NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087830

Metagenome / Metatranscriptome Family F087830

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087830
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 79 residues
Representative Sequence LPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRGVPLERIAWFQFGLDAV
Number of Associated Samples 105
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.09 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 81.82 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.909 % of family members)
Environment Ontology (ENVO) Unclassified
(38.182 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(34.545 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 75.61%    β-sheet: 0.00%    Coil/Unstructured: 24.39%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF00482T2SSF 86.36
PF00437T2SSE 9.09
PF01661Macro 1.82
PF03819MazG 0.91
PF00012HSP70 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG2110O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domainTranslation, ribosomal structure and biogenesis [J] 1.82
COG0443Molecular chaperone DnaK (HSP70)Posttranslational modification, protein turnover, chaperones [O] 0.91

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1044313All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300002245|JGIcombinedJ26739_101430093All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria585Open in IMG/M
3300002245|JGIcombinedJ26739_101762606All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300003405|JGI26132J50249_103159All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300003994|Ga0055435_10029588All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300004024|Ga0055436_10151859All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300004058|Ga0055498_10151585All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300004156|Ga0062589_102687628All Organisms → cellular organisms → Bacteria → Proteobacteria518Open in IMG/M
3300004281|Ga0066397_10114722All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300004480|Ga0062592_100592478All Organisms → cellular organisms → Bacteria → Proteobacteria940Open in IMG/M
3300005295|Ga0065707_10181378All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1409Open in IMG/M
3300005341|Ga0070691_10121277All Organisms → cellular organisms → Bacteria1317Open in IMG/M
3300005468|Ga0070707_100038637All Organisms → cellular organisms → Bacteria → Proteobacteria4560Open in IMG/M
3300005526|Ga0073909_10700674All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005563|Ga0068855_100514090All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1300Open in IMG/M
3300005843|Ga0068860_100107675All Organisms → cellular organisms → Bacteria2664Open in IMG/M
3300005844|Ga0068862_100085571All Organisms → cellular organisms → Bacteria2740Open in IMG/M
3300006047|Ga0075024_100860389All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300006163|Ga0070715_10126258All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300006176|Ga0070765_101874922All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300006806|Ga0079220_10298027All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300006806|Ga0079220_11418629All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300006847|Ga0075431_100130531All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geoalkalibacter2592Open in IMG/M
3300006881|Ga0068865_101810405All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300006954|Ga0079219_10074079All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1571Open in IMG/M
3300009088|Ga0099830_10006352All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6885Open in IMG/M
3300009147|Ga0114129_12440537All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300009157|Ga0105092_10588839All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300009176|Ga0105242_12870954All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300009177|Ga0105248_10492197All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1382Open in IMG/M
3300009807|Ga0105061_1031117All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300010046|Ga0126384_11748227All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300010362|Ga0126377_11209143All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300010396|Ga0134126_10137903All Organisms → cellular organisms → Bacteria2967Open in IMG/M
3300010401|Ga0134121_12521444All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300011395|Ga0137315_1038023All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300011410|Ga0137440_1057006All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300011429|Ga0137455_1088577All Organisms → cellular organisms → Bacteria900Open in IMG/M
3300012133|Ga0137329_1053679All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300012202|Ga0137363_10642586All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300012203|Ga0137399_10288531All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1353Open in IMG/M
3300012207|Ga0137381_11287819All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300012909|Ga0157290_10399505All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300012918|Ga0137396_10675465All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300012927|Ga0137416_12081547All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300012957|Ga0164303_10110611All Organisms → cellular organisms → Bacteria1381Open in IMG/M
3300012957|Ga0164303_10864365All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300013100|Ga0157373_11251491All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300013308|Ga0157375_10542038All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1326Open in IMG/M
3300014325|Ga0163163_11490646All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300014326|Ga0157380_10331530All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1415Open in IMG/M
3300014745|Ga0157377_10504235All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300014877|Ga0180074_1082495All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300015254|Ga0180089_1003267All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2576Open in IMG/M
3300015256|Ga0180073_1094278All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300015372|Ga0132256_102153699All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300017944|Ga0187786_10528925All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300017974|Ga0187777_10052578All Organisms → cellular organisms → Bacteria2623Open in IMG/M
3300018027|Ga0184605_10166329All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300018028|Ga0184608_10148286All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300018070|Ga0184631_10068220All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1338Open in IMG/M
3300018082|Ga0184639_10590360All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium546Open in IMG/M
3300019249|Ga0184648_1211085All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1614Open in IMG/M
3300019882|Ga0193713_1061967All Organisms → cellular organisms → Bacteria1065Open in IMG/M
3300020070|Ga0206356_11686938All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300020150|Ga0187768_1011425All Organisms → cellular organisms → Bacteria1833Open in IMG/M
3300020579|Ga0210407_10094695All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2263Open in IMG/M
3300021081|Ga0210379_10177990All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300021168|Ga0210406_10054055All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria3503Open in IMG/M
3300021972|Ga0193737_1061046All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300022531|Ga0242660_1002108All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2668Open in IMG/M
3300022532|Ga0242655_10000617All Organisms → cellular organisms → Bacteria4238Open in IMG/M
3300023073|Ga0247744_1094239All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300024241|Ga0233392_1033759All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300025560|Ga0210108_1057593All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300025885|Ga0207653_10019623All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2133Open in IMG/M
3300025915|Ga0207693_10911346All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300025922|Ga0207646_10070911All Organisms → cellular organisms → Bacteria3112Open in IMG/M
3300025941|Ga0207711_10358476All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1351Open in IMG/M
3300025949|Ga0207667_10919343All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300026075|Ga0207708_11374417All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300026089|Ga0207648_10166032All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae1951Open in IMG/M
3300026514|Ga0257168_1087743All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300026752|Ga0207473_104903All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300026888|Ga0209900_1018091All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300027765|Ga0209073_10110452All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300027787|Ga0209074_10212903All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300027846|Ga0209180_10010367All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae4801Open in IMG/M
3300027862|Ga0209701_10003846All Organisms → cellular organisms → Bacteria9851Open in IMG/M
3300027862|Ga0209701_10030877All Organisms → cellular organisms → Bacteria3480Open in IMG/M
3300027949|Ga0209860_1041472All Organisms → cellular organisms → Bacteria611Open in IMG/M
(restricted) 3300027995|Ga0233418_10050322All Organisms → cellular organisms → Bacteria1159Open in IMG/M
3300028380|Ga0268265_10223770All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae1648Open in IMG/M
3300028381|Ga0268264_10087872All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2674Open in IMG/M
3300028715|Ga0307313_10187354All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300028792|Ga0307504_10028399All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1459Open in IMG/M
3300028792|Ga0307504_10112426All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300028807|Ga0307305_10022973All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2815Open in IMG/M
3300028819|Ga0307296_10036012All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales2614Open in IMG/M
3300031057|Ga0170834_109121641All Organisms → cellular organisms → Bacteria812Open in IMG/M
(restricted) 3300031248|Ga0255312_1027331All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1363Open in IMG/M
3300031424|Ga0308179_1012454All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300031455|Ga0307505_10645180All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300031858|Ga0310892_11153270All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300032075|Ga0310890_10288145All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300033233|Ga0334722_10399175All Organisms → cellular organisms → Bacteria993Open in IMG/M
3300033433|Ga0326726_10516659All Organisms → cellular organisms → Bacteria1143Open in IMG/M
3300033501|Ga0326732_1014054All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1422Open in IMG/M
3300034176|Ga0364931_0200328All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300034817|Ga0373948_0128174All Organisms → cellular organisms → Bacteria619Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.91%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.18%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.36%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.36%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.55%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.64%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.73%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.73%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.73%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.82%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.82%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.82%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.82%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.82%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.82%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.91%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.91%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.91%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.91%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.91%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.91%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.91%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.91%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.91%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.91%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000596Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TCEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003405Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AMHost-AssociatedOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011395Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2EnvironmentalOpen in IMG/M
3300011410Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2EnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300012133Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014877Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10DEnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015256Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10DEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018070Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300019249Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020150Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021972Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300024241Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PBEnvironmentalOpen in IMG/M
3300025560Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026752Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300026888Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027949Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300027995 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MGEnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031424Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033501Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fractionEnvironmentalOpen in IMG/M
3300034176Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
KanNP_Total_noBrdU_T14TCDRAFT_104431323300000596SoilLPKSQXLRSSLWGLNRARLLTAAIVLAVGALLRVTEAFPYAFGPFAIMVLGVAAAGLVLPLADSRGVAPDRIAWFQFGLDALLIT
JGIcombinedJ26739_10143009313300002245Forest SoilLPKSQAFRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYSFGTFAIAVIGGAASCLVLPTADRFGVRIERVAWFQVGLDALLITGIVTASGGPQSVFIPLYVLLV
JGIcombinedJ26739_10176260613300002245Forest SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYPFGPFTLTVLGGVAACLVLPIAERWDIRPARIAWFQFTLDAVL
JGI26132J50249_10315913300003405Arabidopsis Thaliana RhizosphereLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADRRGIRPDRIAW
Ga0055435_1002958823300003994Natural And Restored WetlandsLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRGVP
Ga0055436_1015185923300004024Natural And Restored WetlandsLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERR
Ga0055498_1015158523300004058Natural And Restored WetlandsLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMAVLGGAAACLVLP
Ga0062589_10268762823300004156SoilLPKSPALRSSLWGLNRARLLAVVIVLAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRSVPLERIAWFQFGLDAVLI
Ga0066397_1011472223300004281Tropical Forest SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRVTDAFPYAFSPFAVMVLGVAAAGLVLPLADRRGVALERIAWFQFGLDALLITGIVTVSGGPR
Ga0062592_10059247823300004480SoilLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFLYAFGTFVVTVLGGAATGLVLPLGERRGVPLERIAWF
Ga0065707_1018137823300005295Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYTFGTFVMTVLGGAAAGLVLPLG
Ga0070691_1012127723300005341Corn, Switchgrass And Miscanthus RhizosphereLPKSQALQSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGRFTLTVLGGIAACLVLPLADRWGMRPERIAWIQFALDAALITAIVTESGGPQSVFIPLY
Ga0070707_10003863763300005468Corn, Switchgrass And Miscanthus RhizosphereLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYTFGPFAMAVLGGAAACLVLPLAERWD
Ga0073909_1070067413300005526Surface SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLPLAD
Ga0068855_10051409013300005563Corn RhizosphereLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADR
Ga0068860_10010767513300005843Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPLE
Ga0068862_10008557113300005844Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPL
Ga0075024_10086038923300006047WatershedsLPKSQVFRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYSFGTFAIAVIGGAASCLVLPTADRFGVRIERVAWFQVGLDAL
Ga0070715_1012625823300006163Corn, Switchgrass And Miscanthus RhizosphereLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWDIRPARIAWFQFTLDAVLITAIVTESGGPQS
Ga0070765_10187492223300006176SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWD
Ga0079220_1029802723300006806Agricultural SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPHAFGPFGTIVLGGAAACLLLPLAERWGASPERIAWVQFALDGDGR
Ga0079220_1141862913300006806Agricultural SoilLPKLQVLQSSLWGLNRARLLTAAIVLAVGALLRFTDAFPYAFGPFSLIVLGGVAACLVLPVAERLSVRSDHIAWFQFSLDAVLITAIVTESGGPQSVFIPLYVL
Ga0075431_10013053113300006847Populus RhizosphereLPKPQVLQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRS
Ga0068865_10181040513300006881Miscanthus RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLV
Ga0079219_1007407913300006954Agricultural SoilLPKLQVLQSSLWGLNRARLLTAAIVLAVGALLRFTDAFPYAFGPFSLTVLGGVAACLVLPVAERLSVRSDHIAWFQFSLDA
Ga0099830_1000635213300009088Vadose Zone SoilVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLP
Ga0114129_1244053713300009147Populus RhizosphereLPKPQVLQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHI
Ga0105092_1058883913300009157Freshwater SedimentLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMAVLGCVAACLVLPVAERRGVPLERIAWFQFGLDAILITGIVTATGGPQSVFI
Ga0105242_1287095423300009176Miscanthus RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHIAWFQISLHAVLITAIV
Ga0105248_1049219723300009177Switchgrass RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHIAWFQISLDAVLITAIVTDSG
Ga0105061_103111713300009807Groundwater SandLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTMTVLGGAAAFLVLPLAERWDARPERIAWFQFGLDALLITGIVTASGGP
Ga0126384_1174822723300010046Tropical Forest SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTDAFLHAFGPFATIVLGGAAACLLLPLAERLGASPERIAWVQFALD
Ga0126377_1120914313300010362Tropical Forest SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRVTDAFPYAFGPFAIMVLGVAAAGLLLPLADRRTVPLERI
Ga0134126_1013790313300010396Terrestrial SoilLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVVGGVAACLVLPVADWLRVRSEHIAWFQISLDAVLITAIVTD
Ga0134121_1252144423300010401Terrestrial SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLPMADRWNIGPERIAWFQFTLDAVLITA
Ga0137315_103802323300011395SoilLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGTFALTVLGGAAACLVLPLGERRGVPLERIAWFQFGLDAVFITAIVTATGGPQSDFIPLYVLPAVASRFFLSRRGG
Ga0137440_105700623300011410SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMAVLGGAAACLVLPLGERRGVPLERIAWFEFGLDAVFITAIVTATGGPQSV
Ga0137455_108857713300011429SoilLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGTFALTVLGGATACLVLPLGERRGVPLE
Ga0137329_105367913300012133SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRGVPPERIAWFQFGLDAILITGIITATGGPQ
Ga0137363_1064258613300012202Vadose Zone SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVFGGIAACLVLPVADRWEIRPARIAWFQFA
Ga0137399_1028853113300012203Vadose Zone SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVFGGIAACLMLPVADRWEIRPARIAWFQFA
Ga0137381_1128781913300012207Vadose Zone SoilLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYAFDTFAMTVLGGAAACLVLPLGERRGVPLERIAWFQ
Ga0157290_1039950523300012909SoilLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLA
Ga0137396_1067546523300012918Vadose Zone SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVFGGIAACLVLPVADRWEIRPAR
Ga0137416_1208154723300012927Vadose Zone SoilLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYAFGTFAMTVIGGAASCVILPLGARRGVSLERIAWFQ
Ga0164303_1011061123300012957SoilLPKPQVLQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHIAWFQIS
Ga0164303_1086436513300012957SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLP
Ga0157373_1125149123300013100Corn RhizosphereLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPPERIAWF
Ga0157375_1054203823300013308Miscanthus RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHIAWFQISLDAVLITAIVT
Ga0163163_1149064623300014325Switchgrass RhizosphereLPKPQVLQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLR
Ga0157380_1033153013300014326Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVP
Ga0157377_1050423513300014745Miscanthus RhizosphereLPKPQVLQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWLRVRSEHIAWFQISLDAVLITAIVTDSG
Ga0180074_108249513300014877SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFALTVLGGAAACLVLPLGERRGVPLERIAWFQFGLDAVLITGIITAT
Ga0180089_100326713300015254SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFALTVLGGAGACLVLPLGERRGVPLERIAWLQ
Ga0180073_109427823300015256SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFALTVLGGAGACLVLPLGERRGVPLERIAWLQFG
Ga0132256_10215369913300015372Arabidopsis RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVADWL
Ga0187786_1052892513300017944Tropical PeatlandVLRSSLWGLNRARLLTAAIVLAVGALLRISDAFPYAFGPFALAVLGVAAAGLVLPL
Ga0187777_1005257813300017974Tropical PeatlandLPKSQALRTSLWGLNRARLLTAAIVLAVGALLRLSEAFPYSFGTFATAVIGGAASCLVLPIAERFEIRLERIAWVQVGLDALLITG
Ga0184605_1016632923300018027Groundwater SedimentLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYPFGTFAMAVLGGAAACLVLP
Ga0184608_1014828623300018028Groundwater SedimentLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGTFALTVLGGAAACLVLPLGERRGVPLQRIAWFQFGVDAILITGIITATGGPQSVFIPLYVLLVV
Ga0184631_1006822023300018070Groundwater SedimentLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGTFALTVLGGAGACLV
Ga0184639_1059036013300018082Groundwater SedimentLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFAPFATTVLGGAAACLVLP
Ga0184648_121108513300019249Groundwater SedimentLPKSPALRSSLWGLNRARLLSVAIVLAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRGVPPERIAWFQFGLDAILITAIVTATGGPQSVF
Ga0193713_106196713300019882SoilLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYPFGTFAMAVLGGAAACLVL
Ga0206356_1168693813300020070Corn, Switchgrass And Miscanthus RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACLVLPVA
Ga0187768_101142533300020150Tropical PeatlandLPKSQALRTSLWGLNRARLLTAAIVLAVGALLRLSEAFPYSFGTFATAVIGGAASCLVLPIAERFEIRLERIAWVQVGLDAL
Ga0210407_1009469513300020579SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWDIRPAR
Ga0210379_1017799023300021081Groundwater SedimentLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGTFALTVLGGAAACLVLPLGERRGVPLERIVWFG
Ga0210406_1005405553300021168SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWDIRPARIAWFQFTLDAV
Ga0193737_106104623300021972SoilLPKSPALRSSLWGLNRARLLTAAIALAVGALLRFTEAFPYAFGPFALTVLGGAAACLVLPLGERRGVPLERIA
Ga0242660_100210833300022531SoilLPKSQAFRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYSFGTFAIAVIGGAASCLVLPTADRFGVRIE
Ga0242655_1000061713300022532SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWDIRPARIAWFQFTLDAVLITAIVTESGGPQSVF
Ga0247744_109423923300023073SoilLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADRRGIRPDRIAWFQFSLD
Ga0233392_103375923300024241Deep Subsurface SedimentLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFSTFALTVLGGAAACLVLPLGERRGVPLERIVWFGFGLDAVFITAIVTATGGPQSVFIPL
Ga0210108_105759323300025560Natural And Restored WetlandsLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGE
Ga0207653_1001962333300025885Corn, Switchgrass And Miscanthus RhizosphereLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLPLADRWNIGPERIAWFQFTFDAVLI
Ga0207693_1091134613300025915Corn, Switchgrass And Miscanthus RhizosphereLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRLTEAFPYAFGPFTLTVLGGVAACLVLPIAERWDIRPARIAWFQFTLDAVLITAIVT
Ga0207646_1007091143300025922Corn, Switchgrass And Miscanthus RhizosphereLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLPLADRWNIGPERIAWFQFTFDAVLITAVV
Ga0207711_1035847613300025941Switchgrass RhizosphereLPKPQALQSSLWGLNRARLLTAVIVLAVGALLRFTDAFPYAFGPFSLIVFGGVAACL
Ga0207667_1091934313300025949Corn RhizosphereLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADRRGIRPDRIAWFQ
Ga0207708_1137441713300026075Corn, Switchgrass And Miscanthus RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPLER
Ga0207648_1016603233300026089Miscanthus RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPLERIAWFQFGLDAILITGIITATGGPQSVFIPLYVL
Ga0257168_108774313300026514SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVFGGIAACLVLPVADRWEIRPARIAWFQFALDAVL
Ga0207473_10490323300026752SoilLPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADRRGIRPDRIAWFQFSLDALLITGIVTASGG
Ga0209900_101809113300026888Groundwater SandLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFSMAVLGGAAACLVLPLGERRGVPLE
Ga0209073_1011045223300027765Agricultural SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPHAFGPFGTIVLGGAAACLLLPLAERWGASPERIAWVQFALD
Ga0209074_1021290323300027787Agricultural SoilLPKLQVLQSSLWGLNRARLLTAAIVLAVGALLRFTDAFPYAFGPFSLIVLGGVAACLVLPVAERLSVRSDHIAWFQFSLDAVLITAIVTESGGP
Ga0209180_1001036753300027846Vadose Zone SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGAFALTVLGAAAACLVLPLGDRRGVPMERI
Ga0209701_10003846103300027862Vadose Zone SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGAFALTVLGAAAACLVLPLGDRRGVPMERIAWFQFGLDAVFIKAI
Ga0209701_1003087743300027862Vadose Zone SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVFGGIAACLVLPVADRWEIRPARIAWFQFALDAVLITAIVTE
Ga0209860_104147223300027949Groundwater SandLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTMTVLGGAAACLLLPLAERWDARPERI
(restricted) Ga0233418_1005032213300027995SedimentLPKSPALRPSLWGLNRARLLTAAIVLAVGMLLRFAEAFPYALSTFALTVVGGAAGCLVLPLAERRGVP
Ga0268265_1022377013300028380Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPLERIA
Ga0268264_1008787213300028381Switchgrass RhizosphereLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLVLPLGERRGVPLERI
Ga0307313_1018735423300028715SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYPFGTFAMAVLGGAAACLVLPLGERRGVPLQRIAWFQFGVDAILITGIVTATGGPQSVFIPLY
Ga0307504_1002839923300028792SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYTFGPFAMTVLGGAAACLVLPLAERWDARPERIAWFQFGLDALLITGIVTASG
Ga0307504_1011242623300028792SoilLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYTFGTFVMTVLGGAAAGLVLPLGERRGVPLERIAWFQFGLDAVLITGI
Ga0307305_1002297313300028807SoilLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYPFDTFAMTVLGGAAACLVLPLGERRGVPLQRIAWFQFGVDAILITGIVTATGGPQSVF
Ga0307296_1003601213300028819SoilLPKSPALRSSLWGLNRARLLTAAIVVAVGALLRFTEAFPYPFDTFAMTVLGGAAACLVLPLGDRRGVPMERIAWFQFGLDAVFITAIV
Ga0170834_10912164113300031057Forest SoilLPKSQVLRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGPFTLTVLGGVAACLVLPLADRWNIGPERIAWFQFTFDAVL
(restricted) Ga0255312_102733123300031248Sandy SoilLPKSQALRSSLWGLNRARLLTAAIVLAVGALLRITEAFPYAFGPFAVTVLGSAAACLVLP
Ga0308179_101245413300031424SoilLPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYPFGTFAMAVLGGAAACLVLPLGQRRGVPLQRIAWFQFGVDAILITGIVTATGGPQSVFIPLYVLLVVA
Ga0307505_1064518013300031455SoilLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMAVLGGAAACLVLPLGERRGVPLERIAWFQFGLD
Ga0310892_1115327023300031858SoilLPKSQALQSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGRFTLTVLGGIAACLVLPLADRWGMRPERIAWIQFALDAALITAIVTESGGPQSVFI
Ga0310890_1028814523300032075SoilLPKSQALQSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGRFTLTVLGGIAACLVLPLADRWGMRPERIAWIQFALDAALITAIVTESGG
Ga0334722_1039917523300033233SedimentLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFVMAVLGGAAACLVLPLGERRGVPLERIAWFQFGLDAVLITGIITATGGPQSVF
Ga0326726_1051665913300033433Peat SoilLLKSQVLRSSLWGLNRARLLTAAIVLAVGTLLRFTEAFPYAFGRFTLTVLGGVAACLVLPLADRWGIRPERIAWVQFGLDAALITAIVTESGGPQSVFIP
Ga0326732_101405413300033501Peat SoilLLKSQVLRSSLWGLNRARLLTAAIVLAVGTLLRFTEAFPYAFGRFTLTVLGGVAACLVLPLAD
Ga0364931_0200328_404_6493300034176SedimentLPKSPALRSSLWGLNRARLLTAAIVLAVGALLRFTEAFPYAFGTFAMTVLGGAAACLVLPLGERRGVPLERIAWFQFGLDAV
Ga0373948_0128174_1_1743300034817Rhizosphere SoilMPKSPALRSSLWGLNRARLLTAVIVLAVGALLRFTEAFPYAFGTFVVTVLGGAAAGLV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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