0.92% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
| 3300005363 | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300005836 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB | Environmental | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009610 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 | Environmental | Open in IMG/M |
| 3300010039 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300011417 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2 | Environmental | Open in IMG/M |
| 3300011429 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2 | Environmental | Open in IMG/M |
| 3300011435 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2 | Environmental | Open in IMG/M |
| 3300011444 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2 | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012684 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06) | Environmental | Open in IMG/M |
| 3300012901 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1 | Environmental | Open in IMG/M |
| 3300012916 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2 | Environmental | Open in IMG/M |
| 3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300014154 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015 | Environmental | Open in IMG/M |
| 3300014299 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1 | Environmental | Open in IMG/M |
| 3300014861 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D | Environmental | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300017947 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG | Environmental | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300017965 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T | Environmental | Open in IMG/M |
| 3300018027 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex | Environmental | Open in IMG/M |
| 3300018064 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex | Environmental | Open in IMG/M |
| 3300018089 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018422 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300020034 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2 | Environmental | Open in IMG/M |
| 3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
| 3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022534 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1 | Environmental | Open in IMG/M |
| 3300022694 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026217 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes) | Environmental | Open in IMG/M |
| 3300026547 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes) | Environmental | Open in IMG/M |
| 3300026995 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes) | Environmental | Open in IMG/M |
| 3300027068 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes) | Environmental | Open in IMG/M |
| 3300027533 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) | Environmental | Open in IMG/M |
| 3300027635 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027835 | Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes) | Environmental | Open in IMG/M |
| 3300027875 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300028807 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300028819 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 | Environmental | Open in IMG/M |
| 3300028884 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195 | Environmental | Open in IMG/M |
| 3300030496 | Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2) | Environmental | Open in IMG/M |
| 3300031226 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S | Environmental | Open in IMG/M |
| 3300031366 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S | Environmental | Open in IMG/M |
| 3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
| 3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
| 3300031859 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 | Environmental | Open in IMG/M |
| 3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
| 3300031959 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 | Environmental | Open in IMG/M |
| 3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
| 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Host-Associated | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032275 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0062589_1011457412 | 3300004156 | Soil | LAAAITAQPDATLRELREALKTSAGLATIWRAVNQLDLTIKKNRSRR* |
| Ga0063356_1027843291 | 3300004463 | Arabidopsis Thaliana Rhizosphere | RLRALVTAQPDATLAELRDALRTSAALATIWRELNQLDLTLKKNRTRRRTATR* |
| Ga0070687_1005945192 | 3300005343 | Switchgrass Rhizosphere | RLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0008090_142664321 | 3300005363 | Tropical Rainforest Soil | HLAALVAARPDATLAELREALRTSAGLATVWRELDRLELTVKKNDSRRRTTAPRRRG* |
| Ga0070659_1016600441 | 3300005366 | Corn Rhizosphere | ALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0070700_1005807783 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | AARPDATLAELREALRTSAGLATVWRELDRLELTVKKNDSRRRTTPPRRRR* |
| Ga0070663_1004895163 | 3300005455 | Corn Rhizosphere | IAPHQQTKFRRRVLEGQEDRLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0070707_1009771371 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | RVLDGQDDRLAGLMAAQPDATLAELRDALRTSAGLATIWRAINQLDFTVKKNRTRRRTTTA* |
| Ga0070698_1020607071 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | ALVTAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR* |
| Ga0070697_1010870111 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | NDRLAAAITAQPDATLRELREALKTSAGLATIWRAVNQLDLTVKKNRSRRRTATG* |
| Ga0070697_1014336302 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LVTAQPDATLAELRDRLRTSVAVATIWRELNQLDLTVKKNRSRRRTTAR* |
| Ga0070664_1013057051 | 3300005564 | Corn Rhizosphere | LAELREGLRTTAALATIWRELNQLDLTVKKNRPRRRTTAA* |
| Ga0068852_1011374741 | 3300005616 | Corn Rhizosphere | KFRRRVLEGQEDRLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0068866_111485281 | 3300005718 | Miscanthus Rhizosphere | TKFRGRVLDGQEDRLTAAITAQPDATLQELRDALRTSAGITTIWRAVNQLDLTIKKNRSRRRTTTA* |
| Ga0074470_1093378616 | 3300005836 | Sediment (Intertidal) | LVIAQPDASLAEVRDRLRTSAALATIWRQLNQLDLTVKQDGTRGRTATY* |
| Ga0068862_1021687361 | 3300005844 | Switchgrass Rhizosphere | DVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0075015_1004563422 | 3300006102 | Watersheds | EDRLRGLVTAQPDATLAELRQALQTPAGLATIWRELKLLDLTVKKNSTRRRTAAP* |
| Ga0099828_108359672 | 3300009089 | Vadose Zone Soil | ALVAARPDATLAELRDALQTSAGLATVWRALNQLDLTVKKNRPRRRTTAS* |
| Ga0099828_120478161 | 3300009089 | Vadose Zone Soil | RLRALVTAQPDATLAELRDRLRASVALATIWRELNQLDLTVKKNRTRRRTTAR* |
| Ga0111539_113369691 | 3300009094 | Populus Rhizosphere | LRDALQTSDGLATIWRELRQLDFTVKKNRTRRRTTSA* |
| Ga0075418_112698342 | 3300009100 | Populus Rhizosphere | RALVTAQPDQTLRELREALRSSASLSSIWRALDRLELTLKKNRTRR* |
| Ga0111538_132679591 | 3300009156 | Populus Rhizosphere | ALVTAQPDQTLRELREALRSSASLSSIWRALDRLELTLKKNRTRR* |
| Ga0105340_15762022 | 3300009610 | Soil | VLAGQETRLASLVAARPDATLAELREALQASAGVATVWRELDRLQLTVKKNDSRRRTAPPRRRR* |
| Ga0126309_112733701 | 3300010039 | Serpentine Soil | QPDATLAELREALRTSAGLATIWRALNQLDLTVKKNRTRRRTTTR* |
| Ga0126380_116171532 | 3300010043 | Tropical Forest Soil | LLAAQPDATLNELRDGLATSAGLATVWRAVNRVDFTRKKNRPRRRAAAR |
| Ga0126377_132708251 | 3300010362 | Tropical Forest Soil | TKFRRRVLDGQEDRLKALMAARPDATLAELRAALPTSAGLATLWRTIQQLDFTVKKNRTRRRTTPR* |
| Ga0126377_132848641 | 3300010362 | Tropical Forest Soil | DRLRGLVAARPDATLVELRDALGTTAALATIWRELNQLDLTVKENRTRRRTAAP* |
| Ga0126379_129315122 | 3300010366 | Tropical Forest Soil | VAARPDATLAELREALHTSAGLATVWRELDRLELTVKKNDSRRRTTAPRRRR* |
| Ga0137326_10601332 | 3300011417 | Soil | ALVNAQPDATLAELREALRTSAALATIWRELNQLDLTVKKNRTRRRTAAR* |
| Ga0137455_12407472 | 3300011429 | Soil | LAGLIAARPDATLAELRDALPTKAALSTIWREIDRLDLTVKKNGPRR* |
| Ga0137426_10940922 | 3300011435 | Soil | LEGQDERLRALITAQPDATLAELRDALPTSAALATIWRTINQLDLTIKKNRPRR* |
| Ga0137426_12686652 | 3300011435 | Soil | RGRVLAGQEERLKALVAARPDATLTELRDGLRTSAGLATIWRELKQLDLTVKKNGARRRATAP* |
| Ga0137463_11046061 | 3300011444 | Soil | LVTAQPDSTLAELRDGLRTSAALATIWRELNQLDLTLKKNRTRRRTTPR* |
| Ga0137388_110023632 | 3300012189 | Vadose Zone Soil | LEGQEDRLRALVTAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRARRRTTAR* |
| Ga0137377_111639081 | 3300012211 | Vadose Zone Soil | TLAELRDRLRTSVALATIWRELNQLDLTVKKNGTRRRTTAPRRRR* |
| Ga0137360_109293871 | 3300012361 | Vadose Zone Soil | ELRDALRTAAAVSTVWRELNQLDLTVKKNGTRRRTTATRRRR* |
| Ga0137390_104999691 | 3300012363 | Vadose Zone Soil | EQRLAGLIAARPDATLAELRDALPTTAALSTIWREIGRLDLTVKKNRPRR* |
| Ga0137390_117976661 | 3300012363 | Vadose Zone Soil | RDALRTSAALATIWRELNQLDLTLKKNRTRRRAATP* |
| Ga0137373_112897882 | 3300012532 | Vadose Zone Soil | TLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTTR* |
| Ga0136614_110188611 | 3300012684 | Polar Desert Sand | GQEERLRALVTAQPDRTLAELRDALPTSAGLTTIWRALGRLQLTVKKNGTRRRTTAP* |
| Ga0157288_103986372 | 3300012901 | Soil | RLAALVAARPDATLAELRDGLQTAAGLATIWRELDRLQLTVKKNDSRRRTTPPRRRR* |
| Ga0157310_101185212 | 3300012916 | Soil | RLAALVAARPDATLAELREALRTAAGLATVWRELDRLELTVKKNDSRRRTTPPRRRR* |
| Ga0137396_109530431 | 3300012918 | Vadose Zone Soil | AAHKQTKFRRRVLEGQADRLKALVTAQPDATLAELRDALRTSAALATIWRELNQLDLTLKKNRTRRRTTTR* |
| Ga0164306_116576471 | 3300012988 | Soil | TAEPDATLAELRDKPQTSAGLATTWRELNHLDLTVKKNRTRRRTTPARHRG* |
| Ga0134075_102185231 | 3300014154 | Grasslands Soil | LVTAQPAATLAELRDALRTSAALATIWRELNQLDLTVKKNRTRRRTTAG* |
| Ga0075303_10274153 | 3300014299 | Natural And Restored Wetlands | ELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA* |
| Ga0180061_10736871 | 3300014861 | Soil | AQPDATLAELRAALQTSAGLATIWRELGQLKLTIKKNGARRRTTTR* |
| Ga0132256_1022382761 | 3300015372 | Arabidopsis Rhizosphere | IAPRQQTKFRSRVLAGQEQRLGGLIAARPDATLAELRDALSTTAALSTIWREIGRLDLTVKKNRPRR* |
| Ga0132256_1023288662 | 3300015372 | Arabidopsis Rhizosphere | RNRETQSIAPLKQTKFRHRVLQGQEERLKALVAAKPDATLTELRDGLATSAALATIWRELNQLGFTIKKNGTRRRTASR* |
| Ga0182034_119418261 | 3300016371 | Soil | DRLQALVLAQPDATLAELKEGLGTTAALATIWRELNQLDLTIKKNRSRRRATPR |
| Ga0187785_102373582 | 3300017947 | Tropical Peatland | SIEALKQTKFRGRVLAGHEAQLAALVAARPDATLAELRDALRTSAALATVWRELDRLELTVKKNDSRRRTTPTRRRR |
| Ga0187778_105216041 | 3300017961 | Tropical Peatland | LAALVAARPDATLVELREALHTSAGLATIWRELDRLRLTVNKNRTRRRTTPA |
| Ga0190266_100128131 | 3300017965 | Soil | LAGQETRLASLVAARPDATLAELREALQTSAGVATVWRELDRLQLTVKKNDSRRRTAPPRRRR |
| Ga0184605_102006643 | 3300018027 | Groundwater Sediment | LVTAQPDATLAELRDALRTAAAVSTVWRELNHLDLTVKKNRTRRRTTAA |
| Ga0187773_103668201 | 3300018064 | Tropical Peatland | EAHLAALVAARPDATLAELREALRTSACVATVWRELDRLQLTVKKNDSRRRTTPTRRRG |
| Ga0184612_103098381 | 3300018078 | Groundwater Sediment | TAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0187774_104651771 | 3300018089 | Tropical Peatland | LAALVAARPDATLAELREALRTSACVATVWRELDRLQLTVKKNDSRRRTTPTRRRG |
| Ga0190265_124466162 | 3300018422 | Soil | RLRGLVTAQPDATLVELREALRTSAALATIWRELNQLDLTIKKNRTRGRTTAG |
| Ga0190272_114925551 | 3300018429 | Soil | TEQLKALVTAQPDATLAELRDALRTSAALATIWRELNQLDFTLKKNGTRRRTATP |
| Ga0066667_117748162 | 3300018433 | Grasslands Soil | AELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0066662_108099063 | 3300018468 | Grasslands Soil | EGQEDRLRALVTAQPDATLAELRDALRTSAALATIWRELNQLDLTVKKNRTRRRTTAG |
| Ga0066662_117772431 | 3300018468 | Grasslands Soil | ETGSIAAHKQTKVRRRVLEGQADRLKALVTAQPDATLAELRDALRTSAALATIWRELNQLDLTLKKTSRRGRRRTTYWTRNAMGR |
| Ga0193753_102789631 | 3300020034 | Soil | PRTLAEQEERLRALVTAQPDRTLAELRDALPTSASLATIWRALGRLQLTVKKNRTRGRTTAS |
| Ga0210381_101508701 | 3300021078 | Groundwater Sediment | FRPRTLADKDDRLVALVTAQPDRTLAELRDALPTSASLATIWRALGRLKLTVKKNRTRRRTAPS |
| Ga0179596_103280992 | 3300021086 | Vadose Zone Soil | AHLGALVAARPDATLAELREALRTSAGLATIWRELDRLQLTVKKNDSRRRTTPPGRRR |
| Ga0210383_115434871 | 3300021407 | Soil | IAPRPQTKFRRRVLEGQEDRLRALVTAQPDATLAELRDRLRTSAALATIWRELNQLDLTVKKNRARGRTAAR |
| Ga0126371_127429882 | 3300021560 | Tropical Forest Soil | VTAQPDATLAELRERLSTRAALATIWRELNQLDLTVKKNRSRRRTTPR |
| Ga0224452_11675572 | 3300022534 | Groundwater Sediment | DRLRALVTAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0222623_101868272 | 3300022694 | Groundwater Sediment | RQQTKFRPRTLADKDDRLVALVTAQPDRTLAELRDALPTSASLATIWRALGRLKLTVKKNRTRRRTAPS |
| Ga0222622_105103662 | 3300022756 | Groundwater Sediment | TLAEQEDRLRALVTAQPDRTLAELRDALPTSASLATIWRALERLQLTVKKNRTRGRTASS |
| Ga0222622_111397162 | 3300022756 | Groundwater Sediment | TLAELREALRTAPGLATVWRELERLQLTVKKNDSRRRATPPRRRR |
| Ga0207688_107499751 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | KFRGRVLAGHETQLAALVAARPDATLAELRDALRTSAALATVWRELDRLQLTVKKNDSRRRTTNGHPAPNARC |
| Ga0207662_101480441 | 3300025918 | Switchgrass Rhizosphere | QEDRLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA |
| Ga0207646_108864972 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | AQPDATLAELRDALRTSAVLATIWRAINQLDFTVKKNRTRRRTTTA |
| Ga0207690_104578781 | 3300025932 | Corn Rhizosphere | ALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA |
| Ga0207686_112281071 | 3300025934 | Miscanthus Rhizosphere | QTKFRRRVLEGQEDRLRALVTAQPDVTLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRRRTTAA |
| Ga0207689_114136741 | 3300025942 | Miscanthus Rhizosphere | QPDQTLAELRRALPTAASLSSIWRTLDRLKLTLKKNRTRR |
| Ga0207668_109009841 | 3300025972 | Switchgrass Rhizosphere | LAGQEDRLAALVAARLDATLAELREALRTSAGLATVWRELDRLELTVKKNDSRRRTTPPRRRR |
| Ga0209871_10272661 | 3300026217 | Permafrost Soil | EGQEDRLKALVTAQPDATLAELRDALRTSAALATIWRELNQLDLTLKKNGTRR |
| Ga0209156_102615022 | 3300026547 | Soil | RRVLAGQEDRLRALVTAQPDATLVELRDALRTSAALATIWRELNQLDLTVKKNRTRRRTTTP |
| Ga0208761_10305402 | 3300026995 | Soil | EDRLRAFVTAQPDVTLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTAST |
| Ga0209898_10333392 | 3300027068 | Groundwater Sand | RALITAQPDATLAELRAALPTSAALATIWRAINELDLTIKKNRTRRRATPA |
| Ga0208185_11676912 | 3300027533 | Soil | VLAGQETRLASLVAARPDATLAELREALQASAGVATVWRELDRLQLTVKKNDSRRRTAPPRRRR |
| Ga0209625_10829711 | 3300027635 | Forest Soil | VTAQPDATLAELRDRLRTSAALATIWRELNQLDLTVKKNRARGRTAAR |
| Ga0209515_104886842 | 3300027835 | Groundwater | GQADRLKALVGAQPDATLAEWRDALATSVGLATIWRALNQLDLTIKKNRSRRRTTAR |
| Ga0209283_105149322 | 3300027875 | Vadose Zone Soil | LRALVMAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRARRRTTAR |
| Ga0268265_107156483 | 3300028380 | Switchgrass Rhizosphere | ELRERLRASVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0268265_107166803 | 3300028380 | Switchgrass Rhizosphere | RSLVTAQPDATLVELRDRLRTSVALATIWRELNQLDLTVKKNSARRRTTAG |
| Ga0268264_116276012 | 3300028381 | Switchgrass Rhizosphere | RALVTAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKTSARRRTTAG |
| Ga0307282_103069421 | 3300028784 | Soil | QEDRLAAAITAQPDATLRELREALKTSAGLATIWREVNQLDLTVKKNRSRRRTTTD |
| Ga0307305_103248312 | 3300028807 | Soil | FRRRVLEGQEDRLRALVTAQPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0307305_105140682 | 3300028807 | Soil | ELRDRLRASVALATIWRELNQLDLTVKKNRTRRRTTTR |
| Ga0307302_106979932 | 3300028814 | Soil | VLDGQETRLAALVAARPDATLTELRHALATSAGLSTIWRALDRLQLTVKKNRPRGRATTT |
| Ga0307296_103809731 | 3300028819 | Soil | ELRDRLRASVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0307308_103712841 | 3300028884 | Soil | DDRLKALVLAQPDATLAELRHGLQTSAGLSTIWRAVNQLDFTVKKNAARRRTTTS |
| Ga0307308_106094631 | 3300028884 | Soil | QPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0268240_100376433 | 3300030496 | Soil | EPLKQTKFRSRVLDGHDKQLAAAITAQPDATLRELRDTLKTSAGLATIWRAINQLNLTVKKNRSRRRTTTK |
| Ga0307497_103826772 | 3300031226 | Soil | RGRVLEGQDDRLAAAITAQPDATLRELREALKTPAGLATIWRAVNQLNLTVKKNRSRRRTTTD |
| Ga0307506_103513211 | 3300031366 | Soil | ARTLRPDEEERLGALVTAQPDRTLAELRDALPTSASLATIWRALGRLHFTVKKNGTRRRTTPA |
| Ga0318500_103791131 | 3300031724 | Soil | LRDGLGTTAALATIWRELNQLDLTVKKNRARRRTTSA |
| Ga0318565_104342151 | 3300031799 | Soil | RALVTAQPDATLAELRDRLRTSAALATIWRELNQLDLTVKKNTPRRRTTAARRRR |
| Ga0318527_101759132 | 3300031859 | Soil | PDATLAELRDRLRTSAALATIWRELNQLDLTVKKNTPRRRTTAARRRR |
| Ga0310885_109211411 | 3300031943 | Soil | LRALVTARPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0318530_102574591 | 3300031959 | Soil | DRLRTSAALATIWRELNQLDLTVKKNTPRRRTTAARRRR |
| Ga0326597_112588442 | 3300031965 | Soil | PQTKFRRRVLEGQEDRLRALVTAQPDATLAELRDRLRTSAALATIWRELNQLDLTVKKNRTRGRTTAH |
| Ga0307409_1010224853 | 3300031995 | Rhizosphere | VLEGQEDRLRALVTARPDATLAELRDRLRTSVALATIWRELNQLDLTVKKNRTRRRTTAR |
| Ga0307472_1009511151 | 3300032205 | Hardwood Forest Soil | RAFVTAQPDVTLAELRDRLRTSVALATIWRELNQLDLTVKKNRPRRRTTAR |
| Ga0315270_109654702 | 3300032275 | Sediment | DRLAAAITAQPDATLQELRETLKTSAGLATIWRAVNQLDLTVKKNGSRRRTATA |
| Ga0335076_109384961 | 3300032955 | Soil | ALVAASPDATLEELRDALRTTAGVSTIWRALRQLEFTVKKNGLRRRTTAARRRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |