Metagenome / Metatranscriptome Family F088098

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F088098
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	63 residues
Representative Sequence	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKYNADER
Number of Associated Samples	64
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.90 %
% of genes near scaffold ends (potentially truncated)	33.03 %
% of genes from short scaffolds (< 2000 bps)	77.98 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (51.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (83.486 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (65.138 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 82.81% β-sheet: 0.00% Coil/Unstructured: 17.19%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07978	NIPSNAP	2.75
PF00903	Glyoxalase	1.83
PF07681	DoxX	1.83
PF03150	CCP_MauG	1.83
PF13714	PEP_mutase	1.83
PF14023	DUF4239	1.83
PF03061	4HBT	0.92
PF00015	MCPsignal	0.92
PF01527	HTH_Tnp_1	0.92
PF09351	DUF1993	0.92
PF03330	DPBB_1	0.92
PF13505	OMP_b-brl	0.92
PF13181	TPR_8	0.92
PF01695	IstB_IS21	0.92
PF03446	NAD_binding_2	0.92
PF00872	Transposase_mut	0.92
PF07238	PilZ	0.92
PF11563	Protoglobin	0.92
PF01734	Patatin	0.92
PF13426	PAS_9	0.92
PF13432	TPR_16	0.92
PF13191	AAA_16	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.83
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.83
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.83
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.92
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.92
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.38 %
Unclassified	root	N/A	48.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.37 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.61 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.10 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.75 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.75 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.83 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.92 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	2.75 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	1.83 %
Enterovirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga	1.83 %
Citrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter	0.92 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.75 %
unclassified Enterovirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga → unclassified Enterovirga	1.83 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	1.83 %
unclassified Citrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter → unclassified Citrobacter	0.92 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.75 %
Enterovirga sp. DB1703	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga → unclassified Enterovirga → Enterovirga sp. DB1703	1.83 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1.83 %
Cystobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter	0.92 %
Citrobacter sp. AAK_AS5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter → unclassified Citrobacter → Citrobacter sp. AAK_AS5	0.92 %
Bradyrhizobium sp. 1(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	0.92 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.62 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.75 %
Enterovirga sp. DB1703	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga → unclassified Enterovirga → Enterovirga sp. DB1703	1.83 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1.83 %
Cystobacter fuscus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter → Cystobacter fuscus	0.92 %
Citrobacter sp. AAK_AS5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter → unclassified Citrobacter → Citrobacter sp. AAK_AS5	0.92 %
Bradyrhizobium sp. 1(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	0.92 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10004842	All Organisms → cellular organisms → Bacteria	9513	Open in IMG/M
3300000567\|JGI12270J11330_10037785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2736	Open in IMG/M
3300009518\|Ga0116128_1081311	Not Available	976	Open in IMG/M
3300009519\|Ga0116108_1004994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5775	Open in IMG/M
3300009519\|Ga0116108_1037290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1582	Open in IMG/M
3300009521\|Ga0116222_1109717	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300009521\|Ga0116222_1167984	Not Available	944	Open in IMG/M
3300009522\|Ga0116218_1101728	Not Available	1308	Open in IMG/M
3300009522\|Ga0116218_1180908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	955	Open in IMG/M
3300009523\|Ga0116221_1029830	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300009524\|Ga0116225_1386041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	623	Open in IMG/M
3300009547\|Ga0116136_1143810	Not Available	606	Open in IMG/M
3300009552\|Ga0116138_1045819	Not Available	1265	Open in IMG/M
3300009552\|Ga0116138_1075439	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300009623\|Ga0116133_1210417	Not Available	525	Open in IMG/M
3300009630\|Ga0116114_1099385	Not Available	774	Open in IMG/M
3300009632\|Ga0116102_1050958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300009636\|Ga0116112_1154937	Not Available	638	Open in IMG/M
3300009637\|Ga0116118_1017186	Not Available	2744	Open in IMG/M
3300009641\|Ga0116120_1202342	Not Available	629	Open in IMG/M
3300009643\|Ga0116110_1225807	Not Available	603	Open in IMG/M
3300009645\|Ga0116106_1003435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6843	Open in IMG/M
3300009645\|Ga0116106_1014357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2855	Open in IMG/M
3300009645\|Ga0116106_1031296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1825	Open in IMG/M
3300009665\|Ga0116135_1318498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	617	Open in IMG/M
3300009672\|Ga0116215_1045949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1986	Open in IMG/M
3300009672\|Ga0116215_1279758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300009700\|Ga0116217_10024040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga → unclassified Enterovirga → Enterovirga sp. DB1703	4753	Open in IMG/M
3300009700\|Ga0116217_10255116	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300009824\|Ga0116219_10429244	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300010343\|Ga0074044_10628098	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300010379\|Ga0136449_100650968	Not Available	1781	Open in IMG/M
3300010379\|Ga0136449_101002707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1344	Open in IMG/M
3300010379\|Ga0136449_101219941	Not Available	1182	Open in IMG/M
3300010379\|Ga0136449_101348358	Not Available	1107	Open in IMG/M
3300010379\|Ga0136449_101785503	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300010379\|Ga0136449_103097292	Not Available	646	Open in IMG/M
3300010379\|Ga0136449_103153380	Not Available	638	Open in IMG/M
3300014155\|Ga0181524_10087175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1789	Open in IMG/M
3300014155\|Ga0181524_10253315	Not Available	826	Open in IMG/M
3300014156\|Ga0181518_10023179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4207	Open in IMG/M
3300014156\|Ga0181518_10054160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2393	Open in IMG/M
3300014156\|Ga0181518_10202260	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300014158\|Ga0181521_10133622	Not Available	1455	Open in IMG/M
3300014158\|Ga0181521_10442426	Not Available	632	Open in IMG/M
3300014159\|Ga0181530_10045980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2904	Open in IMG/M
3300014159\|Ga0181530_10201569	Not Available	1094	Open in IMG/M
3300014162\|Ga0181538_10228803	Not Available	1032	Open in IMG/M
3300014162\|Ga0181538_10305565	Not Available	863	Open in IMG/M
3300014162\|Ga0181538_10537840	Not Available	613	Open in IMG/M
3300014164\|Ga0181532_10009370	All Organisms → cellular organisms → Bacteria → Proteobacteria	7748	Open in IMG/M
3300014164\|Ga0181532_10669438	Not Available	561	Open in IMG/M
3300014199\|Ga0181535_10130227	Not Available	1595	Open in IMG/M
3300014199\|Ga0181535_10305236	Not Available	948	Open in IMG/M
3300014638\|Ga0181536_10253877	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300014638\|Ga0181536_10404440	Not Available	609	Open in IMG/M
3300014638\|Ga0181536_10519920	Not Available	516	Open in IMG/M
3300016750\|Ga0181505_10500278	Not Available	605	Open in IMG/M
3300016750\|Ga0181505_10562848	Not Available	527	Open in IMG/M
3300016750\|Ga0181505_10838127	Not Available	524	Open in IMG/M
3300017925\|Ga0187856_1009706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Enterovirga → unclassified Enterovirga → Enterovirga sp. DB1703	5629	Open in IMG/M
3300017925\|Ga0187856_1055312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	1718	Open in IMG/M
3300017929\|Ga0187849_1213852	Not Available	747	Open in IMG/M
3300017931\|Ga0187877_1039389	Not Available	2257	Open in IMG/M
3300017935\|Ga0187848_10193152	Not Available	878	Open in IMG/M
3300017935\|Ga0187848_10249192	Not Available	750	Open in IMG/M
3300017938\|Ga0187854_10008640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6685	Open in IMG/M
3300017940\|Ga0187853_10006099	All Organisms → cellular organisms → Bacteria	8201	Open in IMG/M
3300017940\|Ga0187853_10225529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	868	Open in IMG/M
3300017942\|Ga0187808_10183966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	927	Open in IMG/M
3300017946\|Ga0187879_10015989	All Organisms → cellular organisms → Bacteria	4690	Open in IMG/M
3300017946\|Ga0187879_10027873	Not Available	3439	Open in IMG/M
3300017946\|Ga0187879_10146992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	1335	Open in IMG/M
3300017946\|Ga0187879_10504304	Not Available	671	Open in IMG/M
3300017946\|Ga0187879_10547198	Not Available	643	Open in IMG/M
3300017955\|Ga0187817_10388429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	890	Open in IMG/M
3300017998\|Ga0187870_1088295	Not Available	1221	Open in IMG/M
3300018007\|Ga0187805_10224357	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300018008\|Ga0187888_1087350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1347	Open in IMG/M
3300018008\|Ga0187888_1103686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1209	Open in IMG/M
3300018009\|Ga0187884_10199043	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300018017\|Ga0187872_10116647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1316	Open in IMG/M
3300018017\|Ga0187872_10158580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Citrobacter → unclassified Citrobacter → Citrobacter sp. AAK_AS5	1076	Open in IMG/M
3300018019\|Ga0187874_10346579	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300018026\|Ga0187857_10014986	All Organisms → cellular organisms → Bacteria → Proteobacteria	4555	Open in IMG/M
3300018037\|Ga0187883_10260775	Not Available	886	Open in IMG/M
3300018040\|Ga0187862_10889350	Not Available	510	Open in IMG/M
3300018043\|Ga0187887_10826737	Not Available	548	Open in IMG/M
3300018047\|Ga0187859_10535491	Not Available	655	Open in IMG/M
3300018057\|Ga0187858_10576480	Not Available	681	Open in IMG/M
3300018086\|Ga0187769_10344286	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300019082\|Ga0187852_1205771	Not Available	810	Open in IMG/M
3300019082\|Ga0187852_1331990	Not Available	601	Open in IMG/M
3300025500\|Ga0208686_1006289	All Organisms → cellular organisms → Bacteria → Proteobacteria	3613	Open in IMG/M
3300025500\|Ga0208686_1010691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2577	Open in IMG/M
3300025506\|Ga0208937_1022892	Not Available	1552	Open in IMG/M
3300027696\|Ga0208696_1095564	Not Available	991	Open in IMG/M
3300027854\|Ga0209517_10341613	Not Available	860	Open in IMG/M
3300027854\|Ga0209517_10475136	Not Available	686	Open in IMG/M
3300027905\|Ga0209415_10106399	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter → Cystobacter fuscus	3045	Open in IMG/M
3300028015\|Ga0265353_1033460	Not Available	517	Open in IMG/M
3300030659\|Ga0316363_10127191	Not Available	1109	Open in IMG/M
3300030706\|Ga0310039_10184928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	828	Open in IMG/M
3300032160\|Ga0311301_10217736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3228	Open in IMG/M
3300032160\|Ga0311301_10428959	Not Available	2005	Open in IMG/M
3300032160\|Ga0311301_10906171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1186	Open in IMG/M
3300032160\|Ga0311301_11083268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300032160\|Ga0311301_11090979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1040	Open in IMG/M
3300032160\|Ga0311301_11332503	All Organisms → cellular organisms → Bacteria → Proteobacteria	903	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	67.89%
Terrestrial	Environmental → Terrestrial	32.11%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.89%
Soil	Environmental → Terrestrial → Soil	32.11%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	67.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	46.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.28%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	18.35%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	29.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	29.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	18.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	17.43%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100048428	3300000567	Peatlands Soil	MFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKHILTER*
JGI12270J11330_100377857	3300000567	Peatlands Soil	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFTLNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0116128_10813112	3300009518	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER*
Ga0116108_10049945	3300009519	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0116108_10372901	3300009519	Peatland	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYSLTER*
Ga0116222_11097173	3300009521	Peatlands Soil	MLVRLGKFLGNFLYWIGRGLAVLLIAKAIILSLTLNPLIPLVFCGIGLIVWVIAIELKHILTER*
Ga0116222_11679841	3300009521	Peatlands Soil	MFVRLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0116218_11017281	3300009522	Peatlands Soil	MFARLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0116218_11809082	3300009522	Peatlands Soil	MFVRLGKFLGIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0116221_10298305	3300009523	Peatlands Soil	MFVILGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLIPLVFCGIGLIVWVIANELKYILTER*
Ga0116225_13860411	3300009524	Peatlands Soil	FLGNFLYWIGWGLAVLLIGIAIILSITMNPLVPLVLCGIGLIIWVFAIELKHNAD*
Ga0116136_11438101	3300009547	Peatland	AKRDDPMFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKHILTER*
Ga0116138_10458192	3300009552	Peatland	SAKRDDPMFVRLGKFLEIFLYWIGWGFAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0116138_10754392	3300009552	Peatland	MFVRFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAE*
Ga0116133_12104171	3300009623	Peatland	MFARLIKLLRSVVGNFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER*
Ga0116114_10993851	3300009630	Peatland	LYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER*
Ga0116102_10509581	3300009632	Peatland	MFARLIKLLGSVVANFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYSLTER*
Ga0116112_11549371	3300009636	Peatland	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVIAIELKYSAE*
Ga0116118_10171862	3300009637	Peatland	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFAIELKYNADER*
Ga0116120_12023421	3300009641	Peatland	MFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELK
Ga0116110_12258071	3300009643	Peatland	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFA
Ga0116106_10034358	3300009645	Peatland	SAKRDDPMFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER*
Ga0116106_10143576	3300009645	Peatland	MFVRFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0116106_10312963	3300009645	Peatland	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVI
Ga0116135_13184981	3300009665	Peatland	NFLYWIGWGLAVLLIAIATILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0116215_10459493	3300009672	Peatlands Soil	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYSLTER*
Ga0116215_12797582	3300009672	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLVPLIFCGTGLIVWVIAIELKYILTER*
Ga0116217_100240401	3300009700	Peatlands Soil	MFVILGKFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKHILTER*
Ga0116217_102551162	3300009700	Peatlands Soil	MFVRLGKFLGIFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0116219_104292441	3300009824	Peatlands Soil	MLVRLGKFLGNFLYWIGRGLAVLLIAIAIILSLTLNPLMPLVFCGIGLIVWVIANELKYILTER*
Ga0074044_106280981	3300010343	Bog Forest Soil	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFAIELKHNAD*
Ga0136449_1006509685	3300010379	Peatlands Soil	MLVRLGKFLGNFLYWIGRGLAVLLIAIAIILSLTLNPLMPLVFCGIGLIVWVIANELKYILTE
Ga0136449_1010027072	3300010379	Peatlands Soil	MFVRLGKFLRNFPYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLTVWMFAIELKHNAD*
Ga0136449_1012199413	3300010379	Peatlands Soil	MFVRLGKFLAIFLYWIGWGFAVLLIGIATILAFTLNPLIPLGLCGIGLIVWVFAIELKYNADER*
Ga0136449_1013483582	3300010379	Peatlands Soil	MFVILGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLIPLVFCGIGLIVWVIAIELKYILTER*
Ga0136449_1017855032	3300010379	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITMNPLVPLVLCGIGLIIWVFAIELKHNAD*
Ga0136449_1030972921	3300010379	Peatlands Soil	SAKRDDPMFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKHILTER*
Ga0136449_1031533801	3300010379	Peatlands Soil	MLVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVIALEFKYILTER*
Ga0181524_100871754	3300014155	Bog	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0181524_102533152	3300014155	Bog	MFVRLGRFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKYNADER*
Ga0181518_1002317910	3300014156	Bog	SAKRDDPMFVRLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0181518_100541602	3300014156	Bog	MLVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVIAIELKYSAE*
Ga0181518_102022601	3300014156	Bog	MFVRLGKLLKNFFYWIGWGLAILLIGIATILAFILNPLIPLLVCGIGLIVWVFAYELKYGADER*
Ga0181521_101336224	3300014158	Bog	MFVRLGKLLKNFFYWIGWGLAILLIGIATILAFILNPLIPLLVCGIGLIVWVFACDLKYGADER*
Ga0181521_104424261	3300014158	Bog	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYS
Ga0181530_100459803	3300014159	Bog	MFVRFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVIAIELKYSAE*
Ga0181530_102015691	3300014159	Bog	KFLGIFLYWIGWGFAVLLIGIATILAFTFNPLIPLVLCGIGLIVWVFAIELKYNADER*
Ga0181538_102288032	3300014162	Bog	MFVRLGRFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD*
Ga0181538_103055651	3300014162	Bog	MFVRLGKFLGNFLYWIGWGLALLLIAIAIILSLTLNPLVPLVFCGIGLIVWVIAIELKYILTER*
Ga0181538_105378401	3300014162	Bog	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFAIELKYN
Ga0181532_100093702	3300014164	Bog	MFVRLGKFLKNFFYWIGWGLAILLIGIATILAFTFNPLIPLLVCGIGLIVWVFAYELKYGADER*
Ga0181532_106694381	3300014164	Bog	MFVILGKVLGNFLYWIGWGLAVLLIAIAIILSLTLNPLIPLVFCGIGLIVWVIANELKYILTER*
Ga0181535_101302271	3300014199	Bog	RLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0181535_103052361	3300014199	Bog	LEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER*
Ga0181536_102538771	3300014638	Bog	MFVRLGKFLGNFLYWIGWGLALLLIAIAIILSLTLNPLIPLVFCGIGLIVWVIANELKYILTER*
Ga0181536_104044401	3300014638	Bog	SAKRDDPMFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLCGIGLIVWVFALELKNNADER*
Ga0181536_105199201	3300014638	Bog	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTFNPLIPLVLCGIGLIVWVFAIELKYNADER*
Ga0181505_105002781	3300016750	Peatland	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLI
Ga0181505_105628482	3300016750	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALEL
Ga0181505_108381271	3300016750	Peatland	AKRDDPMFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTFNPLIPLVLCGIGLIVWVFAIELKYNADER
Ga0187856_10097063	3300017925	Peatland	MFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKHILTER
Ga0187856_10553124	3300017925	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFTLNPLIPLVLCGIGLIVWVFALELKNNADER
Ga0187849_12138521	3300017929	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLCGIGLIVWVFALELKNNADER
Ga0187877_10393892	3300017931	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER
Ga0187848_101931521	3300017935	Peatland	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0187848_102491921	3300017935	Peatland	EIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER
Ga0187854_100086401	3300017938	Peatland	MSTSAKRDDPMFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKHILTER
Ga0187853_1000609911	3300017940	Peatland	RLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADE
Ga0187853_102255293	3300017940	Peatland	MLVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVFAIELRHNAD
Ga0187808_101839662	3300017942	Freshwater Sediment	MFVRLGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLVPLVFCGIGLIVWVIAIELKYNLTER
Ga0187879_100159891	3300017946	Peatland	SAKRDDPMFVRLGKFLEIFLYWIGWGLAVLLIGIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER
Ga0187879_100278736	3300017946	Peatland	MFVRLGKFLKNFFYWIGWGLAILLIGIATILAFTFNPLIPLLVCGIGLIVWVFAYELKYGADER
Ga0187879_101469924	3300017946	Peatland	ARLIKLLRSVVGNFLYWIGWGLAVLLIAIATILSITLNPLVPLILGGIGLIVWVIAIELKYILTER
Ga0187879_105043041	3300017946	Peatland	KRDDPMFVRFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0187879_105471982	3300017946	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFALELKNNADER
Ga0187817_103884292	3300017955	Freshwater Sediment	MFARLGKFLGNFFYWIGWGLAVLLIGIAIILSITMNPLVPLVLCGIGLIVWVFAIELKHNAD
Ga0187870_10882951	3300017998	Peatland	MSTSAKRDDPMFVRLGKFLGNFLYCIGWGLAVLLIVMAIILSITWNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0187805_102243572	3300018007	Freshwater Sediment	VRLGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLVPLVFCGIGLIVWVIAIELKYNLTER
Ga0187888_10873501	3300018008	Peatland	MLVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELRHNAD
Ga0187888_11036862	3300018008	Peatland	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIE
Ga0187884_101990431	3300018009	Peatland	MFVRFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0187872_101166474	3300018017	Peatland	VRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELRHNAD
Ga0187872_101585801	3300018017	Peatland	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKY
Ga0187874_103465792	3300018019	Peatland	MSTSAKRDDPMFVRLGKFLGNFLYCIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIEL
Ga0187857_100149863	3300018026	Peatland	MGNFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYSLTER
Ga0187883_102607751	3300018037	Peatland	MFVRLGRFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD
Ga0187862_108893501	3300018040	Peatland	MFVRFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKY
Ga0187887_108267371	3300018043	Peatland	FVRFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0187859_105354911	3300018047	Peatland	MFVRLGKFLKNFFYWIGWGLAILLIGIATILAFTFNPLIPLLVCGIGLIVWVFACDLKYGADER
Ga0187858_105764801	3300018057	Peatland	MFVRLGKLLKNFFYWISWGLAILLIGIATILAFILNPLIPLLVCGIGLIVWVFACDLKYGADER
Ga0187769_103442862	3300018086	Tropical Peatland	MFVILGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLVPLVFCGIGLIVWVIAIELKYILTER
Ga0187852_12057712	3300019082	Peatland	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKYNADER
Ga0187852_13319901	3300019082	Peatland	MFVRLGKFLEIFLYWIGWGLAVLLIRIATILSFILNPLIPLVLFGIGLIVWVFALELKNNADER
Ga0208686_10062893	3300025500	Peatland	MFARLIKLLGSVVGNFLYLIGWGLAVLLIGIATILAFTLNPLVPLVLGGIGLIVWVIAIELKYSLTER
Ga0208686_10106913	3300025500	Peatland	MFVRFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVIAIELKYSAE
Ga0208937_10228924	3300025506	Peatland	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFTLNPLIPLVLCGIGLIVWVFAIELKYNADER
Ga0208696_10955642	3300027696	Peatlands Soil	MFVRLGKFLGIFLYWIGWGLAVLLIGIATILSFTLNPLIPLVLCGIGLIVWVFALELKNNADER
Ga0209517_103416132	3300027854	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILAFTMNPLVPLVLCGIGLIVWVIAIELKYSAD
Ga0209517_104751361	3300027854	Peatlands Soil	MFVRLGKFLGNFLYCIGWGLAVLLIAIAIILSITLNPLVPLVFCSIGLIVWVI
Ga0209415_101063991	3300027905	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD
Ga0265353_10334601	3300028015	Soil	MFVRLGKFLEIFLYWIGWGLAVLLIGIATLLSFILNPLIPLVLCGIGLIVWVFAIELKYNADER
Ga0316363_101271912	3300030659	Peatlands Soil	MLVRLGKFLGNFLYWIGRGLAVLLIAIAIILSLTLNPLMPLVFCGIGLIVWVIANELKYILTER
Ga0310039_101849283	3300030706	Peatlands Soil	MFARLGKFLGNFLYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLIVWVFAIELKHNAD
Ga0311301_102177363	3300032160	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIAIAIILSITLNPLVPMVFCSIGLIVWVIALEFKYILTER
Ga0311301_104289594	3300032160	Peatlands Soil	MFVRLGKFLGIFLYWIGWGFAVLLIGIATILAFILNPLIPLVLCGIGLIVWVFAIELKYNADER
Ga0311301_109061713	3300032160	Peatlands Soil	MLVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITWNPLVPLVLCGIGLIVWVFAIELKHNAD
Ga0311301_110832681	3300032160	Peatlands Soil	MFVILGKFLGNFLYWIGWGLAVLLIAIAIILSLTLNPLIPLVFCGIGLIVWVIAIELKYILTER
Ga0311301_110909792	3300032160	Peatlands Soil	MFVRLGKFLRNFPYWIGWGLAVLLIGIAIILSITLNPLVPLVLCGIGLTVWMFAIELKHNAD
Ga0311301_113325031	3300032160	Peatlands Soil	MFVRLGKFLGNFLYWIGWGLAVLLIGIAIILSITMNPLVPLVLCGIGLIIWVFAIELKHNAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088098

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences