Metagenome / Metatranscriptome Family F088028

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088028
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	65 residues
Representative Sequence	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAV
Number of Associated Samples	78
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.798 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (67.890 % of family members)
Environment Ontology (ENVO)	Unclassified (87.156 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (67.890 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.52% β-sheet: 13.04% Coil/Unstructured: 55.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13479	AAA_24	1.83
PF05063	MT-A70	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
All Organisms	root	All Organisms	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
cellular organisms	root	All Organisms → cellular organisms	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	33.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	33.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	13.76 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.80 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	12.84 %
Bradyrhizobium sp. Gha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Gha	0.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005363\|Ga0008090_14985542	Not Available	592	Open in IMG/M
3300005713\|Ga0066905_101290964	Not Available	656	Open in IMG/M
3300005764\|Ga0066903_102995515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	915	Open in IMG/M
3300005764\|Ga0066903_103810310	Not Available	810	Open in IMG/M
3300005764\|Ga0066903_108446461	Not Available	525	Open in IMG/M
3300010358\|Ga0126370_10582383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	962	Open in IMG/M
3300010358\|Ga0126370_11015233	Not Available	758	Open in IMG/M
3300010376\|Ga0126381_105154578	Not Available	500	Open in IMG/M
3300010398\|Ga0126383_13382246	Not Available	521	Open in IMG/M
3300012201\|Ga0137365_10087863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2341	Open in IMG/M
3300012210\|Ga0137378_11561549	Not Available	570	Open in IMG/M
3300012359\|Ga0137385_10866145	Not Available	748	Open in IMG/M
3300016294\|Ga0182041_10929005	Not Available	783	Open in IMG/M
3300016294\|Ga0182041_11241260	Not Available	681	Open in IMG/M
3300016294\|Ga0182041_11413309	Not Available	639	Open in IMG/M
3300016341\|Ga0182035_10614893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	940	Open in IMG/M
3300016341\|Ga0182035_11795446	Not Available	555	Open in IMG/M
3300016357\|Ga0182032_10049204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2723	Open in IMG/M
3300016371\|Ga0182034_10146874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1765	Open in IMG/M
3300016387\|Ga0182040_11424052	Not Available	587	Open in IMG/M
3300016422\|Ga0182039_10524691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1026	Open in IMG/M
3300016445\|Ga0182038_11071428	Not Available	716	Open in IMG/M
3300021560\|Ga0126371_10598611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1251	Open in IMG/M
3300027874\|Ga0209465_10570123	Not Available	562	Open in IMG/M
3300031543\|Ga0318516_10218384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1102	Open in IMG/M
3300031543\|Ga0318516_10659335	Not Available	595	Open in IMG/M
3300031544\|Ga0318534_10718634	Not Available	564	Open in IMG/M
3300031545\|Ga0318541_10268721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	949	Open in IMG/M
3300031564\|Ga0318573_10292375	Not Available	872	Open in IMG/M
3300031564\|Ga0318573_10765856	Not Available	519	Open in IMG/M
3300031573\|Ga0310915_10520893	Not Available	844	Open in IMG/M
3300031573\|Ga0310915_10759558	Not Available	683	Open in IMG/M
3300031573\|Ga0310915_10959540	Not Available	598	Open in IMG/M
3300031640\|Ga0318555_10492654	Not Available	664	Open in IMG/M
3300031668\|Ga0318542_10738334	Not Available	515	Open in IMG/M
3300031680\|Ga0318574_10250019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1025	Open in IMG/M
3300031682\|Ga0318560_10654126	Not Available	569	Open in IMG/M
3300031724\|Ga0318500_10040667	All Organisms → cellular organisms → Bacteria → Proteobacteria	1925	Open in IMG/M
3300031724\|Ga0318500_10276386	Not Available	819	Open in IMG/M
3300031724\|Ga0318500_10615801	Not Available	551	Open in IMG/M
3300031736\|Ga0318501_10453379	Not Available	696	Open in IMG/M
3300031736\|Ga0318501_10732446	Not Available	546	Open in IMG/M
3300031747\|Ga0318502_10233824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1070	Open in IMG/M
3300031748\|Ga0318492_10131114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1253	Open in IMG/M
3300031763\|Ga0318537_10258551	Not Available	645	Open in IMG/M
3300031764\|Ga0318535_10023826	All Organisms → cellular organisms → Bacteria → Proteobacteria	2388	Open in IMG/M
3300031768\|Ga0318509_10583195	Not Available	623	Open in IMG/M
3300031770\|Ga0318521_10484950	Not Available	742	Open in IMG/M
3300031770\|Ga0318521_10715021	Not Available	608	Open in IMG/M
3300031780\|Ga0318508_1200127	Not Available	572	Open in IMG/M
3300031780\|Ga0318508_1250672	Not Available	509	Open in IMG/M
3300031792\|Ga0318529_10103829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1285	Open in IMG/M
3300031796\|Ga0318576_10121156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1207	Open in IMG/M
3300031797\|Ga0318550_10278523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	811	Open in IMG/M
3300031819\|Ga0318568_10369713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	893	Open in IMG/M
3300031845\|Ga0318511_10572440	Not Available	525	Open in IMG/M
3300031859\|Ga0318527_10418356	Not Available	571	Open in IMG/M
3300031860\|Ga0318495_10202138	Not Available	894	Open in IMG/M
3300031879\|Ga0306919_10087012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2168	Open in IMG/M
3300031879\|Ga0306919_10102659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	2015	Open in IMG/M
3300031880\|Ga0318544_10013810	All Organisms → cellular organisms → Bacteria → Proteobacteria	2611	Open in IMG/M
3300031880\|Ga0318544_10446281	Not Available	504	Open in IMG/M
3300031890\|Ga0306925_10052407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	4256	Open in IMG/M
3300031893\|Ga0318536_10365239	Not Available	730	Open in IMG/M
3300031893\|Ga0318536_10589294	Not Available	556	Open in IMG/M
3300031896\|Ga0318551_10718699	Not Available	579	Open in IMG/M
3300031897\|Ga0318520_10097077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1648	Open in IMG/M
3300031912\|Ga0306921_10109421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3210	Open in IMG/M
3300031941\|Ga0310912_10243752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1382	Open in IMG/M
3300031941\|Ga0310912_11431526	Not Available	521	Open in IMG/M
3300031942\|Ga0310916_10767860	Not Available	813	Open in IMG/M
3300031945\|Ga0310913_10072322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2287	Open in IMG/M
3300031945\|Ga0310913_10455095	Not Available	909	Open in IMG/M
3300031946\|Ga0310910_10234162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1433	Open in IMG/M
3300031947\|Ga0310909_10020213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4785	Open in IMG/M
3300031954\|Ga0306926_12745234	Not Available	533	Open in IMG/M
3300031981\|Ga0318531_10415558	Not Available	609	Open in IMG/M
3300032001\|Ga0306922_10404315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1462	Open in IMG/M
3300032001\|Ga0306922_10425240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1421	Open in IMG/M
3300032035\|Ga0310911_10009229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4436	Open in IMG/M
3300032039\|Ga0318559_10466997	Not Available	589	Open in IMG/M
3300032041\|Ga0318549_10445419	Not Available	583	Open in IMG/M
3300032042\|Ga0318545_10348090	Not Available	533	Open in IMG/M
3300032043\|Ga0318556_10130404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1290	Open in IMG/M
3300032044\|Ga0318558_10243992	Not Available	883	Open in IMG/M
3300032044\|Ga0318558_10323398	Not Available	764	Open in IMG/M
3300032044\|Ga0318558_10672804	Not Available	517	Open in IMG/M
3300032051\|Ga0318532_10030097	All Organisms → cellular organisms → Bacteria → Proteobacteria	1804	Open in IMG/M
3300032051\|Ga0318532_10070256	Not Available	1218	Open in IMG/M
3300032051\|Ga0318532_10077867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1158	Open in IMG/M
3300032051\|Ga0318532_10130496	Not Available	891	Open in IMG/M
3300032052\|Ga0318506_10006956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3573	Open in IMG/M
3300032055\|Ga0318575_10147730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Gha	1167	Open in IMG/M
3300032059\|Ga0318533_10038061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3152	Open in IMG/M
3300032060\|Ga0318505_10262006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	814	Open in IMG/M
3300032060\|Ga0318505_10584474	Not Available	525	Open in IMG/M
3300032064\|Ga0318510_10294885	Not Available	675	Open in IMG/M
3300032067\|Ga0318524_10610880	Not Available	574	Open in IMG/M
3300032068\|Ga0318553_10331825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	796	Open in IMG/M
3300032076\|Ga0306924_10265601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1971	Open in IMG/M
3300032091\|Ga0318577_10198571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300032261\|Ga0306920_100364524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	2149	Open in IMG/M
3300032261\|Ga0306920_101489145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	967	Open in IMG/M
3300032261\|Ga0306920_103127564	Not Available	621	Open in IMG/M
3300033289\|Ga0310914_10168498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1942	Open in IMG/M
3300033289\|Ga0310914_11434398	Not Available	593	Open in IMG/M
3300033290\|Ga0318519_10205998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1123	Open in IMG/M
3300033290\|Ga0318519_11051054	Not Available	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.41%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	87.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	67.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0008090_149855422	3300005363	Tropical Rainforest Soil	MSAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPNDQNPVPSRFTLDDIENMVKTAVSD
Ga0066905_1012909641	3300005713	Tropical Forest Soil	MSAQVDATTVRQFIEIISAHAAQIINGADQTGVLQLCRIHPLDEKRVVPSRFGIH
Ga0066903_1029955151	3300005764	Tropical Forest Soil	MNAPQPDEATVRQFLEIISAHATQIINGGGPTGLLQLCNIDPADGRVVPTRFNLDEVERMVKTAIEGA
Ga0066903_1038103103	3300005764	Tropical Forest Soil	MTAQVDEATVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIEN
Ga0066903_1084464612	3300005764	Tropical Forest Soil	MSAQVDETTVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIEN
Ga0126370_105823833	3300010358	Tropical Forest Soil	MSARVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAVSDALAGH
Ga0126370_110152332	3300010358	Tropical Forest Soil	MSAQIDEATVRQFIELISEHARATTNGAGQPGVLQIYRLNPIDESTVPSRFLLDDVDNMVKTAVGDAINGFNIYI
Ga0126381_1051545782	3300010376	Tropical Forest Soil	MSAQVDEATVRQFIEIISAHARQVIHGAGPPGVLQLSRLNPLDESIVPSRFLLGD
Ga0126383_133822462	3300010398	Tropical Forest Soil	MTVPVDEVTVRQHIKIISEHALQAINGAGPPGVLQLCRLNPIDESIVPSRFTLDDVENMVKTAVGDAL
Ga0137365_100878635	3300012201	Vadose Zone Soil	MTAQVDEATVRQFIEIISAHARQVINGTGPKGVLQLCRLNPIDESIVPSRFTLDDVENMVRTAVGDALAGHNA
Ga0137378_115615492	3300012210	Vadose Zone Soil	MTAQVDEATVRQFIEIISAHARQVINGTGPKGVLQLCRLNPIDESIVPSRFTLDDVENMV
Ga0137385_108661452	3300012359	Vadose Zone Soil	MSAQVDATTVRQFIEIISAHAAQIINGADRTGVLQLCRIHPLDENGVVPSRFGIDDVEEMVKTA
Ga0182041_109290051	3300016294	Soil	MTAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVESMVRTAVGDALAGHN
Ga0182041_112412602	3300016294	Soil	MSAQVDEATVRQFIELISEHVRATTNGAGQPGVLQIYRLNPIDESTVPSRFLLDDVDN
Ga0182041_114133091	3300016294	Soil	MTAQVDEATVRQFIEIISAHARQVISSAGPPGVLQLCRLNPIDDKVVPSRFTLDDIENMVKTAVADALAGHNAYI
Ga0182035_106148934	3300016341	Soil	MTAQVDEVTVRQFLEIINAHAAQVINGAGPPGVLQLCRINPNDENSVVPSRFQIGDVEHMLATA
Ga0182035_117954462	3300016341	Soil	MSVQVDEATVRQFIEIISAHVRQAINGAGPPGVLQICRINPIDESVVPSRFMLDDIENMTKTA
Ga0182032_100492041	3300016357	Soil	MTAQVDEATVRRFIEIISAHARQAINGAGPQGVLQLCRLNPIDESIVPSRFTLDDIENMV
Ga0182034_101468745	3300016371	Soil	MTAQVDEVTVRQFLEIINAHAAQVINGAGPPGVLQLCRINPNDENSVVPSRFQIGDVE
Ga0182040_114240521	3300016387	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAV
Ga0182039_105246913	3300016422	Soil	MTAQVDEATVRQFIAIISAHARQVINGAGPSGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVAD
Ga0182038_110714281	3300016445	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVHTAISDALA
Ga0126371_105986111	3300021560	Tropical Forest Soil	MSAPIDEATVRQFLEIISEHARTVINGGDPTGVLQLDRLNPLDDKILPSRFALDDVERMVAAAICDAAS
Ga0209465_105701231	3300027874	Tropical Forest Soil	MSAQVDETTVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAVSDALAGHNAYIE
Ga0318516_102183841	3300031543	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKT
Ga0318516_106593351	3300031543	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDHSPIPSRFTLDDIENMV
Ga0318534_107186342	3300031544	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDKSPIPSRFTLDDIENMVRTAVADALAGHNAYIEA
Ga0318541_102687211	3300031545	Soil	VTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVADALAGHN
Ga0318573_102923753	3300031564	Soil	MTAQVDEATVRQFIELISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMV
Ga0318573_107658562	3300031564	Soil	MTAQVDEATVRQFIEIISAHVQQVINGTGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVRTAVGDALAGHN
Ga0310915_105208933	3300031573	Soil	MTAQVDEATVRQFIEIISAHVQQVINGTGPKGVLQLSRLNPLDERLVPSRFTLDDGE
Ga0310915_107595582	3300031573	Soil	MTVQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDHSPIPSRFTLDDVESMVRTAVADALAGHNAYI
Ga0310915_109595401	3300031573	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDHSPIPSRFTLDDIENMVRTAVAD
Ga0318555_104926541	3300031640	Soil	MSAQVDETTVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMV
Ga0318542_107383341	3300031668	Soil	MSTQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVENMVKTAVGDALAG
Ga0318574_102500193	3300031680	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIESMVRTAVGDALAGHNAYI
Ga0318560_106541261	3300031682	Soil	MTAQVDEATVRQFIEIISAHVQQVINGTGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVRTAVGDALAGHNIYI
Ga0318500_100406675	3300031724	Soil	VTAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKTAVADALAGHNAYIE
Ga0318500_102763861	3300031724	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVRTAVGDALSGHNAY
Ga0318500_106158011	3300031724	Soil	MTAQVDEATVRQFIAIISAHARQVINGAGPSGVLQLCRLNPIDEKVVPSRFTLDDIE
Ga0318501_104533791	3300031736	Soil	MNAEVDEATVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLD
Ga0318501_107324462	3300031736	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVRTAVGD
Ga0318502_102338244	3300031747	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDKSPIPSRFTLDDIENMVRTA
Ga0318492_101311144	3300031748	Soil	MTAQVDEVTVRQFLEIINAHAAQVINGAGPPGVLQLCRINPNDENSVVPSRFQIGDVEHMLATALGDA
Ga0318537_102585511	3300031763	Soil	MSAQVDEATVRQFIEIIAAHARQVINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVES
Ga0318535_100238266	3300031764	Soil	VTAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMV
Ga0318509_105831951	3300031768	Soil	MSAQVDEATVRQFIEIIAAHARQVINGAGPPGVLQLSRLNPLDERLVPSRFTLDD
Ga0318521_104849501	3300031770	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDKSPIPSRFTLGDVESMVRTA
Ga0318521_107150212	3300031770	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKTAVGDALAGHNAYIEARTV
Ga0318508_12001272	3300031780	Soil	MTAQVDEATVRQFIGIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVENMV
Ga0318508_12506721	3300031780	Soil	VTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVADALAGHNAYIE
Ga0318529_101038294	3300031792	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMV
Ga0318576_101211561	3300031796	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDD
Ga0318550_102785233	3300031797	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMV
Ga0318568_103697131	3300031819	Soil	MSAQVNEATVRQFIEIIAAHARQAIDGAGPPGVLQLSRLNPLDERLVPSRFTLDDIENMVRTAI
Ga0310917_105965913	3300031833	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFT
Ga0318511_105724402	3300031845	Soil	MSAQVDEATVRQFIGIIAAHARQVINSAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENM
Ga0318527_104183561	3300031859	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDKSPIPSRFTLGDVESMVRTAVADALAGHNAYIEAR
Ga0318495_102021383	3300031860	Soil	MTAQVDEATVRQFIGIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVENM
Ga0306919_100870121	3300031879	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDHSPIPSRFTLDDV
Ga0306919_101026591	3300031879	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKTAVGDALAGHNAYIEA
Ga0318544_100138101	3300031880	Soil	VTAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKTAVADALAGHNAYIEAR
Ga0318544_104462811	3300031880	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDDNPIPSRFTLDDIENMVKTAIGDALAGHN
Ga0306925_100524071	3300031890	Soil	MTAQVDEATVRQFIAIISAHARQVINGAGPSGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVADALAGHNAYIE
Ga0318536_103652391	3300031893	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLD
Ga0318536_105892941	3300031893	Soil	MSVMNAQADKAMVREFLGIISAHARQVINGTGSKGVLQLCRINPANESVVPSRFTLDDVEAMVQAAIDDAAAGHNAY
Ga0318551_107186991	3300031896	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIENMVKTAVGDALAGHNAY
Ga0318520_100970771	3300031897	Soil	MNAEVDEATVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIE
Ga0306921_101094211	3300031912	Soil	MTAQVDEATVRQFIEIISTHARQVINGAGPQGVLQLSRLNPLDHSPIPSRFTLDDIENMVRTAV
Ga0310912_102437523	3300031941	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDV
Ga0310912_114315262	3300031941	Soil	MTAHVDETTVRQFIAIISTHVTQVVNGVSPAGCLQLCRISPFDENSVVPS
Ga0310916_107678601	3300031942	Soil	MTAQVDEATVRQFIELISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVHTAISDALAG
Ga0310913_100723225	3300031945	Soil	MSAQVDEATVRQFIEIIAAHARQVINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVESMVRTAVGDALAGHNV
Ga0310913_104550951	3300031945	Soil	MTAQVDEATVRQFIELISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLGDVENMVHTAISD
Ga0310910_102341621	3300031946	Soil	MTAQVDEATVRQFIELISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVHTA
Ga0310909_100202139	3300031947	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLSRLNPLDHSPIPSRFTLDD
Ga0306926_127452342	3300031954	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVESMV
Ga0318531_104155581	3300031981	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIEN
Ga0306922_104043151	3300032001	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLCRINPIDENVVPTRFTLDDVENMVRTAVSDA
Ga0306922_104252401	3300032001	Soil	MSTQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDV
Ga0310911_100092299	3300032035	Soil	VTAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIE
Ga0318559_104669971	3300032039	Soil	MSAQVDEATVRQFIEIISTHARQIINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAIGDALAGHN
Ga0318549_104454191	3300032041	Soil	MSAQVDEATVRQFIEIISTHARQIINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAIGDALAGHNSYIE
Ga0318545_103480903	3300032042	Soil	MTAQVDEATVRQFIEIISAHARQVISSAGPPGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVADAL
Ga0318556_101304041	3300032043	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLDDVENMVRTAVSD
Ga0318558_102439923	3300032044	Soil	MSTQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVENMVKTAVGDALAGHN
Ga0318558_103233981	3300032044	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDHSPIPSRFTLDDVESMVRT
Ga0318558_106728042	3300032044	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIESMVRTAVGDALAGHNAY
Ga0318532_100300971	3300032051	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDKSPIPSRFTLGDVESMVRTAVADALAGHNA
Ga0318532_100702561	3300032051	Soil	MSAQVDEATVRQFIEIISAHARAVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAVSDALAGHNAYI
Ga0318532_100778671	3300032051	Soil	MTAQVDEATVRQFIEIISTHARQVINGAGPQGVLQLSRLNPLDHSPIPSRFTLDDIENMVRTAVSDALAGHNAYIEA
Ga0318532_101304961	3300032051	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAVNDALAGHNAYIET
Ga0318506_100069567	3300032052	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLCRLNPIDEKIVPSRFTLDDVENMVRTAVGDALAGHNSYIE
Ga0318575_101477303	3300032055	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTL
Ga0318533_100380616	3300032059	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPQGVLQLSRLNPLDKSPIPSRFTLGDVESMVRTAVADALAGHNAYIE
Ga0318505_102620061	3300032060	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDTNPIPSRFTLDDIEN
Ga0318505_105844742	3300032060	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVRTAVGDALSG
Ga0318510_102948851	3300032064	Soil	MSAQVDEATVRQFIEIISTHARQIINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVESM
Ga0318524_106108801	3300032067	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIESMV
Ga0318553_103318253	3300032068	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIENMVKTAVGDALAGHNAY
Ga0306924_102656015	3300032076	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIESMVRTAV
Ga0318577_101985711	3300032091	Soil	MSAQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVESMVRTAVG
Ga0306920_1003645241	3300032261	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDKSPIPSRFTLDDIE
Ga0306920_1014891453	3300032261	Soil	MTAQVDEATVRQFIEIISAHARQAINGAGSPGVLQLCRLNPIDESIVPSRFTLDDIENMVKTAVTDALAGHNA
Ga0306920_1031275641	3300032261	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDKSPIPSRFTLDDIENMVRTAVADALAGHNAYIEART
Ga0310914_101684984	3300033289	Soil	MSTQVDEATVRQFIEIIAAHARQAINGAGPPGVLQLSRLNPLDERLVPSRFTLDDVENMV
Ga0310914_114343981	3300033289	Soil	MSAQVDEATVRQFIGIIAAHARQVINGAGPPGVLQLSRLNPLDTNPVPSRFTLDDIESMVRTAVGDALAGHNA
Ga0318519_102059981	3300033290	Soil	MTAQVDEATVRQFIEIISAHARQVINGAGPKGVLQLSRLNPLDERLVPSRFTLD
Ga0318519_110510541	3300033290	Soil	VTAQVDEATVRQFIEIISAHARQVINGAGPPGVLQLCRLNPIDEKVVPSRFTLDDIENMVKTAVADAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088028

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences