NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087860

Metagenome Family F087860

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087860
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 42 residues
Representative Sequence IGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Number of Associated Samples 19
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.91 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 15
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(98.182 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 33.80%    β-sheet: 0.00%    Coil/Unstructured: 66.20%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF15502MPLKIP 0.91
PF10149TM231 0.91
PF02801Ketoacyl-synt_C 0.91
PF14572Pribosyl_synth 0.91
PF00078RVT_1 0.91
PF16087DUF4817 0.91
PF02170PAZ 0.91



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.09 %
All OrganismsrootAll Organisms0.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300028325|Ga0268261_10031863All Organisms → cellular organisms → Eukaryota → Opisthokonta4362Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut98.18%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut0.91%
Termite GutHost-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001544Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002125Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4Host-AssociatedOpen in IMG/M
3300002175Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5Host-AssociatedOpen in IMG/M
3300002185Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002238Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1Host-AssociatedOpen in IMG/M
3300002308Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4Host-AssociatedOpen in IMG/M
3300002462Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4Host-AssociatedOpen in IMG/M
3300002508Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1Host-AssociatedOpen in IMG/M
3300005200Nasutitermes gut metagenomeHost-AssociatedOpen in IMG/M
3300027539Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)Host-AssociatedOpen in IMG/M
3300027558Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes)Host-AssociatedOpen in IMG/M
3300027670Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)Host-AssociatedOpen in IMG/M
3300027891Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)Host-AssociatedOpen in IMG/M
3300027904Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027960Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)Host-AssociatedOpen in IMG/M
3300027966Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027984Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028325Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028327Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20163J15578_1035984323300001544Termite GutVKEAASVVQCWPLVPKFAGSNPAEAVGFLRAKKSSAHFPSEGK*
JGI20163J15578_1048020313300001544Termite GutGLGVACWPLEPKFAGSNPAEAVGFLRAKKSSALLPSEGK*
JGI20163J15578_1049769413300001544Termite GutGLGVSCWPLVPKLAGSNPAEAVGFLSTKKSSARLPSEGK*
JGI20163J15578_1056548613300001544Termite GutMPGSGFGGLGVASWPLVPKFAEAEAVGFLRAKKSSARLPSEGK*
JGI20165J26630_1004106333300002125Termite GutFGGLDVVRWRLVPKFRDSNPAEAVRFLRAKKSSAHLPSEGK*
JGI20165J26630_1065946823300002125Termite GutMGTTCNESGLGGLRVACWPLVPKFAGSNPAEAVGCLRAKKSSAR
JGI20166J26741_1011281713300002175Termite GutMGQPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
JGI20166J26741_1107304843300002175Termite GutMVPYRLQCWPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
JGI20166J26741_1178395633300002175Termite GutMFSGFGGLGVACWPLEPKFAGSNPAEAVGFLRAKKSSARLPS
JGI20163J26743_1057882913300002185Termite GutGGLEVVCWPLVPKLAGSNPAEAIGFLRVKKSSARLPSEG*
JGI20163J26743_1141292113300002185Termite GutACWPLVPKFAGSNPAEAVGILRAKKSSARLPSEGE*
JGI20169J29049_1098822413300002238Termite GutCWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK*
JGI20169J29049_1139282133300002238Termite GutEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLTSEGK*
JGI20171J29575_1240467613300002308Termite GutMFCMQYVDGFGGLEVAVPKFAGSNLAEAVGFLRAKKSSARLPSEG
JGI24702J35022_1040072123300002462Termite GutGGLGVACCPLVPKFVGSDPAEAVGFLRAKKSSAHIPSEG*
JGI24700J35501_1043427613300002508Termite GutGGLEVACWPLVPKFVGSNPAEAVGFLRAKKFSARLPSEGK*
JGI24700J35501_1085648063300002508Termite GutGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSAHLPSEGK*
Ga0072940_115613413300005200Termite GutLNSTYINALKNGFGDLEAACWPLVPKFACSHLAEAXXFLGRKKKSSTR
Ga0209424_106516813300027539Termite GutRIIGFGGLEVACWPLVPKFAGSNLAEAVGFLRAKISSACLPSEGK
Ga0209424_111123413300027539Termite GutMIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARL
Ga0209424_114810113300027539Termite GutVKFILVSNIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSS
Ga0209424_116913013300027539Termite GutMLHFIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSEG
Ga0209424_126808013300027539Termite GutMTGFRGLEVACLPLVPKFAGSNPAEAVGFLRAKKSSARL
Ga0209531_1029847123300027558Termite GutMGYVGFGGLGVACWPLVPKFAGSNPAEAVGFLRAKKYSARLP
Ga0209423_1001138713300027670Termite GutMNLGIGFGGLEAACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0209423_1013243323300027670Termite GutGGLEVAFWPLVPKFAGSNPTEAIGFLRAKKSSARLPSEGHVKNP
Ga0209423_1019673113300027670Termite GutFGGLEVACWPLVPKFADSHPAEAVGVFRAKKSSAHLSSEGK
Ga0209423_1020423513300027670Termite GutVLACWPLLPKFTGSNSAEAVGFLRAKKSSAQLTTEGK
Ga0209423_1021017113300027670Termite GutVYIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKK
Ga0209423_1021875413300027670Termite GutLLYLLTIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAK
Ga0209423_1022362613300027670Termite GutMIGFGGLEEACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0209423_1033267913300027670Termite GutMLNIGFGGLEVACWPLVPKFAGSNPAEAIGFLRAKKSSARLPSEG
Ga0209423_1038940733300027670Termite GutVQFTGFGGLEVACWPLVPKFMGSNPAEAVGFLRAKKSSARL
Ga0209423_1042622613300027670Termite GutHYFKGGFGGLEVACWPLVPKFAGSNPAEAIGFLRAKKSSAGLPSEGK
Ga0209423_1047199013300027670Termite GutIMIMLIGFGGLEVACWPLVPKFTGSNPAEVVGFLRAKKSSARLPSEGK
Ga0209628_1005494733300027891Termite GutMTSPTGFGGRGVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209628_1005576113300027891Termite GutVKEAASVVQCWPLVPKFAGSNPAEAVGFLRAKKSSAHFPSEGK
Ga0209628_1007444213300027891Termite GutMISKSDFGGLGVACWALVPKFTGTNPAEAIGFLRAKKSSARLSSEWK
Ga0209628_1077782813300027891Termite GutMDMVSGFGGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSACLP
Ga0209628_1130533613300027891Termite GutMVVSGFGGLGVACWPLVPKYAGSNPAEAVGFLRAKKSSARLPSEG
Ga0209737_1028539613300027904Termite GutMGVACWPLVPKFAGSNPAEAVGFLRAKTSSARLPSEG
Ga0209737_1061104513300027904Termite GutVSLGVACWPLVPKFAGSNPAEAVGFLRAKKFSARLPSEG
Ga0209737_1077095813300027904Termite GutMNISGFGGLGVACWLLVPKFAGSNPAEAVGFLRAKKSSARL
Ga0209737_1082329623300027904Termite GutMSGFGGLEVACWPLVPKFAGSNPGEAVGFLRAKKSSARLPS
Ga0209737_1100390113300027904Termite GutVISDFGGLGVSCWPLVPKFVGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209737_1109136313300027904Termite GutMFSGFGGLGVTCWPLEPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0209737_1134030313300027904Termite GutLSGFGGLGVTCWPLVPKFAGSNPAEAVGFLRAKKSSARLRRGSK
Ga0209737_1152072913300027904Termite GutMFTSGFGGLGVARWPLGPKFAGSNPAEAVGFLRAKKSSARLPSEG
Ga0209737_1168809913300027904Termite GutMFYVIKLSRFGGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0209627_114235423300027960Termite GutMIYSGFGGLGVASWPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0209738_1000341013300027966Termite GutGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKTSARLPLEGK
Ga0209738_1007626113300027966Termite GutMYDYRIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKK
Ga0209738_1009023313300027966Termite GutMLCGFDFSGLEVACWPLVPKFAGSNPAEAVGFLRAKKSS
Ga0209738_1011573713300027966Termite GutMTGFRGLEVACLPLVPKFAGSNPAEAVGFLRAKKSSARLPSKGK
Ga0209738_1018881413300027966Termite GutLMHDIGGLEVACWPLGPKFAGSIPAEAVGFLRAKKSSARLPSEGK
Ga0209738_1019095813300027966Termite GutMITGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSAHLPSEGK
Ga0209738_1022568213300027966Termite GutVFLYLYCVSFGGLDVACWPLVPKFAGSNPAEAVGFLRAKKSSARLP
Ga0209738_1023921513300027966Termite GutMIILHGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0209738_1025283213300027966Termite GutVYDCLTGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKS
Ga0209738_1029891913300027966Termite GutMQPFIGFGGLEVACRPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209738_1034692023300027966Termite GutMRGFGGLEVACLPLVTKFAGSHPVKAVGFLGQKKIL
Ga0209738_1053268113300027966Termite GutLDGYVDSIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAK
Ga0209738_1058407313300027966Termite GutLTGFGGLEVAFWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEG
Ga0209738_1061904013300027966Termite GutLIYREFIGFGGLEVACWPLVPKFAGSNPAEAVGFLRA
Ga0209629_1002094283300027984Termite GutGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSACLLSEGK
Ga0209629_1005224323300027984Termite GutVVACWPLVPKFVGSNPAEAVGFLRAKKSSARHPSEGK
Ga0209629_1005644713300027984Termite GutMPIDAYSGFGGLGVACWPLEPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209629_1015260233300027984Termite GutMGFGGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSARL
Ga0209629_1017556113300027984Termite GutMVPYRLQCWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209629_1029993013300027984Termite GutVVAWWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEG
Ga0209629_1030111413300027984Termite GutGFGGLGVACWPLVPKFAGSNPAEAVGFLRAKTSSACLPSEGK
Ga0209629_1044313713300027984Termite GutMNKSGFDGLGVACWPLVPKFAGSNPVEAVGFLRAKKSSARLPSVG
Ga0209629_1048700613300027984Termite GutNELKQHKPGFGDLGVACWPLAPKFAGSNLAEAVRFLRAKKSSSRLPAEGK
Ga0209629_1065465613300027984Termite GutVEADCGFGGLGVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209629_1067306813300027984Termite GutSGFGGLGLACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0209629_1082207013300027984Termite GutLQSGFGGLGVACWPLVPKFAGSNPAEAVGFLRGEKILS
Ga0209629_1096260513300027984Termite GutMCRFGGLGVACWPLVPKFGGSNPAEAVGFLRAKKSSARLPSEG
Ga0209629_1100993213300027984Termite GutVACWPLVPKFAGSNLAEAVGFLRAKKSSARLPSEGK
Ga0209629_1101834413300027984Termite GutMSLQHTQSGFGGLGVVCWPLVPKFAGSNPAEAVGFLRAKK
Ga0268261_10004012103300028325Termite GutGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1003186363300028325Termite GutMYIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0268261_1004290923300028325Termite GutMVTYDIIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAEKSSARLPSEGK
Ga0268261_1004425233300028325Termite GutMGIGFGGLEVAGWSLVPKFAGSDPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1005877833300028325Termite GutMVCKGIDFSGLEVACWPLVPKFAGSNLAEAVGFLRAKKSSARLPSEGK
Ga0268261_1012689113300028325Termite GutMIGFGGIEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEG
Ga0268261_1014576113300028325Termite GutMLIGGFGGLEVACWPLVPKFEGSNPAEAVGFLSAKKSSARLPSEGK
Ga0268261_1016674213300028325Termite GutMIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLLSEGK
Ga0268261_1018751413300028325Termite GutMEGTGFGGLEVACCPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0268261_1019351623300028325Termite GutPNYRRIGLGGLEVACWPLVPKFVGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1025285513300028325Termite GutMSYIYIYIYIYKNGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLLSERK
Ga0268261_1031747613300028325Termite GutMLRFVTCDLYVYLIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAK
Ga0268261_1033991013300028325Termite GutMIFYYYITGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0268261_1036536723300028325Termite GutMIGFGGLEVVCWPLVPKFAGSNPAEAVGFLRAKKSSAHLP
Ga0268261_1038704523300028325Termite GutSIPTQGFDGLEVACWPLVPKFAGSNLAEAVRSLRAKKSSARLPSEGK
Ga0268261_1040952613300028325Termite GutIGFGGLEVECWPLVPKFAGSNPAKAVGFLRAKKFSARLPSEGK
Ga0268261_1041255813300028325Termite GutEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1042555313300028325Termite GutMTIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSA
Ga0268261_1045955713300028325Termite GutMIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPLEGK
Ga0268261_1047349123300028325Termite GutMEQNGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0268261_1051227123300028325Termite GutMFCILIIFGFGGLEVACWPLVPKLAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1051716513300028325Termite GutMIGFGGLEEACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEG
Ga0268261_1052343813300028325Termite GutMYYVYIGFGALEVACWPLVPKFAGSNPAEAVGFLRAKKSSA
Ga0268261_1056188213300028325Termite GutEVACWPLVPKFTGSNPAEAVGFLRAKKSSARLLSEGK
Ga0268261_1056248913300028325Termite GutLNCMLMIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSS
Ga0268261_1058778013300028325Termite GutIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1066902513300028325Termite GutMFYINFCYITQNGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSE
Ga0268261_1072298513300028325Termite GutMYIILNGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPSEGK
Ga0268261_1074539513300028325Termite GutMIGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSSARLPS
Ga0268262_1035408813300028327Termite GutMTGFGGLEVACWPLVPKFAGSNPAEAVGFLRAKKSTARLPSEGK
Ga0268262_1045103313300028327Termite GutMLLLIGFVGLEVVCWPLVPKLAGSNPAEAVGFLRAKKPSRLSSEGK


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