Metagenome / Metatranscriptome Family F088115

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088115
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	70 residues
Representative Sequence	MSDRAPAMDDATMKFGLLMESAQAHQKLAETHLERLRAHTQDLDGVVRDEIRRTLIEELQMLTAES
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.91 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.881 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (16.514 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.96% β-sheet: 0.00% Coil/Unstructured: 34.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF10412	TrwB_AAD_bind	79.82
PF00437	T2SSE	11.01
PF07996	T4SS	0.92
PF03524	CagX	0.92
PF04335	VirB8	0.92
PF01627	Hpt	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3504	Type IV secretory pathway, VirB9 components	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG3736	Type IV secretory pathway, component VirB8	Intracellular trafficking, secretion, and vesicular transport [U]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.88 %
Unclassified	root	N/A	43.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.05 %
Unclassified	root	N/A	43.12 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	50.46 %
Unclassified	root	N/A	43.12 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	10.09 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.50 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.09 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	5.50 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.92 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.92 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.09 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	4.59 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.92 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.92 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.92 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.09 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4.59 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.92 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.92 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.92 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.12 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.09 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4.59 %
Variovorax sp. URHB0020	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	0.92 %
Sphingomonas sp. PAMC 26605	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. PAMC 26605	0.92 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.92 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003861\|Ga0031654_10117325	Not Available	748	Open in IMG/M
3300004091\|Ga0062387_100066190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1807	Open in IMG/M
3300004092\|Ga0062389_101834654	Not Available	785	Open in IMG/M
3300004092\|Ga0062389_102124471	Not Available	736	Open in IMG/M
3300004635\|Ga0062388_100606963	All Organisms → cellular organisms → Bacteria → Proteobacteria	1004	Open in IMG/M
3300005591\|Ga0070761_10476829	Not Available	767	Open in IMG/M
3300005591\|Ga0070761_10599367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	685	Open in IMG/M
3300005602\|Ga0070762_10793947	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300005712\|Ga0070764_10707962	Not Available	621	Open in IMG/M
3300006059\|Ga0075017_101195127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	595	Open in IMG/M
3300009500\|Ga0116229_10023449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	7497	Open in IMG/M
3300009522\|Ga0116218_1273076	Not Available	758	Open in IMG/M
3300009709\|Ga0116227_11069416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	607	Open in IMG/M
3300009709\|Ga0116227_11103332	Not Available	597	Open in IMG/M
3300009709\|Ga0116227_11214505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	566	Open in IMG/M
3300010339\|Ga0074046_10188590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1301	Open in IMG/M
3300010341\|Ga0074045_10590250	Not Available	709	Open in IMG/M
3300011270\|Ga0137391_10665554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	868	Open in IMG/M
3300012202\|Ga0137363_11234355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	635	Open in IMG/M
3300012361\|Ga0137360_10721782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	856	Open in IMG/M
3300012361\|Ga0137360_11449555	Not Available	590	Open in IMG/M
3300012362\|Ga0137361_11668681	Not Available	557	Open in IMG/M
3300012683\|Ga0137398_10197647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1325	Open in IMG/M
3300012925\|Ga0137419_10743644	Not Available	798	Open in IMG/M
3300012927\|Ga0137416_11143243	Not Available	700	Open in IMG/M
3300012929\|Ga0137404_10197625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1702	Open in IMG/M
3300014164\|Ga0181532_10713391	Not Available	540	Open in IMG/M
3300014168\|Ga0181534_10950871	Not Available	516	Open in IMG/M
3300014169\|Ga0181531_10080385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. PAMC 26605	1930	Open in IMG/M
3300014201\|Ga0181537_10610019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	744	Open in IMG/M
3300014201\|Ga0181537_10708129	Not Available	684	Open in IMG/M
3300014491\|Ga0182014_10295987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	832	Open in IMG/M
3300014501\|Ga0182024_10672992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1282	Open in IMG/M
3300014501\|Ga0182024_12867355	Not Available	511	Open in IMG/M
3300014657\|Ga0181522_10527591	Not Available	713	Open in IMG/M
3300014838\|Ga0182030_10975754	Not Available	749	Open in IMG/M
3300015241\|Ga0137418_11128648	Not Available	556	Open in IMG/M
3300017943\|Ga0187819_10083629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1905	Open in IMG/M
3300017955\|Ga0187817_10465735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	806	Open in IMG/M
3300017972\|Ga0187781_11284159	Not Available	540	Open in IMG/M
3300018038\|Ga0187855_10190210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1214	Open in IMG/M
3300018057\|Ga0187858_10659071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	627	Open in IMG/M
3300019787\|Ga0182031_1058549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1058	Open in IMG/M
3300020060\|Ga0193717_1093882	Not Available	959	Open in IMG/M
3300020581\|Ga0210399_10733914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	810	Open in IMG/M
3300020583\|Ga0210401_10914334	Not Available	736	Open in IMG/M
3300021088\|Ga0210404_10524952	Not Available	670	Open in IMG/M
3300021170\|Ga0210400_10318603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1278	Open in IMG/M
3300021402\|Ga0210385_11168571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	591	Open in IMG/M
3300021403\|Ga0210397_10686625	Not Available	786	Open in IMG/M
3300021405\|Ga0210387_10833616	Not Available	814	Open in IMG/M
3300021405\|Ga0210387_11125804	Not Available	684	Open in IMG/M
3300021406\|Ga0210386_11775860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	508	Open in IMG/M
3300021433\|Ga0210391_10009982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	7708	Open in IMG/M
3300021474\|Ga0210390_10610230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	914	Open in IMG/M
3300021474\|Ga0210390_11523317	Not Available	529	Open in IMG/M
3300021475\|Ga0210392_11341893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	535	Open in IMG/M
3300021475\|Ga0210392_11457858	Not Available	512	Open in IMG/M
3300021477\|Ga0210398_10299313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1312	Open in IMG/M
3300021478\|Ga0210402_10855982	Not Available	835	Open in IMG/M
3300023101\|Ga0224557_1278577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	540	Open in IMG/M
3300024222\|Ga0247691_1032391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	799	Open in IMG/M
3300027117\|Ga0209732_1039375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	817	Open in IMG/M
3300027528\|Ga0208985_1092234	Not Available	582	Open in IMG/M
3300027783\|Ga0209448_10262204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	569	Open in IMG/M
3300027862\|Ga0209701_10405299	Not Available	759	Open in IMG/M
3300027879\|Ga0209169_10720512	Not Available	516	Open in IMG/M
3300027895\|Ga0209624_10812715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	613	Open in IMG/M
3300027908\|Ga0209006_10409402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1141	Open in IMG/M
3300027908\|Ga0209006_10482233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1036	Open in IMG/M
3300027908\|Ga0209006_10547394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	961	Open in IMG/M
3300028536\|Ga0137415_10422438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1138	Open in IMG/M
3300028806\|Ga0302221_10369635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	625	Open in IMG/M
3300028882\|Ga0302154_10199882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1017	Open in IMG/M
3300029911\|Ga0311361_11375748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	545	Open in IMG/M
3300029915\|Ga0311358_10731337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	721	Open in IMG/M
3300029943\|Ga0311340_11544057	Not Available	518	Open in IMG/M
3300029953\|Ga0311343_10832687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	748	Open in IMG/M
3300030007\|Ga0311338_11454881	Not Available	635	Open in IMG/M
3300030013\|Ga0302178_10499795	Not Available	530	Open in IMG/M
3300030399\|Ga0311353_11024250	Not Available	690	Open in IMG/M
3300030494\|Ga0310037_10431237	Not Available	542	Open in IMG/M
3300030503\|Ga0311370_10321886	All Organisms → cellular organisms → Bacteria → Proteobacteria	1988	Open in IMG/M
3300030503\|Ga0311370_10589262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1336	Open in IMG/M
3300030509\|Ga0302183_10323697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	595	Open in IMG/M
3300030520\|Ga0311372_10716441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1392	Open in IMG/M
3300030524\|Ga0311357_10129514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2508	Open in IMG/M
3300030524\|Ga0311357_10175219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2109	Open in IMG/M
3300030617\|Ga0311356_11364848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	646	Open in IMG/M
3300030617\|Ga0311356_11943953	Not Available	521	Open in IMG/M
3300030677\|Ga0302317_10450911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	563	Open in IMG/M
3300030862\|Ga0265753_1077992	Not Available	637	Open in IMG/M
3300031236\|Ga0302324_100253701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2742	Open in IMG/M
3300031236\|Ga0302324_102107176	Not Available	703	Open in IMG/M
3300031521\|Ga0311364_12041252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	562	Open in IMG/M
3300031524\|Ga0302320_12177082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	513	Open in IMG/M
3300031708\|Ga0310686_105702771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2078	Open in IMG/M
3300031708\|Ga0310686_112604361	Not Available	677	Open in IMG/M
3300031708\|Ga0310686_119348285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	592	Open in IMG/M
3300031718\|Ga0307474_10127225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1915	Open in IMG/M
3300031788\|Ga0302319_11528690	Not Available	592	Open in IMG/M
3300031823\|Ga0307478_10354812	Not Available	1209	Open in IMG/M
3300031823\|Ga0307478_10947167	Not Available	720	Open in IMG/M
3300032160\|Ga0311301_10751981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1354	Open in IMG/M
3300032180\|Ga0307471_102851845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	614	Open in IMG/M
3300034163\|Ga0370515_0131521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1076	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.82%
Aquatic	Environmental → Aquatic	16.51%
Plants	Host-Associated → Plants	3.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.96%
Peat	Environmental → Terrestrial → Peat	23.85%
Freshwater	Environmental → Aquatic → Freshwater	15.60%
Peat Moss	Host-Associated → Plants → Peat Moss	3.67%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.68%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.26%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	16.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.01%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.75%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.75%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031654_101173251	3300003861	Freshwater Lake Sediment	VSDGARATGEETLKLGLLMESAHAHQKMAETQLERLRTHTQGLDDIVSGAIRRTLIEELQSL
Ga0062387_1000661902	3300004091	Bog Forest Soil	MTDRTTAADDVTMKFGLLMESAQAHQRLAETQLDKLRAHTQDLDGVVRDEIRRTLVEELQMLTAETSRAA
Ga0062389_1018346542	3300004092	Bog Forest Soil	MDDTTLKFGLLMESAQAHQKMAESQLEQLRTHTQDLDGVVRDEIRRTLIAELQEVTSE
Ga0062389_1021244712	3300004092	Bog Forest Soil	MTERSTTFDDATVKVGMLMESAQAHQRLAEGQLERLKAHTRDLDGVVRDEIRRTLVEELQVLTQETARATHALQKIRRG
Ga0062388_1006069631	3300004635	Bog Forest Soil	MSERAGAVDETTMKFGLLMESAQAHQKMAENHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAAQA
Ga0070761_104768291	3300005591	Soil	MSERPGTVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAAQALKG
Ga0070761_105993672	3300005591	Soil	MNDRAPALDDATLKFGLLMESAQAHQKLAETHLERLRTHTQDLDGVVREEIRRTLIEELQELTA
Ga0070762_107939471	3300005602	Soil	MNDRAAVDDATMKVGLLMESAQVHQKLAEGQLERLRAHTQDLDVVVRDEIRRTLVEELQMLTAETTRAARAL
Ga0070764_107079622	3300005712	Soil	MSERAGTVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAA
Ga0075017_1011951272	3300006059	Watersheds	MNDAGHLVDPDTMKFGLLMESAQVHQKLAETHLERLRAHTEDLDGVVREEIRRTLVDELK
Ga0116229_100234499	3300009500	Host-Associated	MTHGDGAALSDEAMKFGLLMESAQAHQKLAQSHLEKLQSHTQGLDGVVRDEIRRTLIAELKSLTAETDRAAGALRDL
Ga0116218_12730761	3300009522	Peatlands Soil	MTERALGVDEPTMKFGLLMESAQTHQRLAEAHLEKLRAHTQDLDGVVREEIRRTLIEEFQEL
Ga0116227_110694161	3300009709	Host-Associated	VNDQVSTIDDKTMAFGLLMESAQAHQKLAESQLQKLRDHTRDLDGVVRDEIRRTMVDELQ
Ga0116227_111033321	3300009709	Host-Associated	MNERTETVDDDTMKFGLLMESAQAHQKLAEVHLQQLRTHTQDLDSVVRDEIRRTLAEELQALTVESARAAQALKEMQRA
Ga0116227_112145052	3300009709	Host-Associated	VNDAASSISDKTMAFGLLMESAQAHQKLAEAQLQKLRDHTRDLDGVVRDEIRRTLVDELQMLTVE
Ga0074046_101885901	3300010339	Bog Forest Soil	MSERAPSIDDAAMKFGLLMESAQAHQNLAETHLEKLRAHTQDLDGVVREEIRRTLIEELEELTVESRRAAQALKGMQRAANMRGLLW
Ga0074045_105902502	3300010341	Bog Forest Soil	VSDGARAVDETTMKVGLLMESAQAHQKMAETHLERLRAHTQDLDEIVREEIRRTLIEELQSLTA
Ga0137391_106655541	3300011270	Vadose Zone Soil	MTDRVHTIDDTTMSVGLLMESVQAHQKLAESQLEQLRAHTRDLDAVVRDEIRRTLIEELQMLWGESKRASEALQRTGRSATLRV
Ga0137363_112343551	3300012202	Vadose Zone Soil	MTDRVRAIDDTTMNFGLLMESAQAHQKLAESQLEQLHAYTRDLDAVVRDEIRRTLVEELQML
Ga0137360_107217821	3300012361	Vadose Zone Soil	VSEREHPVGDDTLKFGLLMESAQAHQKLAETHLTKLLAHTQGLDDVVRDEIRRTLIEEFQALSAESDRAA
Ga0137360_114495551	3300012361	Vadose Zone Soil	MSEHDDTMKFGLLMEGAQTHQRLAETQLQKLRAHTQGLDAVVRDEIRRTLIEELQDLTTERDRAVRA
Ga0137361_116686812	3300012362	Vadose Zone Soil	VSERDHPVGDDTLKFGLLRESAQAHQKLAETHLTKLLAHTQGLDEVVRDEIRRTLVEEFQALG
Ga0137398_101976472	3300012683	Vadose Zone Soil	VSERDHPVGDDTLKFGLLMESAQAHQKLAETHLTKLLAHTQGLDDVVRDEIRRTLIEEFQAL
Ga0137419_107436441	3300012925	Vadose Zone Soil	MTDLARTIDDTTISVGLLMESVQAHQKLAESHLEQLQAHTRGLDAVVRDEIRRTLIEELQLLWAESKRAT
Ga0137416_111432431	3300012927	Vadose Zone Soil	MNDRVHTIDDTAMKLGLLMESVQAHQKLAESQLEQLHAQTRDLDAVVRDEIRRTLIEELQML
Ga0137404_101976251	3300012929	Vadose Zone Soil	MKFGLLMEGAQTHQRLAETQLQKLRAHTQGLDAVVRDEIRRTLIEELQDLTTER
Ga0181532_107133912	3300014164	Bog	MDEPSMKIGLLMESAQAHQKIAETHLERLRAHTQDLDEIVREEIRRTLIEELQSLTAESKRAVQALSTMKRAA
Ga0181534_109508711	3300014168	Bog	MAMGERAAAVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAERRRAAQSLKAMKRAAHL
Ga0181531_100803851	3300014169	Bog	MSEHAGSVDETTMKFGLLMESAQAHQKMAEIHLEKLRTHTQDLDGVVREEIRRTLVEELDDLTA
Ga0181537_106100191	3300014201	Bog	MNESGPRVDEETMKFGLLMESAQAHQRLAETHLEKLRAHTRDLDGVVRDEIRRTLVDELKSLTAESDCAARALRDMKRAANM
Ga0181537_107081292	3300014201	Bog	MSEHAGSVDETTMKFGLLMESAQAHQKMAEIHLEKLRTHTQDLDGVVREEIRRTLVEELDELTAESRRAAQ
Ga0182014_102959871	3300014491	Bog	MSERAQVVDDDTMKFGLLMESAQAHQKLAETHLEKLRAHTQDLDGLVREEIRRTLVDELK
Ga0182024_106729921	3300014501	Permafrost	MMDDATMKFGLLMESAQAHQRLAETHLEKLRAHTQDLDGVVRDEIRRTLTEELQMLTSESNRCAQALQRIRH
Ga0182024_128673552	3300014501	Permafrost	VNNAVATIDDKTMAFGLLMESAQAHQKLAESQLQKLRDHTRDLDGVVRDEIRRTLVDELQTLTSETARAIGALE
Ga0181522_105275912	3300014657	Bog	MTERVGTVDETTMKFGLLMESAQAHQKMAEIHLEKLRAHTQDLDGVVREEIRRTLVEEL
Ga0182030_109757542	3300014838	Bog	MSDRAEKMDDATLKFGLLMESAQAHQKLAETHLERLRAHTDDLDAVVRDEIRRTLVEELKMLTVESSRA
Ga0137418_111286482	3300015241	Vadose Zone Soil	VSERAAALDDATLKVGLLMESAQTHQKLAEGQLERLRAHTHDLDGVVRDEIRRTLVEELQALTAEATRATRALEKIRGS
Ga0187819_100836291	3300017943	Freshwater Sediment	MSERALDVDDATMKFGLLMESAQAHQKLAETQLEKLRSHTQDLDGVVREEIRRTLIEELQELTAETKRAAQALHGMKRAA
Ga0187817_104657352	3300017955	Freshwater Sediment	MSERALDVDDATMKFGLLMESAQAHQKLAETQLEKLRSHTQDLDGVVREEIRRTLIEEL
Ga0187781_112841591	3300017972	Tropical Peatland	MSLGLLMESAQAHQKLAETHLDRLRAHTQDLDGVVRDEIRRTLIEELQELTAESHRAAQSLRAMKRAAD
Ga0187855_101902102	3300018038	Peatland	MSERGPVVDDDTMKFGLLMESAQAHQKLAEMHLERLRAHTQDLDGVVREEIRRTLVDERKTLTAESDRAALALR
Ga0187887_108423402	3300018043	Peatland	MSERGPVVDDDTMKFGLLMESAQAHQKLAEMHLERLRAHTQDPDGVVREEIRRT
Ga0187858_106590711	3300018057	Peatland	MSEVAAPIDDATMKFGLLMESAQTHQKLAETHLERLRAHTEDLDDVVREEIRRTLAEEL
Ga0182031_10585492	3300019787	Bog	MSEVAAPIDDATMKFGLLMESAQTHQKLAETHLERLRAHTEDLDDVVREEIRRTLAEELAELTAESSRAA
Ga0193717_10938821	3300020060	Soil	MHGRKESWTQVMNERATTLDDATLKMGLLMESAEAHQKLAEGQLERLRAHTQDLDGVVRDEIRRTLVEELQALRAEVTRAARALQKLR
Ga0210399_107339141	3300020581	Soil	MSERAAALDDATLKVGLLMESAQAHQKLAEGQLERLRAHTQDLDGVVRDEIRRTLVEEL
Ga0210401_109143341	3300020583	Soil	MTDRTAAADDATMKFGLLMESAQAHQRLAESQLDKLRAHTQDLDSVVRDEIRRTLVEELQLLTAETTRAAHA
Ga0210404_105249522	3300021088	Soil	MDRKAAIPAAGAMRVPLVSERAQAMEDSSMKFGLLMESAQVHQKLAETQLEKLNAHVQDLDGVVRDEIRRTLVEELQMLSAESRRAALVLQG
Ga0210400_103186032	3300021170	Soil	MTDRVRAIDDTTMSVGLLMESAQAHQKLAESHLERLRAHTRDLDAVVRDEIRRTLIEELQLLWAESK
Ga0210385_111685712	3300021402	Soil	VNDSAAPIDDATMKFGLLMESAQAHQKMAETHLERLRAHTQDLDGVVREEIRRTLAEELAELTA
Ga0210397_106866252	3300021403	Soil	MNERASTLDDATLKMGLLMESAQAHQKLAEGQLERLRAHTQDLDGIVREEIRRTLVEELQALRAEMTRAARALQRLRSGNA
Ga0210387_108336161	3300021405	Soil	VSEQGHPVGDDTFKFGLLMESAQAHQKLAETHLTKLLAHTQGLDDVVRDEIRRTLIEEFQ
Ga0210387_111258041	3300021405	Soil	VSDRPAAMDETTMKFGLLMESAQAHQKLAETHLERLRAHTQDLDGVVREEIRRTLIEELREVTAESNRA
Ga0210386_117758601	3300021406	Soil	MSERAGGVDETTMKFGLLMESAQAHQRMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRR
Ga0210391_100099821	3300021433	Soil	MTDRTAAADDATMKFGLLMESAQAHQRLAESQLDKLRAHTQDLDSVVRDEIRRTLVEELQLLTAETTRAAHALHRVRRG
Ga0210390_106102301	3300021474	Soil	MDDATMKLGLLMESAQAHQKSAEVQLEKLRVHTDDLDGVVRGEIRRTLIEELQMLTAESARAAQ
Ga0210390_115233172	3300021474	Soil	MNDGTHALDDATMRFGLLMESAQAHQRSAEAQLEKLRTHTDDLDAVVRDEIRRTLVEELQMLTAESTRATQILRRAGR
Ga0210392_113418931	3300021475	Soil	MTERSAVLDDATMKVGLLMESAQAHQKLAEGQLERLRAHTQDLDSVVRDEIRRTLVEELRALTAETTRATRALEK
Ga0210392_114578582	3300021475	Soil	MSERAGTVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAAQALKGMKRAAH
Ga0210398_102993131	3300021477	Soil	MNDGTHALDDATMKFGLLMESAQAHQKSAEAQLERLRVHTEELDGVVRDEIRRTLVEELQMLMAESTRAASIL
Ga0210402_108559822	3300021478	Soil	MTERAPALDDATMKFGLLMESAQAHQRLAESQLEKLRAHTRDLDGVVRDEIRRTLIDEMQMLTAESRRAIQVLQRI
Ga0224557_12785771	3300023101	Soil	VPIMSDRTPALDDATMKVGLLMESAQVHQKLAEGQLEKLRAHTQDLDAVVRDEIRRTLVEELQTLTVETT
Ga0247691_10323911	3300024222	Soil	MSDRAVPDDTTMTVGLLMESAQVHQKLAEGQLEKLQAHTADLDAVVRDEIRRTLVDELQMLTAETT
Ga0209732_10393751	3300027117	Forest Soil	MTERSATLDDTTMKVGLLMESAQAHQKLAEGQLEKLRAHTQDLDSVVRDEIRRTLVEELRALTAEATRATRALQ
Ga0208985_10922341	3300027528	Forest Soil	MSERGVTLDDATLKVGLLMESAQAHQKLAEGQLERLRAHTQDLDGVVRDEIRRTLVEELRALTAE
Ga0209448_102622041	3300027783	Bog Forest Soil	MTERAAAADDSTMKFGLLMESAQAHQRLAESQLDKLRAHTQDLDSVVRNEIRRTLIDELQMLTAETTRAARTLQSVGRGAGLRV
Ga0209701_104052991	3300027862	Vadose Zone Soil	MTDRVRAIDDTTMNFGLLMESAQAHQKLAESHLEQLRAHTRDLDAVVRDEIRRTLIEELQMLWAESKR
Ga0209169_107205122	3300027879	Soil	MSERAGTVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAAQALK
Ga0209624_108127152	3300027895	Forest Soil	MSDRAAVDDATMQVGLLMESAQVHQKLAEGQLEKLRAHTADLDAVVRDEIRRTLVDELQLLTAET
Ga0209006_104094021	3300027908	Forest Soil	MTDRAPTMDDATMKFGLLMESAQVHQKSAEAQLEKLRAHTEDLDGVVRGEIRRTLVEELQMLSTESRRAAQ
Ga0209006_104822331	3300027908	Forest Soil	MSDRAPAMDDATMKFGLLMESAQAHQKLAETHLERLRAHTQDLDGVVRDEIRRTLIEELQMLTAES
Ga0209006_105473941	3300027908	Forest Soil	MGDRAVADDATMKLGLLMESAQVHQKLAEGQLEKLRAHTADLDVVVRDEIRRTLVDELQLLTAE
Ga0137415_104224382	3300028536	Vadose Zone Soil	MTDRVRAIDDTTMSVGLLMESAQAHQKLAESHLEQLRAHTRDLDAVVRDEIRRTLIEEL
Ga0302221_103696352	3300028806	Palsa	MSDHTQTMDDSTMKFGLLMESAQAHQKLAETHLEELRAHTRDLDGVVRDEIRRTLIEELRTLTAETQRATESLRKIRRSATLRI
Ga0302154_101998821	3300028882	Bog	MKFGLLLESAQSQQKLAEEHLERLKAHSQDLDGIVREEIRRTLIDELQTVATETRLAAQSLQRLRHAANARAAFWSVGVT
Ga0311361_113757481	3300029911	Bog	MGRRVIDRTHALDENTVKIGLLMESAETQQRLAETHLETLRAHTRGLDAVVREEIRRTLVDELAALSAEADR
Ga0311358_107313371	3300029915	Bog	MMDEATMKLGLLMESAQAHQKLAETHLEKLRAHTQDLDGVVRDEIRRTLIEELQFLTSESKRCAEAL
Ga0311340_110444261	3300029943	Palsa	MTDHAATLDDATMKVGLLMESAQAHQKLAEGQLERLRAHTQDLDSVVRDEIRRTLV
Ga0311340_115440572	3300029943	Palsa	MSEHAGSVDETTMKFGLLMESAQAHQKMAEIHLEKLRMHTQDLDGVVREEIRRTLVEE
Ga0311343_108326871	3300029953	Bog	MNESGPRVDEETMKFGLLMESAQAHQRLAETHLEKLRAHTRDLDGVVRDEIRRTLVDELKSLTAESDCAARALRDMKRA
Ga0311339_100762601	3300029999	Palsa	MTDHAATLDDATMNVGLLMESAQAHQKLAEGQLERLRAHTQDLDSVVRDEIRRTLV
Ga0311338_114548811	3300030007	Palsa	MGVSEHEAVDEHTMKFGLLMESAQAHQKLAEAHLEKLRAHTQDLDGVVRDEIRRTLVDELQSVTAEIERAARALRAMKHAAN
Ga0302178_104997952	3300030013	Palsa	MNDRAPAMDDTTLKFGLLMESAQAHQKLAETHLEKLRTHTQDLDGVVREEIRRTLIEELQELTAEAKRAIQALQGMKRAANMRGL
Ga0311353_110242502	3300030399	Palsa	MGVSEREAVDEHTMKFGLLMESAQAHQKLAEAHLEKLRAHTQDLDGVVRDEIRRTLVDELQSVTAEI
Ga0310037_104312372	3300030494	Peatlands Soil	VSDGARAMDEPSMKIGLLMESAQAHQKMAETQLERLRAHTQDLDEIVREEIRRTLIEELQSLTAESKRAVQALSNMKRAAN
Ga0311370_103218861	3300030503	Palsa	VSDAAAIDDKTMAFGLLMESAQAHQKLAESQLQKLRDHTRDLDGVVRDEIRRT
Ga0311370_105892622	3300030503	Palsa	MAVSDRAGSVDETTMKFGLLMESAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAAQALKGMKRA
Ga0302183_103236971	3300030509	Palsa	MSDHTQTMDDSTMKFGLLMESAQAHQKLAETHLEELRAHTRDLDGVVRDEIRRTLIEELRTLTAETQRATESLRKIRRSATLR
Ga0311372_107164411	3300030520	Palsa	MNERTDTFDETTMKFGLLMESAQAHQKMAEMHLEKLRAHTQDLDGVVREEIRRTLV
Ga0311357_101295141	3300030524	Palsa	MDGDTVKIGLLMESAQAHQKLAEAHLERLQSHMHELDGVVREEIRRTLTEELRELTEESKRAAHA
Ga0311357_101752193	3300030524	Palsa	MNDRAPAMDDTTLKFGLLMESAQAHQKLAETHLEKLRTHTQDLDGVVREEIRRTLIEELQELTAEAKRA
Ga0311356_113648481	3300030617	Palsa	VSDAAAIDDKTMAFGLLMESAQAHQKLAESQLQKLRDHTRDLDGVVRDEIRR
Ga0311356_119439531	3300030617	Palsa	MAMSERAGTIDETTMKFGLLMESAQAHQKMAEIHLEKLRAHTRDLDGVVREEIRRTLVEELDELTAESRRAALAL
Ga0302317_104509112	3300030677	Palsa	MAERAGGVDETTMKFGLLMQSAQAHQKMAESHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAARSLKE
Ga0265753_10779922	3300030862	Soil	MNERAMDEATTKFGLLMESAQAHQKLAETHLDKLRAHTQDLDGVVRDEIRRTLVEELQMLTAESRRAAEVLRRIRRSTGL
Ga0302324_1002537011	3300031236	Palsa	MNDRAQGVDNATLKLGMLMESAQAHQQLAETHLERLRAHTRDLDGVVRDEIRRTLVEELRLLTAETGRATEALRKI
Ga0302324_1021071762	3300031236	Palsa	MAMSERTGTIDETTMKFGLLMESAQAHQKMAEIHLEKLRAHTQDLDGVVREEIRRTLVEELDELTAESRRAALALKGMKRA
Ga0311364_120412522	3300031521	Fen	MKFGLLMESAQAHQKLAETHLEQLRAHTQDLDGVVRDEIRRTMIEELQMLTAETRH
Ga0302320_121770822	3300031524	Bog	MNESGPRVDEETMKFGLLMESAQAHQRLAETHLEKLRAHTRDLDGVVRDEIRRTLVDELKSLTAE
Ga0310686_1057027711	3300031708	Soil	MRFERFKVGTMNERAMDEATTKFGLLMESAQAHQKLAETHLDKLRAHTQDLDGVVRDEIRRTLIEELQMLTAESRRAAEV
Ga0310686_1126043611	3300031708	Soil	MAVSEREAMDEHTMKFGLLMESAQAHQKLAEVHLEKLRAHTQDLDGVVRDEIRRTLVDELQAVTTESDRA
Ga0310686_1193482852	3300031708	Soil	MNELSNVMDGETMKFGLLMESAQAHQKLAETHLEKLRAHTQDLDGVVREEIRRTLIDELQALTAESNRAARALQGMKHAANMRAAA
Ga0307474_101272253	3300031718	Hardwood Forest Soil	VSERAAALDDATLKVGLLMESAQAHQKLAESQLERLRAHTQDLDGVVRDEIRRTLAEELR
Ga0302319_115286902	3300031788	Bog	MSEVAAPIDDATMKFGLLMESAQTHQKLAETHLERLRAHTEDLDDVVREEIRRTLAEELA
Ga0307478_103548122	3300031823	Hardwood Forest Soil	MNDGSHALDDATMKFGLLMESAQAHQKSAEAQLEKLRAHTDDLDGVVRDEIRRTLVEELQLLTAESTRATQILRRAGRG
Ga0307478_109471671	3300031823	Hardwood Forest Soil	MSDRAVADDTTMKVGLLMESAQVHQKLAEGQLEKLRAHTADLDAVVRDEIRRTLVDELQM
Ga0311301_107519812	3300032160	Peatlands Soil	MSERAQVVDDDTMKFGLLMESAQAHQRLAESHLEKLRAHTQDLDGLVREEIRRTLVDELKTLTAES
Ga0307471_1028518451	3300032180	Hardwood Forest Soil	MTDRVRAIDDTTMSVGLLMESAQAHQKLAESHLEQLRAHTRDLDAVVRDEIRRTLIEELQLLWAESKRATEALQRVRRGASVRFGLW
Ga0370515_0131521_3_248	3300034163	Untreated Peat Soil	MTERAPAMDDDTMKFGLLMESARAHQKLAENHLEKLRAHTEDLDGLVRGEIRRTLIDELRTLTAESDRAAMALRRMKRTANM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088115

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences