Metagenome Family F087995

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087995
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	56 residues
Representative Sequence	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Number of Associated Samples	62
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	31.48 %
% of genes near scaffold ends (potentially truncated)	66.06 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (66.055 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.294 % of family members)
Environment Ontology (ENVO)	Unclassified (88.073 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (52.294 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066903_1017495233 2Ga0066903_1051860861 3Ga0066903_1053428962 4Ga0066903_1078945282 5Ga0066903_1079234012 6Ga0066903_1085825002 7Ga0182036_111327622 8Ga0182036_112011341 9Ga0182036_117137891 10Ga0182041_104229361 11Ga0182041_120526731 12Ga0182033_118826922 13Ga0182035_106249571 14Ga0182035_114751681 15Ga0182032_102831932 16Ga0182034_103542321 17Ga0182034_118241852 18Ga0182040_109215261 19Ga0182040_109837641 20Ga0182037_103114611 21Ga0182037_110512482 22Ga0182037_111378483 23Ga0182037_121624182 24Ga0126371_124862911 25Ga0126371_127356021 26Ga0207837_10234852 27Ga0207781_10273662 28Ga0207776_10381512 29Ga0207826_10214243 30Ga0207862_11412502 31Ga0318516_100204174 32Ga0318534_103523481 33Ga0318534_104436781 34Ga0318541_104294633 35Ga0318538_107009781 36Ga0318571_103034302 37Ga0318573_108142502 38Ga0318515_101954262 39Ga0310915_106013993 40Ga0318542_106738462 41Ga0318574_101650681 42Ga0318574_106164471 43Ga0318574_109534471 44Ga0318572_100626991 45Ga0318572_104711562 46Ga0318560_104859172 47Ga0306917_103954841 48Ga0306917_104203751 49Ga0318493_101070141 50Ga0318500_107160581 51Ga0306918_107023661 52Ga0306918_114840031 53Ga0318492_102109732 54Ga0318535_103715261 55Ga0318526_102040631 56Ga0318521_104749931 57Ga0318543_103000072 58Ga0318547_101284083 59Ga0318547_104767771 60Ga0318529_103466431 61Ga0318576_101222741 62Ga0318565_106505942 63Ga0310917_101218661 64Ga0310917_101827941 65Ga0310917_103651762 66Ga0318511_102318961 67Ga0318495_100344981 68Ga0306925_103515851 69Ga0306925_110646391 70Ga0306925_119130041 71Ga0318536_102419072 72Ga0306923_112724961 73Ga0306923_121496471 74Ga0306923_124033911 75Ga0306921_104059483 76Ga0306921_118148521 77Ga0306921_125820201 78Ga0310916_107318491 79Ga0310916_110102002 80Ga0310916_110568702 81Ga0310916_111449492 82Ga0310913_100115941 83Ga0310913_107509281 84Ga0310913_113090192 85Ga0310910_103798102 86Ga0310910_104968242 87Ga0310909_100852672 88Ga0310909_101843781 89Ga0310909_107694531 90Ga0310909_110501791 91Ga0310909_115257551 92Ga0306926_101871042 93Ga0306926_106234361 94Ga0306926_119902362 95Ga0306922_114753471 96Ga0310911_107973013 97Ga0318549_101916882 98Ga0318505_100446603 99Ga0318514_101699541 100Ga0306924_104196713 101Ga0306924_108048222 102Ga0306924_111014851 103Ga0306924_116556851 104Ga0318577_104913103 105Ga0306920_1018085832 106Ga0310914_115805302 107Ga0318519_100210412 108Ga0318519_100311475 109Ga0318519_107301552
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066903_1017495233 2Ga0066903_1051860861 3Ga0182037_110512482 4Ga0318574_101650681 5Ga0318547_101284083 6Ga0318576_101222741 7Ga0310917_103651762 8Ga0306923_124033911 9Ga0306920_1018085832
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066903_1017495233 2Ga0066903_1051860861 3Ga0182037_110512482 4Ga0318574_101650681 5Ga0318547_101284083 6Ga0318576_101222741 7Ga0310917_103651762 8Ga0306923_124033911 9Ga0306920_1018085832
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.69% β-sheet: 0.00% Coil/Unstructured: 29.31%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13417	GST_N_3	8.26
PF00239	Resolvase	5.50
PF00476	DNA_pol_A	2.75
PF03734	YkuD	1.83
PF06048	DUF927	1.83
PF01964	ThiC_Rad_SAM	0.92
PF13545	HTH_Crp_2	0.92
PF00027	cNMP_binding	0.92
PF08240	ADH_N	0.92
PF04392	ABC_sub_bind	0.92

Showing 1 to 10 of 14 entries

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COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	5.50
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	5.50
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	2.75
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.83
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.83
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	1.83
COG0422	4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC	Coenzyme transport and metabolism [H]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	33.94 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	33.94 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.94 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.94 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.10 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.43 %
Unclassified	root	N/A	66.06 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.68 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.92 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.92 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.01 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.92 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.92 %
Unclassified	root	N/A	66.06 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.92 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.92 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.92 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.92 %
Unclassified	root	N/A	66.06 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.92 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.92 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.92 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.92 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.92 %
Unclassified	root	N/A	66.06 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005764\|Ga0066903_101749523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1185	Open in IMG/M
3300005764\|Ga0066903_105186086	Not Available	690	Open in IMG/M
3300005764\|Ga0066903_105342896	Not Available	679	Open in IMG/M
3300005764\|Ga0066903_107894528	Not Available	547	Open in IMG/M
3300005764\|Ga0066903_107923401	Not Available	545	Open in IMG/M
3300005764\|Ga0066903_108582500	Not Available	520	Open in IMG/M
3300016270\|Ga0182036_11132762	Not Available	649	Open in IMG/M
3300016270\|Ga0182036_11201134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	631	Open in IMG/M
3300016270\|Ga0182036_11713789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	531	Open in IMG/M
3300016294\|Ga0182041_10422936	Not Available	1139	Open in IMG/M

Showing 1 to 10 of 108 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	88.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M

Showing 1 to 10 of 62 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066903_1017495233	3300005764	Tropical Forest Soil	MIDTEQLDRLAETFSTQADYCRHMAEEPDGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0066903_1051860861	3300005764	Tropical Forest Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLEAAWTKLAEETKARSRGSRPS*
Ga0066903_1053428962	3300005764	Tropical Forest Soil	MNQMDADRFDELAETYSTQANHCRREAEGPLDPWALLAVAWTKLAEETKARSRGSRPS*
Ga0066903_1078945282	3300005764	Tropical Forest Soil	MTDTDHFDRLAETCSTQADYCHHIAEERGGAFDQPWVLLAAAWTELAEETKSRSCGSRAS
Ga0066903_1079234012	3300005764	Tropical Forest Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0066903_1085825002	3300005764	Tropical Forest Soil	MTDTDDFDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0182036_111327622	3300016270	Soil	GCLWDTSVMNQIDADRFDELAETYSTQADHCRRGAEGPLDPWALLAAAWTKLAEETKARGPGSRPS
Ga0182036_112011341	3300016270	Soil	RLDERAERYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGSRPS
Ga0182036_117137891	3300016270	Soil	MIDTEQLGRLAETYSTQADYCRHMAEEPDGAFDELWVLLATAWTELAEETKARS
Ga0182041_104229361	3300016294	Soil	RFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0182041_120526731	3300016294	Soil	RFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARGPGSRPS
Ga0182033_118826922	3300016319	Soil	GCLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0182035_106249571	3300016341	Soil	FDELAETYSTQADHCRREAEGPLDPWALLAVARTKLAEETKARSRGSRSS
Ga0182035_114751681	3300016341	Soil	MNQIDADRLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGLRP
Ga0182032_102831932	3300016357	Soil	MTETEQPDRLAQTYSTQADYCRHMAEEPGGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0182034_103542321	3300016371	Soil	KAGGGCLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARAPGSRPS
Ga0182034_118241852	3300016371	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTELAEETKARSRGLRPN
Ga0182040_109215261	3300016387	Soil	MTDTEHFDSLAETYSTQADYCRHMAEEPDGAFDELWVLLAAAWTELAEETKAR
Ga0182040_109837641	3300016387	Soil	RFDELAETYSTQADHCRREAEGPLDPWALLAVARTKLAEETKARSRGSRSS
Ga0182037_103114611	3300016404	Soil	MIDTEQLGRLAETYNTQADYCRHMAEEPDGAFDELWVLLASAWTELAEETKARSRESRPN
Ga0182037_110512482	3300016404	Soil	MNQIDADRLDERAETYSKQADYCRREAEGPLDPWMLLATAWTKLAEET
Ga0182037_111378483	3300016404	Soil	FDELAETYNTQADHCRREAEGPLDPWALLAVAWTKLAEETKARSRGSQPS
Ga0182037_121624182	3300016404	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRG
Ga0126371_124862911	3300021560	Tropical Forest Soil	MTDADQFDRLAETYSTQANYCRHMAEGAGAAFDEPWALLAAAWTELAEETKARSRGSQPN
Ga0126371_127356021	3300021560	Tropical Forest Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0207837_10234852	3300026876	Tropical Forest Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWAKLAEETKARSRGSRPS
Ga0207781_10273662	3300026890	Tropical Forest Soil	MNQIDADRFDELAETYSTQADQCRREAEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0207776_10381512	3300027035	Tropical Forest Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRPAARP
Ga0207826_10214243	3300027680	Tropical Forest Soil	TSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAAR
Ga0207862_11412502	3300027703	Tropical Forest Soil	GCLSDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0318516_100204174	3300031543	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPN
Ga0318534_103523481	3300031544	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAEE
Ga0318534_104436781	3300031544	Soil	MTETEQPDRLAETYSTQADYCRHMAEEPGGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0318541_104294633	3300031545	Soil	IDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0318538_107009781	3300031546	Soil	LAETFSTQADYCRHMAEEPDGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0318571_103034302	3300031549	Soil	TMTETDDFDTLAETYSTQADYCRHMAEEPSGAFDEPWMLLAAAWTELAEETKARSRGSQP
Ga0318573_108142502	3300031564	Soil	TDTEHFDSLAETYSTQADYCRHMAEEPDGAFDELWVLLASAWTELAEETKARSRESRPN
Ga0318515_101954262	3300031572	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWMLLATAWTKLAEETKVRSRLAARP
Ga0310915_106013993	3300031573	Soil	SLAETYSTQADYCRHMAEEPDGAFDELWVLLASAWTELAEETKARSRESRPN
Ga0318542_106738462	3300031668	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARGPGSRPS
Ga0318574_101650681	3300031680	Soil	DLKAGGGCLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0318574_106164471	3300031680	Soil	MNQIDADRLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGLRPN
Ga0318574_109534471	3300031680	Soil	MTDTEQLDRLAETYSTQADYCRHMAEESDGAFDESWVLLAAAWTELAEE
Ga0318572_100626991	3300031681	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRP
Ga0318572_104711562	3300031681	Soil	EQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0318560_104859172	3300031682	Soil	MIDTEQLGRLAETYSTQADYCRHMAEEPDGAFDELWVLLATAWTELAEETK
Ga0306917_103954841	3300031719	Soil	MTDTDHFDRLAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0306917_104203751	3300031719	Soil	FDWLAETYSTQADYCRHMAEEPGGAFDEPWVLLAVAWTELAEETKARSRASRPS
Ga0318493_101070141	3300031723	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETK
Ga0318500_107160581	3300031724	Soil	MNQIDADRFDELAETYSTQADYCRHEAEGPLDPWMLLATAWTKLADETKARSGIAA
Ga0306918_107023661	3300031744	Soil	MTDADHFDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0306918_114840031	3300031744	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0318492_102109732	3300031748	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAVAWTKLAEETKARSRGSQPSR
Ga0318535_103715261	3300031764	Soil	LWDTSAMNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPN
Ga0318526_102040631	3300031769	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSR
Ga0318521_104749931	3300031770	Soil	MIDTEQLGRLAETYSTQADYCRHMAEEPDGAFDELWVLLATAWTELAEETKARSRGSRPN
Ga0318543_103000072	3300031777	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0318547_101284083	3300031781	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELA
Ga0318547_104767771	3300031781	Soil	MTDTEHFDSLAETYSTQADYCRHMAEEPDGAFDELWVLLASAWTELAEETKARSRESRPN
Ga0318529_103466431	3300031792	Soil	LAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPN
Ga0318576_101222741	3300031796	Soil	TYSTQADYCRHMAEEPGGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0318565_106505942	3300031799	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWMLLATAWTKLAEETKGKVPDRGRVDD
Ga0310917_101218661	3300031833	Soil	RVKAGGGCLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0310917_101827941	3300031833	Soil	MNQIDADRLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGL
Ga0310917_103651762	3300031833	Soil	DERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGLRPN
Ga0318511_102318961	3300031845	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRSS
Ga0318495_100344981	3300031860	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAEETKARS
Ga0306925_103515851	3300031890	Soil	AGGGCLSDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0306925_110646391	3300031890	Soil	MIDTEQLGRLAETYNTQADYCRHMAEEPDGAFDELWVLLAAAWTELAEETKARSRGSRPN
Ga0306925_119130041	3300031890	Soil	MNQIDADRLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGSRPS
Ga0318536_102419072	3300031893	Soil	FDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPN
Ga0306923_112724961	3300031910	Soil	ELAETYRTQADHCRREAEGPLDPWALLAVAWTKLAEETKAWGPGSRPS
Ga0306923_121496471	3300031910	Soil	CLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0306923_124033911	3300031910	Soil	MTDTDHFDRLAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETK
Ga0306921_104059483	3300031912	Soil	GGCLWDTSVMNQIDADRFDELAETYRTQADHCRREAEGPLDPWALLAVAWTKLAEETKAWGPGSRPS
Ga0306921_118148521	3300031912	Soil	GGCLWDTSVMNQIDADRFDELAETYSTQADHCRREGEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0306921_125820201	3300031912	Soil	MNQIYADRFDELAETYSTLADYCRGEAEGPLDPWMLLATAWTKLAEETEA
Ga0310916_107318491	3300031942	Soil	ETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0310916_110102002	3300031942	Soil	FDELAETYSTQADQCRREAEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0310916_110568702	3300031942	Soil	MIDTEQLGRLAETYNTQADYCRHMAEEPDGAFDELWVLLAAAWTELAEETKAR
Ga0310916_111449492	3300031942	Soil	MTDTDDFDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAAWTELAEETKARSRGSRPS
Ga0310913_100115941	3300031945	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAGWTKLAEETKARSRG
Ga0310913_107509281	3300031945	Soil	TSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARGPGSRP
Ga0310913_113090192	3300031945	Soil	TSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRP
Ga0310910_103798102	3300031946	Soil	FDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0310910_104968242	3300031946	Soil	MTDTDDFDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAVAWTELAEETKARSRASRPS
Ga0310909_100852672	3300031947	Soil	MNQIDAGRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSGGSRPN
Ga0310909_101843781	3300031947	Soil	RLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETKARSRGSRPS
Ga0310909_107694531	3300031947	Soil	EQPDRLAETYSTQADYCRHMAEEPGGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0310909_110501791	3300031947	Soil	FAIGLKMIDTEQLGRLAETYNTQADYCRHMAEEPDGAFDELWVLLAAAWTELAEETKARSRGSRPN
Ga0310909_115257551	3300031947	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAEETKARSRGSRPS
Ga0306926_101871042	3300031954	Soil	MNQIDADRLDERAETYSTQADYCRREAEGPLDPWALLAAAWTELAEETRARSRGLRPN
Ga0306926_106234361	3300031954	Soil	MNQIDADRFDELAETYRTQADHCRREAEGPLDPWALLAVAWTKLAEETKAWGPGSRPS
Ga0306926_119902362	3300031954	Soil	MTDTDDFDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAVAWTELAEEIKARSRASRPS
Ga0306922_114753471	3300032001	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPGGAFDEPWVLLAVAWTELAEETKARSRASRPS
Ga0310911_107973013	3300032035	Soil	DADRFDELAETYSTQADHCRREGEGPLDPWALLAAAWTKLAEETKARSRLT
Ga0318549_101916882	3300032041	Soil	VMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0318505_100446603	3300032060	Soil	FDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARGPGSRPS
Ga0318514_101699541	3300032066	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWMLLATAWTKLAEETKARSGIAAELTIIV
Ga0306924_104196713	3300032076	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWMLLATAWTKLAEETKARSGIAA
Ga0306924_108048222	3300032076	Soil	KMIDTEQLGRLAETYNTQADYCRHMAEEPDGAFDELWVLLAAAWTELAEETKARSRGSRP
Ga0306924_111014851	3300032076	Soil	KSWRGCLWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKVRSRLAARP
Ga0306924_116556851	3300032076	Soil	LWDTSVMNQIDADRFDELAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRL
Ga0318577_104913103	3300032091	Soil	EQLDRLAETYSTQADYCRHMAEEPGGAFDESWVLLAAAWTELAEETKARSRGSRPN
Ga0306920_1018085832	3300032261	Soil	MKQINAVRLDELAEAYSTQADYCRGMAEESGGTFDEPWVLLAAAWTKLAEETKARSRIAAGLTIF
Ga0310914_115805302	3300033289	Soil	TDHFDRLAETYSTQADHCRREAEGPLDPWALLAAAWTKLAEETKARSRGSRPS
Ga0318519_100210412	3300033290	Soil	MNQIDAGRFDELAETYSTQADHCRREAEEPLDPWALLAAAWTKLAEETKARSRGSRPN
Ga0318519_100311475	3300033290	Soil	MTDTEQLDRLAETYSTQADYCRHMAEEPDGAFDEPWVLLAAAWTELAE
Ga0318519_107301552	3300033290	Soil	MNQIDADRFDELAETYSTQADHCRREAEGPLDPWMLLATAWTKLAEETKARSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087995

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences