Metagenome / Metatranscriptome Family F087894

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087894
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MDFILVMVICSVISGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCKEAPKVST
Number of Associated Samples	66
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.86 %
% of genes near scaffold ends (potentially truncated)	0.91 %
% of genes from short scaffolds (< 2000 bps)	0.91 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (97.273 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (48.182 % of family members)
Environment Ontology (ENVO)	Unclassified (86.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.727 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1DelMOSum2010_100013617 2DelMOSum2010_1000912815 3DelMOSum2010_101611603 4DelMOSum2011_1001205410 5DelMOSum2011_101448681 6DelMOSpr2010_100317935 7DelMOSpr2010_100722964 8DelMOWin2010_100822892 9JGI24006J15134_100952024 10JGI24006J15134_101705941 11JGI24006J15134_101705953 12JGI24006J15134_101870622 13JGI24003J15210_100668035 14JGI24003J15210_100721196 15JGI24003J15210_100937742 16JGI24003J15210_101215254 17JGI24003J15210_101268302 18JGI24003J15210_101673171 19JGI24004J15324_100615793 20JGI24005J15628_100885624 21JGI24005J15628_101076632 22JGI24005J15628_101398293 23JGI24005J15628_102214422 24JGI24927J35514_10152502 25Ga0065861_10054311 26Ga0065861_10532172 27Ga0073579_10280722 28Ga0073579_10763182 29Ga0075466_10691343 30Ga0075466_11717881 31Ga0070750_100251626 32Ga0070750_103958392 33Ga0070746_103441202 34Ga0070748_11734601 35Ga0070747_11002734 36Ga0115566_107650002 37Ga0114995_100972421 38Ga0114995_105413642 39Ga0114994_101820361 40Ga0114998_100690216 41Ga0114998_101460061 42Ga0114998_103655102 43Ga0114997_103850731 44Ga0115008_104374573 45Ga0115007_104784834 46Ga0115564_103166133 47Ga0115104_104405243 48Ga0115001_100982682 49Ga0115001_108261602 50Ga0181403_10014235 51Ga0181412_10449074 52Ga0181404_10862532 53Ga0181390_10448953 54Ga0181381_10700262 55Ga0181399_10086961 56Ga0181427_10373932 57Ga0181427_11268773 58Ga0181393_10615004 59Ga0187219_12230532 60Ga0181411_11173183 61Ga0181409_11928862 62Ga0181425_12129963 63Ga0181423_10827982 64Ga0211678_101577111 65Ga0211687_101439983 66Ga0224906_10487762 67Ga0224906_10878081 68Ga0207905_10063844 69Ga0207905_10075064 70Ga0207896_10331912 71Ga0207890_10470824 72Ga0207890_10599273 73Ga0209535_100394115 74Ga0209535_10298017 75Ga0209535_10458255 76Ga0209535_10509342 77Ga0209535_11777152 78Ga0209535_11835012 79Ga0209535_12152222 80Ga0209535_12181121 81Ga0209336_100951031 82Ga0209336_101151142 83Ga0209336_101677281 84Ga0209634_10137398 85Ga0209634_10999721 86Ga0209634_12289162 87Ga0209337_10632347 88Ga0208148_10138542 89Ga0208303_10610042 90Ga0209194_10496984 91Ga0208899_100200816 92Ga0208899_10267202 93Ga0208767_10014909 94Ga0209199_10913333 95Ga0208941_10524712 96Ga0209710_11641933 97Ga0209192_100520343 98Ga0209192_101109715 99Ga0209709_100564092 100Ga0209711_101916172 101Ga0209830_101849431 102Ga0209092_102038093 103Ga0256368_10269633 104Ga0256368_10854711 105Ga0307488_102901611 106Ga0307488_103027591 107Ga0307488_103546673 108Ga0316202_103583982 109Ga0314858_009788_1668_1889 110Ga0314858_088340_536_757
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1DelMOSum2010_100013617 2JGI24006J15134_101705941 3Ga0114998_100690216 4Ga0187219_12230532
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1DelMOSum2010_100013617 2JGI24006J15134_101705941 3Ga0114998_100690216 4Ga0187219_12230532
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.73% β-sheet: 10.96% Coil/Unstructured: 49.32%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08291	Peptidase_M15_3	20.91
PF00959	Phage_lysozyme	3.64
PF11753	DUF3310	1.82
PF00145	DNA_methylase	0.91
PF00589	Phage_integrase	0.91

Showing 1 to 5 of 5 entries

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COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	2.73 %
Unclassified	root	N/A	97.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.73 %
Unclassified	root	N/A	97.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.73 %
Unclassified	root	N/A	97.27 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10001361	Not Available	19714	Open in IMG/M
3300000101\|DelMOSum2010_c10009128	All Organisms → cellular organisms → Bacteria	6542	Open in IMG/M
3300009505\|Ga0115564_10316613	Not Available	778	Open in IMG/M
3300017710\|Ga0181403_1001423	Not Available	5652	Open in IMG/M
3300025120\|Ga0209535_1003941	Not Available	9362	Open in IMG/M
3300025759\|Ga0208899_1002008	All Organisms → cellular organisms → Bacteria	13979	Open in IMG/M
3300025769\|Ga0208767_1001490	All Organisms → cellular organisms → Bacteria	18598	Open in IMG/M

Showing 1 to 7 of 7 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	20.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.82%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	7.27%
Oceanic	Environmental → Aquatic → Marine → Oceanic	50.00%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.64%
Strait	Environmental → Aquatic → Marine → Strait	14.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.73%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.09%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	14.55%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.91%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	48.18%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	7.27%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.73%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.82%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.82%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.82%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.91%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.64%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	2.73%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	3.64%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	14.55%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300002524	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M

Showing 1 to 10 of 66 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100013617	3300000101	Marine	MDFILIMVICSTIEGNKCQQVPLPLDNFQDHYDCVSFGYDFSHKMISGMSREFVNKQGAYMKFVCEETVKVNT*
DelMOSum2010_1000912815	3300000101	Marine	MDFVLVMFICSVIEGNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT*
DelMOSum2010_101611603	3300000101	Marine	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCKEAPKVST*
DelMOSum2011_1001205410	3300000115	Marine	MVICSTIEGNKCQQVPLPLDNFKDHYDCVSFGYDFSHSMITNMSREFVNKQGAYMKFVCEKTLKVST*
DelMOSum2011_101448681	3300000115	Marine	MDFILIMVICSAIDGNKCQPIPLPLDNFKDHFDCVSFGYDFSHKMITNMSREFVNTQGAYMQFVXKEAPKVST*
DelMOSpr2010_100317935	3300000116	Marine	MDFVLVMFICSVIDINKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT*
DelMOSpr2010_100722964	3300000116	Marine	MDFILIMVICSAIDGNKCQPIPLPLDNFKDHFDCVSFGYDFSHKMITNMSREFVNTQGAYMQFVCKETPKVTT*
DelMOWin2010_100822892	3300000117	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCKEAPKVST*
JGI24006J15134_100952024	3300001450	Marine	MDFILVMVICSTIEGNKCQQIPLPLDNFQDHYDCVSFGYDFSHKMISGMSREFVNKQGAYMKFVCEETVKVNT*
JGI24006J15134_101705941	3300001450	Marine	MFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVST*
JGI24006J15134_101705953	3300001450	Marine	MFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVNT*
JGI24006J15134_101870622	3300001450	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVST*
JGI24003J15210_100668035	3300001460	Marine	MNFVLVMFICSVIEGNKCHQVPLPLDNFKDHYDCVSFGYDFSYKMITNLSREFVNKQGAYIKFFCEEAPKVST*
JGI24003J15210_100721196	3300001460	Marine	SAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETPKVNT*
JGI24003J15210_100937742	3300001460	Marine	MDFILVMFIXSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVST*
JGI24003J15210_101215254	3300001460	Marine	CSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVNT*
JGI24003J15210_101268302	3300001460	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMRFVCEETVKVST*
JGI24003J15210_101673171	3300001460	Marine	MNFVLVMFICSVIEGNKCHQVPLPLDNFKDHYDCVSFSYDFSHKMITNLSREFVNKQGAYIKFFCEEAPKV
JGI24004J15324_100615793	3300001472	Marine	MDFILIMVICSAIDNNKCHKVTLPLDNFQDHYDCVSFGYDFSHKIISNMSREFVNKQGAYIKFVCEEAPKVNT*
JGI24005J15628_100885624	3300001589	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFVCEETPKVST*
JGI24005J15628_101076632	3300001589	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVST*
JGI24005J15628_101398293	3300001589	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHSMITNMSREFVNKQGAYIKFVCEEAPK
JGI24005J15628_102214422	3300001589	Marine	CSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETPKVNT*
JGI24927J35514_10152502	3300002524	Marine	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKVST*
Ga0065861_10054311	3300004448	Marine	MVICSIIDGNKCQQIPLPLDNFQDHYDCVSFAYDFSHKMITNMSREFVNKQGAYIKFVCEETPKVNT*
Ga0065861_10532172	3300004448	Marine	MDFVLVMFICSVIDINKCHQIPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVNT*
Ga0073579_10280722	3300005239	Marine	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFINKQGAYMQFVCKEAPKVTT*
Ga0073579_10763182	3300005239	Marine	MDFILVMFICSVIEGNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT*
Ga0075466_10691343	3300006029	Aqueous	MDFILIMVICSAIDGNKCQPIPLPLDNFKDHFDCVSFGYDFSHKMITNMSREFVNTQGAYMQFVCKEAPKVST*
Ga0075466_11717881	3300006029	Aqueous	MDFILIMVICSTIEGNKCQPVPLPLDNFKDHYDCVSFAYDFSHKMISNMSKEFVNTQGAYTQFICKEAPKVST*
Ga0070750_100251626	3300006916	Aqueous	MDFVLVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT*
Ga0070750_103958392	3300006916	Aqueous	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKETPKVTT*
Ga0070746_103441202	3300006919	Aqueous	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFAYDFSHKMISNMSKEFVNTQGAYTQFICKEAPKVST*
Ga0070748_11734601	3300006920	Aqueous	ICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCKEAPKVST*
Ga0070747_11002734	3300007276	Aqueous	MDFILIMVICSTIEGNKCQQVPLPLDNFQDHYDCVSFGYDFSHKMISGMSREFVNKQGAYMQFVCKEAPKVST*
Ga0115566_107650002	3300009071	Pelagic Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFVNKQGAYMRFVCEETVKVST*
Ga0114995_100972421	3300009172	Marine	MDFVLVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYINFVCKETSKVST*
Ga0114995_105413642	3300009172	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEEAPKVST*
Ga0114994_101820361	3300009420	Marine	MDFVLVMFICSVIEGNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNKQGAYIKFFCEEAPKVST*
Ga0114998_100690216	3300009422	Marine	VMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEEAPKVST*
Ga0114998_101460061	3300009422	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEESPKVST*
Ga0114998_103655102	3300009422	Marine	MDFILVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYINFVCKETSKVST*
Ga0114997_103850731	3300009425	Marine	MDFILVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHSMITNLSREFVNKQGAYINFVCKESPKVST*
Ga0115008_104374573	3300009436	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMKFVCEETLKVST*
Ga0115007_104784834	3300009441	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYINFVCKETSKVST*
Ga0115564_103166133	3300009505	Pelagic Marine	MDFILVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHSMITNLSREFVNKQGAYINFVCKEAPKVST*
Ga0115104_104405243	3300009677	Marine	LMDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVST*
Ga0115001_100982682	3300009785	Marine	MDFVLVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNNQGAYINFVCKEAPKVST*
Ga0115001_108261602	3300009785	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEE
Ga0181403_10014235	3300017710	Seawater	MDFILVMVICSVISGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCKEAPKVST
Ga0181412_10449074	3300017714	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEVPKVST
Ga0181404_10862532	3300017717	Seawater	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCKEAPKVST
Ga0181390_10448953	3300017719	Seawater	MDFILIMVICSAIDGNKCQPVPLPLDNFQDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKVST
Ga0181381_10700262	3300017726	Seawater	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCKESPKVST
Ga0181399_10086961	3300017742	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKV
Ga0181427_10373932	3300017745	Seawater	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNSQGAYMQFVCKEAPKVST
Ga0181427_11268773	3300017745	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYHFSHKMISNMSREFINSQGAYMQFVCKEAPKVST
Ga0181393_10615004	3300017748	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVNT
Ga0187219_12230532	3300017751	Seawater	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHFYCVSFGYDFSHKMISNMSREFVNTQGAY
Ga0181411_11173183	3300017755	Seawater	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHYDCVTFSYDYAHKMISNMSKEFVNSQGAYIQFVCKEAPKVST
Ga0181409_11928862	3300017758	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFICKEAPKVIT
Ga0181425_12129963	3300017771	Seawater	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKE
Ga0181423_10827982	3300017781	Seawater	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNAQGAYMQFVCKEAPKVST
Ga0211678_101577111	3300020388	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVST
Ga0211687_101439983	3300020396	Marine	MDFILVMFICSAIEGNKCQPVPLPIDNFKDHFDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETPKVNT
Ga0224906_10487762	3300022074	Seawater	MVICSAIDGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKVST
Ga0224906_10878081	3300022074	Seawater	MDFVLVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMKFVCEEIPKVNT
Ga0207905_10063844	3300025048	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVNT
Ga0207905_10075064	3300025048	Marine	MDFILVMVICSTIEGNKCQQIPLPLDNFQDHYDCVSFGYDFSHKMISGMSREFVNKQGAYMKFVCEETVKVNT
Ga0207896_10331912	3300025071	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFVCEETPKVST
Ga0207890_10470824	3300025079	Marine	GNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVNT
Ga0207890_10599273	3300025079	Marine	VMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETQKVNT
Ga0209535_100394115	3300025120	Marine	MDFILVMVICSVVSGNKCQPVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMQFVCK
Ga0209535_10298017	3300025120	Marine	MDFVLVMFICSVIEGKKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNKQGAYIKFFCEEAPKVST
Ga0209535_10458255	3300025120	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMRFVCEETVKVST
Ga0209535_10509342	3300025120	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETPKVNT
Ga0209535_11777152	3300025120	Marine	MDFILIMVICSTIEGNKCQQVPLPLDNFQDHYDCVSFGYDFSHSMISGMSREFVNKQGAYMKFVCEETVKVNT
Ga0209535_11835012	3300025120	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFVCEETVKVNT
Ga0209535_12152222	3300025120	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETSKVNT
Ga0209535_12181121	3300025120	Marine	CSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVNT
Ga0209336_100951031	3300025137	Marine	ILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEAPKVTT
Ga0209336_101151142	3300025137	Marine	MDFFLVMVICSIIDGNKCQQISLPLDNFQDHYDCVSFAYDFSHSMISNMSREFVNKQGAYIKFVCEEIPKVNT
Ga0209336_101677281	3300025137	Marine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHSMITNMSREFVNKQGAYIKFVCEEAPKVST
Ga0209634_10137398	3300025138	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETPKVST
Ga0209634_10999721	3300025138	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKEA
Ga0209634_12289162	3300025138	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCTETQKVNT
Ga0209337_10632347	3300025168	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQ
Ga0208148_10138542	3300025508	Aqueous	MDFILIMVICSAIDGNKCQPIPLPLDNFKDHFDCVSFGYDFSHKMITNMSREFVNTQGAYMQFVCKEAPKVST
Ga0208303_10610042	3300025543	Aqueous	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINSQGAYMQFVCKETPKVTT
Ga0209194_10496984	3300025632	Pelagic Marine	MDFILIMVICSAIDGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKVST
Ga0208899_100200816	3300025759	Aqueous	MFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT
Ga0208899_10267202	3300025759	Aqueous	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCKEAPKVST
Ga0208767_10014909	3300025769	Aqueous	MDFVLVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT
Ga0209199_10913333	3300025809	Pelagic Marine	MDFILVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHSMITNMSREFVNKQGAYIKFFCEEAPKVST
Ga0208941_10524712	3300027077	Marine	MDFILVMFICSAIEGNKCQPVPLPLDNFKDHFDCVSFGYDFSHKMISNMSREFVNTQGAYMQFVCKEAPKVST
Ga0209710_11641933	3300027687	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEESPKVST
Ga0209192_100520343	3300027752	Marine	MDFVLVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYINFVCKETSKVST
Ga0209192_101109715	3300027752	Marine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIKFFCEEAPKVST
Ga0209709_100564092	3300027779	Marine	MDFILVMVICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYINFVCKETSKVST
Ga0209711_101916172	3300027788	Marine	MDFILVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAYIQFVCKEDSKVST
Ga0209830_101849431	3300027791	Marine	MDFVLVMFICSVIDINKCHQVPLPLDNFQDHYDCVSFGYDFSHKMITNLSREFVNKQGAY
Ga0209092_102038093	3300027833	Marine	MDFILIMVICSTIEGNKCQQVPLPLDNFQDHYDCVSFGYDFSHKMISNMSREFVNKQGAYMKFVCEETVKVST
Ga0256368_10269633	3300028125	Sea-Ice Brine	MDFVLVMFICSVIENNKCHQVPLPLDNFQDHYDCVSFGYDFSHSMITNLSREFVNKQGAYINFVCKEAPKVST
Ga0256368_10854711	3300028125	Sea-Ice Brine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGAYIK
Ga0307488_102901611	3300031519	Sackhole Brine	MDFILVMFICSVIENNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNKQGAYIKFFCEEAPKVST
Ga0307488_103027591	3300031519	Sackhole Brine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFAYDFSHSMITNMSREFVNKQGA
Ga0307488_103546673	3300031519	Sackhole Brine	MDFILVMVICSVIDGNKCQQVPLPLDNFKDHYDCVSFGYDFSHSMITNMSREFVNKQGAYIKFVCEEAPKVKT
Ga0316202_103583982	3300032277	Microbial Mat	MDFVLVMFICSVIDINKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNNQGAYIKFFCEETPKVKT
Ga0314858_009788_1668_1889	3300033742	Sea-Ice Brine	MDFILVMFICSAIEGNKCQPVSLPLDNFKDHYDCAVFGYDFSHKMISNMSREFINTQGAYMQFVCTETPKVNT
Ga0314858_088340_536_757	3300033742	Sea-Ice Brine	MDFILVMVICSVIESNKCHQVPLPLDNFKDHYDCVSFGYDFSHKMITNLSREFVNKQGAYIKFFCEEAPKVST

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087894

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences