Metagenome / Metatranscriptome Family F087870

Basic Information
Family ID	F087870
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	LGDRRGIETLLRNGQGQMPSVGKDWTDKQIDALVAYTKQFAKAGG
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	93.64 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (73.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.364 % of family members)
Environment Ontology (ENVO)	Unclassified (28.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.36% β-sheet: 0.00% Coil/Unstructured: 61.64%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00115	COX1	96.36
PF02823	ATP-synt_DE_N	0.91
PF01266	DAO	0.91
PF01040	UbiA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.27 %
Unclassified	root	N/A	26.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.27 %
Unclassified	root	N/A	26.36 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.91 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.91 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Burkholderia pseudomultivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pseudomultivorans	0.91 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig50031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
2170459005\|F1BAP7Q02H4WX5	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300001534\|A15PFW1_10363004	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300002568\|C688J35102_117697768	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300002568\|C688J35102_119697196	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300002568\|C688J35102_120111887	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300004479\|Ga0062595_100690631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	817	Open in IMG/M
3300004800\|Ga0058861_11754536	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005327\|Ga0070658_10220226	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300005327\|Ga0070658_10933812	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005332\|Ga0066388_106991862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300005336\|Ga0070680_100527032	Not Available	1012	Open in IMG/M
3300005337\|Ga0070682_100591138	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300005437\|Ga0070710_11493804	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005439\|Ga0070711_100780754	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005530\|Ga0070679_100217683	Not Available	1872	Open in IMG/M
3300005534\|Ga0070735_10182576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1290	Open in IMG/M
3300005535\|Ga0070684_101126036	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005549\|Ga0070704_102158987	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005577\|Ga0068857_100059121	All Organisms → cellular organisms → Bacteria	3404	Open in IMG/M
3300005577\|Ga0068857_101102035	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005614\|Ga0068856_101336473	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300005616\|Ga0068852_101218712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300005949\|Ga0066791_10113076	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009545\|Ga0105237_10674060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300009551\|Ga0105238_11066214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300010152\|Ga0126318_10494000	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300010152\|Ga0126318_10696404	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300010360\|Ga0126372_10416543	Not Available	1232	Open in IMG/M
3300010376\|Ga0126381_104586112	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012019\|Ga0120139_1198872	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300012363\|Ga0137390_11121760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300012493\|Ga0157355_1007058	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012515\|Ga0157338_1062211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300012927\|Ga0137416_10570572	Not Available	982	Open in IMG/M
3300012957\|Ga0164303_10980062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600	Open in IMG/M
3300012958\|Ga0164299_10149333	Not Available	1291	Open in IMG/M
3300012958\|Ga0164299_11179541	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012960\|Ga0164301_10366261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	996	Open in IMG/M
3300012961\|Ga0164302_10075754	Not Available	1774	Open in IMG/M
3300012982\|Ga0168317_1067752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300012987\|Ga0164307_11616471	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012988\|Ga0164306_10424193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300012988\|Ga0164306_10662388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300012988\|Ga0164306_10789843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300012989\|Ga0164305_10372684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300012989\|Ga0164305_10802917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300013104\|Ga0157370_11370200	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300013105\|Ga0157369_11056921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300013501\|Ga0120154_1141831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	543	Open in IMG/M
3300014031\|Ga0120173_1048709	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300014498\|Ga0182019_10897131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300015357\|Ga0134072_10210449	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300015373\|Ga0132257_102079984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300016319\|Ga0182033_10653422	Not Available	917	Open in IMG/M
3300018073\|Ga0184624_10155739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pseudomultivorans	1006	Open in IMG/M
3300020077\|Ga0206351_10191448	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300020610\|Ga0154015_1360233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	745	Open in IMG/M
3300021363\|Ga0193699_10132911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1018	Open in IMG/M
3300021968\|Ga0193698_1053779	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300022467\|Ga0224712_10222763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300024323\|Ga0247666_1019910	Not Available	1441	Open in IMG/M
3300025679\|Ga0207933_1222075	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300025703\|Ga0208357_1073113	Not Available	1063	Open in IMG/M
3300025912\|Ga0207707_10083698	All Organisms → cellular organisms → Bacteria	2786	Open in IMG/M
3300025912\|Ga0207707_11286457	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300025916\|Ga0207663_10345017	Not Available	1126	Open in IMG/M
3300025921\|Ga0207652_10139639	Not Available	2166	Open in IMG/M
3300025925\|Ga0207650_11922441	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300025932\|Ga0207690_10656889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	859	Open in IMG/M
3300025934\|Ga0207686_10132334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1712	Open in IMG/M
3300025934\|Ga0207686_10933357	Not Available	702	Open in IMG/M
3300026041\|Ga0207639_10487866	Not Available	1124	Open in IMG/M
3300026078\|Ga0207702_11530587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	660	Open in IMG/M
3300026324\|Ga0209470_1353393	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300027787\|Ga0209074_10205389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300027908\|Ga0209006_11330779	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300028710\|Ga0307322_10155718	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300028755\|Ga0307316_10076222	Not Available	1151	Open in IMG/M
3300028782\|Ga0307306_10187660	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300028792\|Ga0307504_10249812	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300028800\|Ga0265338_10727403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300028824\|Ga0307310_10744817	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300030114\|Ga0311333_10738539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M
3300030114\|Ga0311333_10896870	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300030294\|Ga0311349_10416836	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300030838\|Ga0311335_11260379	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300030997\|Ga0073997_11264586	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031231\|Ga0170824_125217911	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300031247\|Ga0265340_10559426	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031249\|Ga0265339_10585147	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031251\|Ga0265327_10142877	Not Available	1117	Open in IMG/M
3300031548\|Ga0307408_100451530	Not Available	1115	Open in IMG/M
3300031549\|Ga0318571_10126999	Not Available	861	Open in IMG/M
3300031712\|Ga0265342_10153611	Not Available	1276	Open in IMG/M
3300031769\|Ga0318526_10463427	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031821\|Ga0318567_10819849	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031893\|Ga0318536_10069919	Not Available	1725	Open in IMG/M
3300031894\|Ga0318522_10294046	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031938\|Ga0308175_100794921	Not Available	1034	Open in IMG/M
3300032066\|Ga0318514_10134168	Not Available	1276	Open in IMG/M
3300032126\|Ga0307415_100582799	Not Available	992	Open in IMG/M
3300032828\|Ga0335080_10203077	Not Available	2179	Open in IMG/M
3300032955\|Ga0335076_10094031	All Organisms → cellular organisms → Bacteria	2928	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.45%
Host-Associated	Host-Associated	24.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.73%
Plants	Host-Associated → Plants	23.64%
Aquatic	Environmental → Aquatic	2.73%
Human	Host-Associated → Human	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Peat	Environmental → Terrestrial → Peat	3.64%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Geologic	Environmental → Terrestrial → Geologic	0.91%
Digestive System	Host-Associated → Human → Digestive System	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	14.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Mine	Environmental → Terrestrial → Geologic → Mine	0.91%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.18%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.91%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.18%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300001534	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005949	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300014031	Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25M	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025703	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_00792080	2140918007	Soil	YVGPALAGNSLLGDRKGIETLLRTGRGLMPAVGKNWSSEQIDALIAWTKQYTKSSAK
E41_01423380	2170459005	Grass Soil	GIESLLRNGQGQMPPVGKNWTDHQIDALIAYTTQFAKKG
A15PFW1_103630042	3300001534	Permafrost	RKAIEVLLRGGQGQMPSVGRDWTSRQLDSLIAYTKQFATKGSNG*
C688J35102_1176977682	3300002568	Soil	YIGPELGGNALLGDRKGLERLLRNGQGQMPPVGRDWTDHQIDALVSYTKQFAGGGKG*
C688J35102_1196971961	3300002568	Soil	ADREGLETLVREGRGNMPAVGNTWTDDQIDALVAYTKRFATQGGGQSGGEG*
C688J35102_1201118871	3300002568	Soil	LGSRYIGPDLQGNPLLANRASIERLLRQGQGQMPAVGASWTDAQIDALVSYTKQFASKGGS*
Ga0062595_1006906312	3300004479	Soil	ERTGIETLLRNGQGQMPAVGRTWSGSQIDALISYTKQFAKTGG*
Ga0058861_117545362	3300004800	Host-Associated	IGGNPLLGDRRGIEVLLRHGQGQMPSVGKDWSDKQIDALVAYTKRYAKAGG*
Ga0070658_102202262	3300005327	Corn Rhizosphere	GPALSGNSLLGDRKGIETLLRNGRGQMPAVGKNWTGAQIDALIAWTKQYTKGGGK*
Ga0070658_109338121	3300005327	Corn Rhizosphere	PALGGNSLLADRKGIETLLRNGRGQMPAVGKSWTGAQIDALISWTKQYAKAGGS*
Ga0066388_1069918622	3300005332	Tropical Forest Soil	ALTVLLVNGRGQMPPVGRGWTRRQFVALVAYTKQFAKAGGG*
Ga0070680_1005270321	3300005336	Corn Rhizosphere	LGDRRGIETLLRNGQGQMPSVGKDWTDKQIDALVAYTKQFAKAGG*
Ga0070682_1005911381	3300005337	Corn Rhizosphere	AGNPLLGDAKGLSTLLRNGGTRMPAVGKNWTDAQIQALVSYTKQFSKQGGGG*
Ga0070710_114938042	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LDHAYIGPALGGNPLLSDVNGLTTLLRNGQGQMPAVGRNWTNAQIEALVAYTKHLPKGGGS*
Ga0070711_1007807542	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PALQGNALLGDRRGIETLLRNGRGNMPAVGNNWTDAQIDALISWTKRYASTGAAG*
Ga0070679_1002176832	3300005530	Corn Rhizosphere	GPALNGNPLLGDRKGIETLLRNGGVQMPPVGRDWSGKQIDALVAYTKRFAKVGG*
Ga0070735_101825762	3300005534	Surface Soil	RNGQGQMPAVGKNWTGAQIDALIAYTKQFTKAGS*
Ga0070684_1011260362	3300005535	Corn Rhizosphere	DKKGLTTLLRNGQGQMPSVGKNWSDAQIDALVAYTKRYAKAGG*
Ga0070704_1021589871	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PLGGNALLGNRQGIESLLREGRGMMPAVGKNWTDAQIDALISYTKQFTKSGGS*
Ga0068857_1000591215	3300005577	Corn Rhizosphere	DRKGMETLLRKGGIQMPSVGRDWSDKQIDALVAYTKRFAAAGG*
Ga0068857_1011020352	3300005577	Corn Rhizosphere	LDHPYIGPALAGNPLLGDAKGLSTLLRNGGTRMPAVGKNWTDAQIQALVSYTKQFSKQGGGG*
Ga0068856_1013364731	3300005614	Corn Rhizosphere	CHRLDHKYVGPALGGNPLLGDVKGISALLRNGGIMMPAVGKNWTDAQIEALIAYTKQYAKAAS*
Ga0068852_1012187122	3300005616	Corn Rhizosphere	DKKGLTTLLRSGQGQMPSVGKDWSDAQIDALVAYTKRYAKAGG*
Ga0066791_101130762	3300005949	Soil	LTTILRNGQGAMPPVGKNWTDGQIQALVGYTKQFAKAGGS*
Ga0105237_106740602	3300009545	Corn Rhizosphere	TTLLRNGQGQMPSVGKNWSDAQIDALVAYTKRYAKAGG*
Ga0105238_110662141	3300009551	Corn Rhizosphere	NPLLGQVHSLTTLLRNGQGNMPAVGRNWSQHQIQALVAYTKQFAKQG*
Ga0126318_104940002	3300010152	Soil	YIGPALGGNPLLHDRKGIEALLRKGQGQMPAVGRNWTPHQIDALVAYTKTLGSGS*
Ga0126318_106964041	3300010152	Soil	GNSLLADRNGIETLLRNGRGQMPAVGFNWTGKQIDALISYTKRFAKGGNG*
Ga0126372_104165431	3300010360	Tropical Forest Soil	KCHRLDKPFIGPALGGNPLLADPARITPLLRQGQGQMPAVGRNWTRAQIDALTSYTKQFAKAGG*
Ga0126381_1045861121	3300010376	Tropical Forest Soil	RLDHKYVGPALGGNALLGEKHGLETLLRNGRGLMPAVGKNWTDAQIDALLAWTKQYAKGGTGSGG*
Ga0105246_116546141	3300011119	Miscanthus Rhizosphere	KSIERLLRQGQGQMPAVGENWSSAQIDALVSYTKQFAQKGGS*
Ga0120139_11988721	3300012019	Permafrost	ALGGNSLLADRKGIETLLRNGQGQMPAVGKNWTAAQLDALISWTKQYAKSGAK*
Ga0137390_111217602	3300012363	Vadose Zone Soil	GPALAGNSLLADRKGIETLLRKGQGQMPAVGKNWTAAQLDALISWTKQYVKGGAK*
Ga0157355_10070581	3300012493	Unplanted Soil	PDLGGNPTLTDRAGLETLLRNGTGTMPPVGRGWTDAQIDALAAYTKTLPGASSGG*
Ga0157338_10622111	3300012515	Arabidopsis Rhizosphere	EQLLRNGRGQMPAVGGAWSDAQIDALVAYTKQFAASGGS*
Ga0137416_105705721	3300012927	Vadose Zone Soil	GIEVLLRSGRGQMPSVGRDWSSSQIDALIAYTKQFAGGASG*
Ga0164303_109800622	3300012957	Soil	GNALLADRHGLETLLRNGRGAMPAVGKNWSAAQIDALIAWTKQYAKGGSTGGG*
Ga0164299_101493332	3300012958	Soil	LLTRRSGLETLLRNGRRQLPAVGKNWTAPQIDALVAYNKTLAKGGAG*
Ga0164299_111795411	3300012958	Soil	LKGNSLLANRAGIEQLLRNGRGQMPAVGGAWSDAQIDALVSYTKQFAQKGGS*
Ga0164301_103662612	3300012960	Soil	ALGGNSLLTQRSGLETLLRNGRGQMPAVGKNWTDHQIDALVAYNKTLAKGGAG*
Ga0164302_100757542	3300012961	Soil	GRGQMPSVGKDWTRQQLDALVAYTKQFAKTGGSG*
Ga0168317_10677521	3300012982	Weathered Mine Tailings	ALAGNPLLADRKGIEVLLRNGQGQMPSVGRDWTGKQLDALIAYTKQFAKPRSGG*
Ga0164307_116164711	3300012987	Soil	RKGIETLLRNGRGKMPAVGKTWSGAQIDALISWTKQYAKAGGS*
Ga0164306_104241932	3300012988	Soil	LLADRHAIEVLLRNGRGQMPSVGKDWTRQQLDALVAYTKQFAKTGGSG*
Ga0164306_106623882	3300012988	Soil	GPALQGNALLADRRGIETLLRNGRGNMPAVGKNWTDAQIDALISWTKQYASTGAAQ*
Ga0164306_107898432	3300012988	Soil	LRGNSLLANRAGLEQLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS*
Ga0164305_103726842	3300012989	Soil	LGGNTLLADRHAIEVLLRNGRGQMPSVGKDWTRQQLDALVAYTKQFAKTGGSG*
Ga0164305_108029172	3300012989	Soil	ALQGNALLADRRGIETLLRNGRGNMPAVGKNWTDAQIDALISWTKQYASTGAAQ*
Ga0157370_113702002	3300013104	Corn Rhizosphere	CHRLDHKYVGPALGGNPLLGDVKGISALLRNGGIMMPAVGKNWTDAQIQALIAYTKQFSKGAA*
Ga0157369_110569212	3300013105	Corn Rhizosphere	RNGQGQMPSVGKDWSDKQIDALVAYTKRYAKAGG*
Ga0120154_11418311	3300013501	Permafrost	LLRNGQGQMPSVGKDWTSQQLDALVAYTKQFAKQGGNG*
Ga0120173_10487092	3300014031	Permafrost	IETLLRNGRGLMPAVGKNWSSAQIDALISWTKQYVKGGGK*
Ga0182019_108971311	3300014498	Fen	NPLLADPKGITSLLRNGRGQMPAVGKNWTGPQIAALVSYTKRFAKASG*
Ga0134072_102104492	3300015357	Grasslands Soil	IGPALGGNPVLADRRGMARLLRQGQGQMPSVGRNWSAHQIDALVAYTTQFAKGGTG*
Ga0132257_1020799841	3300015373	Arabidopsis Rhizosphere	RLDKPFIGPALGGNPLLADPARITPLLRQGQGQMPAVGRNWTRAQIDALTTYTKQFAKAGGG*
Ga0182033_106534222	3300016319	Soil	ITTLLRNGQGNMPAVGHNWTRAQIDALTSYTKRFAKTGG
Ga0182035_118915971	3300016341	Soil	HALETLLRQGQGKMPAVGKNWTSHEMNALVDYTKQFAKKG
Ga0184624_101557392	3300018073	Groundwater Sediment	VRNGRGQMPAVGAGWSDEQIETLVSYTKTIAGGGQ
Ga0206351_101914481	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	ALAGNPLLADRKGIETLLRNGVSGPIGQMPAVGKNWSGHQIDALIAYTKQFAKGGG
Ga0154015_13602332	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	GGNPLLGEAKSLTPLLRNGQGQMPPVGKNWTEGQIQALVAYTKQFAKGGSS
Ga0154015_13616552	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	GLSTLLRNGGTRMPAVGKNWTDAQIQALVSYTKQFSKQGGGG
Ga0193699_101329112	3300021363	Soil	QHAIEVLLRNGQGQMPSVGKDWTSQQFDALIAYTKRFAKTGGAG
Ga0193698_10537791	3300021968	Soil	LGGNPLLADRHAIEVLLRNGQGQMPSVGKDWTSQQFDALIAYTKRFAKTGGAG
Ga0224712_102227632	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LGDRRGIETLLRNGQGQMPSVGKDWSDKQIDALVAYTKRYAKAGG
Ga0247666_10199102	3300024323	Soil	IGPALGGNPLLGDRKAIEVLLRNGQGQMPSVGKDWTSQQLDALIAYTKQFAKSGGNG
Ga0207933_12220752	3300025679	Arctic Peat Soil	LLADRKGIETLLRNGRGNMPAVGKSWSGAQIDALISWTKRYAKAGA
Ga0208357_10731131	3300025703	Arctic Peat Soil	ADRKGIETLLRNGRGKMPAVGKSWSGAQIDALISWTKQYAKAGAVG
Ga0207707_100836983	3300025912	Corn Rhizosphere	LGDRKGIETLLRNGGVQMPPVGRDWSGKQIDALVAYTKRFAKVGG
Ga0207707_112864571	3300025912	Corn Rhizosphere	HAYIGPALSGNSLLGDRKGIETLLRNGRGQMPAVGKNWTGAQIDALIAWTKQYTKGGGK
Ga0207663_103450171	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	IETLLRNGRGNMPAVGNNWTDAQIDALISWTKRYASTGAAG
Ga0207652_101396391	3300025921	Corn Rhizosphere	ALNGNPLLGDRKGIETLLRNGGVQMPPVGRDWSGKQIDALVAYTKRFAKVGG
Ga0207650_119224412	3300025925	Switchgrass Rhizosphere	GIETLLRDGGVQMPPVGRDWSDGQIDALVAYTKRFAKAGG
Ga0207690_106568891	3300025932	Corn Rhizosphere	GPALQGNPLLADRKGMETLLRKGGIQMPSVGRDWSDKQIDALVAYTKRFAAAGG
Ga0207686_101323341	3300025934	Miscanthus Rhizosphere	ALAPLLRDGRGQMPAVGRTWTPHQITALVSYTKRFAKSGGGGGG
Ga0207686_109333572	3300025934	Miscanthus Rhizosphere	AGLEQLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS
Ga0207639_104878661	3300026041	Corn Rhizosphere	LDHPYIGPALAGNPLLGDAKGLSTLLRNGGTRMPAVGKNWTDAQIQALVSYTKQFSKQGGGG
Ga0207702_115305871	3300026078	Corn Rhizosphere	QLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS
Ga0209470_13533932	3300026324	Soil	LADRKGIETLLRNGGTRMPAVGRNWTGAQIDALIAWTKQYAKAAQ
Ga0209074_102053891	3300027787	Agricultural Soil	KGLTTLLRNGQGQMPSVGRDWSDRQIDALVAYTKRFAKAGG
Ga0209006_113307791	3300027908	Forest Soil	PALGGNSLLANRKGIESLLRNGEGQMPAVAKNWTSAQIDALISYTKQFATASSG
Ga0307322_101557182	3300028710	Soil	LLANRAALEQLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS
Ga0307316_100762222	3300028755	Soil	LRGNSLLANRAALEQLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS
Ga0307306_101876602	3300028782	Soil	RAALEQLLRNGRGQMPKVGAGWSDAQIDALVAYTKQFAKGGS
Ga0307504_102498122	3300028792	Soil	ADRKSIETLLRNGGIQMPSVGRDWSAHQIDALVAYTKRFAKAGG
Ga0265338_107274031	3300028800	Rhizosphere	TSLLRNGQGQMPAVGKNWTDAQIAALVSYTKRFAKASG
Ga0307310_107448171	3300028824	Soil	LGGNSLLGDRKGIETLLRNGRGQMPAVGKNWTGAQIDALIAWTKQYTKLGAK
Ga0311333_107385392	3300030114	Fen	ALGNNPLLGDVAGLTTLLRNGGNQMPAVGKNWTDAQIQALVAYTKQYASGYSP
Ga0311333_108968701	3300030114	Fen	NNPLLADRKGIETLLRNGQGQMPPVGKNWTPEQIDALVAYTKQFAKGGTS
Ga0311349_104168362	3300030294	Fen	RKGIETLLRNGQGQMPPVGKNWTPEQIDALVAYTKQFVKGGTS
Ga0311335_112603791	3300030838	Fen	ETLLRNGQGQMPPVGKNWTPEQIDALVAYTKQFVKGGAS
Ga0073997_112645861	3300030997	Soil	AGNSLLGDRKGIETLLKEGRGQMPAVGKNWTGEQIDALIAWTKQYVKAAGK
Ga0170824_1252179111	3300031231	Forest Soil	IGPALGGNPLLSDVSGLTTLLRNGQGQMPAVGKNWTNAQIEALVAYTKHLPKGGGS
Ga0265340_105594262	3300031247	Rhizosphere	HKYIGPALGGNPLLSDVKGLTTLLRSGQGQMPAVGKNWTDAQIQALVAYTKTLPKGSG
Ga0265339_105851472	3300031249	Rhizosphere	GNPLLSDVKGLTTLLRSGQGQMPAVGKNWTDAQIQALVAYTKQFPKGSG
Ga0265327_101428772	3300031251	Rhizosphere	LLSDVKGLTTLLRSGQGQMPAVGKNWTDAQIQALVAYTKQFPKGSG
Ga0307408_1004515302	3300031548	Rhizosphere	KGIETLLRNGGIKMPAVGNTWTDEQIDALVAYTKRFAKEGGEGGGQG
Ga0318571_101269992	3300031549	Soil	YIGPALGGNPLLADEHALETLLRQGQGKMPAVGKNWTSHEMNALVDYTKQFAKKG
Ga0318560_101017881	3300031682	Soil	ALETLLRQGQGKMPAVGKNWTSHEMNALVDYTKQFAKKG
Ga0265342_101536112	3300031712	Rhizosphere	RLDHSYIGPALGGNPLLSDVKGLTTLLRSGQGQMPAVGKNWTDAQIQALVAYTKTLPKGS
Ga0318526_104634271	3300031769	Soil	CHRLDHAFIGPALGGNPLLAEPARITPLLRQGQGQMPAVGHNWTRAQIDALVSYTKQFAKTGG
Ga0318567_108198491	3300031821	Soil	GGNPLLADRKGIASLLRKGGTTMPPVGKNWTPYQIDALVAYTSQFAKKGP
Ga0306925_118591422	3300031890	Soil	LLRQGQGQMPAVGHNWTRAQIDALVSYTKQFAKTGG
Ga0318536_100699191	3300031893	Soil	TYIGPPLGGNPLLAQPLQITTLLRNGQGNMPAVGHNWTRAQIDALTSYTKMFAKTGG
Ga0318522_102940461	3300031894	Soil	LGGNPLLADEHALETLLRQGQGKMPAVGKNWTSHEMNALVDYTKQFAKKG
Ga0308175_1007949211	3300031938	Soil	HAYVGPALGGNPLLGDVKGLTTLLRNGQGQMPPVGKNWTHAQIQALVSYTRRFAKQGGGG
Ga0306922_108622431	3300032001	Soil	RITPLLRQGQGQMPAVGHNWTRAQIDALVSYTKQFAKTGG
Ga0318514_101341681	3300032066	Soil	GNPLLAEPARITPLLRQGQGQMPAVGHNWTRAQIDALVSYTKQFAKTGG
Ga0307415_1005827991	3300032126	Rhizosphere	GGIKMPAVGNTWTDEQIDALVAYTKRFAKEGGEGGGQG
Ga0335080_102030773	3300032828	Soil	PLGGNPLLAEPVAITTLLRNGQGNMPAVGHNWTRAQIDALTSYTKQFAKTGG
Ga0335076_100940311	3300032955	Soil	RLDHTYIGPPLGGNPLLAEPVAITTLLRNGQGNMPAVGHNWTRAQIDALTSYTKQFAKTG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087870

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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