Metagenome / Metatranscriptome Family F087823

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087823
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	56 residues
Representative Sequence	MKAIHDQSDAQIEQLRQKGREQIRAILTTEQKPKFEEFLQKLDEERKRNAPK
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.27 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.818 % of family members)
Environment Ontology (ENVO)	Unclassified (29.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.75% β-sheet: 0.00% Coil/Unstructured: 46.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00107	ADH_zinc_N	45.45
PF16884	ADH_N_2	10.00
PF00436	SSB	6.36
PF13618	Gluconate_2-dh3	1.82
PF02585	PIG-L	0.91
PF07813	LTXXQ	0.91
PF05199	GMC_oxred_C	0.91
PF12708	Pectate_lyase_3	0.91
PF07676	PD40	0.91
PF00180	Iso_dh	0.91
PF13525	YfiO	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	6.36
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	6.36
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.64
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.91
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.91 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.55 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.64 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.82 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.82 %
Unclassified	root	N/A	1.82 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.91 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Unclassified	root	N/A	1.82 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.91 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Unclassified	root	N/A	1.82 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.91 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.91 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Unclassified	root	N/A	1.82 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.91 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.91 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Unclassified	root	N/A	1.82 %
Pseudomonas sp. URIL14HWK12:I10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. URIL14HWK12:I10	0.91 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.91 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10147246	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300001661\|JGI12053J15887_10363621	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300002917\|JGI25616J43925_10100646	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300003350\|JGI26347J50199_1042606	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300003352\|JGI26345J50200_1015152	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005174\|Ga0066680_10216707	All Organisms → cellular organisms → Bacteria → Proteobacteria	1212	Open in IMG/M
3300005332\|Ga0066388_105110028	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300005332\|Ga0066388_105829431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	623	Open in IMG/M
3300005367\|Ga0070667_100281218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1494	Open in IMG/M
3300005450\|Ga0066682_10094134	All Organisms → cellular organisms → Bacteria → Proteobacteria	1874	Open in IMG/M
3300005518\|Ga0070699_100700635	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300005536\|Ga0070697_101455946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	612	Open in IMG/M
3300005555\|Ga0066692_10152219	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300005555\|Ga0066692_10729545	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005764\|Ga0066903_106762199	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005944\|Ga0066788_10041454	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300006163\|Ga0070715_10172640	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300006172\|Ga0075018_10047590	All Organisms → cellular organisms → Bacteria → Proteobacteria	1775	Open in IMG/M
3300006172\|Ga0075018_10764629	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300006176\|Ga0070765_102170845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. URIL14HWK12:I10	518	Open in IMG/M
3300006804\|Ga0079221_11356352	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300006861\|Ga0063777_1262347	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300006954\|Ga0079219_11767272	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300007255\|Ga0099791_10191295	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300007255\|Ga0099791_10280465	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300009038\|Ga0099829_10902254	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300009088\|Ga0099830_10655244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	863	Open in IMG/M
3300009089\|Ga0099828_10888334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300009137\|Ga0066709_100765571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1395	Open in IMG/M
3300009143\|Ga0099792_10627253	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300010043\|Ga0126380_11329349	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300010046\|Ga0126384_10011330	All Organisms → cellular organisms → Bacteria	5563	Open in IMG/M
3300010301\|Ga0134070_10103901	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300010304\|Ga0134088_10518166	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010320\|Ga0134109_10054278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1332	Open in IMG/M
3300010358\|Ga0126370_10306597	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300010360\|Ga0126372_12228131	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010361\|Ga0126378_13061693	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300011120\|Ga0150983_12667742	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300011120\|Ga0150983_13919219	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300011269\|Ga0137392_11464462	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300011271\|Ga0137393_10105429	All Organisms → cellular organisms → Bacteria	2308	Open in IMG/M
3300012189\|Ga0137388_10678416	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300012189\|Ga0137388_10686367	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300012198\|Ga0137364_10520622	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012203\|Ga0137399_10667132	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300012205\|Ga0137362_11247464	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300012349\|Ga0137387_11108023	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012351\|Ga0137386_11113098	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300012357\|Ga0137384_10735138	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300012363\|Ga0137390_11975063	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300012922\|Ga0137394_10131001	All Organisms → cellular organisms → Bacteria → Acidobacteria	2128	Open in IMG/M
3300012922\|Ga0137394_10189550	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300012925\|Ga0137419_11202576	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300012976\|Ga0134076_10471516	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300014150\|Ga0134081_10144706	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300014154\|Ga0134075_10178496	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300015052\|Ga0137411_1211973	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300015054\|Ga0137420_1270574	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300015241\|Ga0137418_10869726	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300018086\|Ga0187769_10114004	All Organisms → cellular organisms → Bacteria → Proteobacteria	1953	Open in IMG/M
3300018433\|Ga0066667_11032122	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300018468\|Ga0066662_10524880	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300018468\|Ga0066662_11219110	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300018482\|Ga0066669_10093195	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2067	Open in IMG/M
3300020170\|Ga0179594_10059388	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300020170\|Ga0179594_10163573	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300020199\|Ga0179592_10403586	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300020579\|Ga0210407_10950076	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300020581\|Ga0210399_10319436	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300021086\|Ga0179596_10549655	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300021171\|Ga0210405_10125429	All Organisms → cellular organisms → Bacteria → Acidobacteria	2028	Open in IMG/M
3300021171\|Ga0210405_10430159	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300021178\|Ga0210408_11300723	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300021401\|Ga0210393_10738244	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300021405\|Ga0210387_10452909	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300021420\|Ga0210394_11553776	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300021433\|Ga0210391_10380225	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300021477\|Ga0210398_11598031	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021478\|Ga0210402_11053937	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300021479\|Ga0210410_10660971	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300021560\|Ga0126371_10042628	All Organisms → cellular organisms → Bacteria	4308	Open in IMG/M
3300021855\|Ga0213854_1228419	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300022532\|Ga0242655_10229185	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026291\|Ga0209890_10058844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1401	Open in IMG/M
3300026496\|Ga0257157_1103026	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300026515\|Ga0257158_1042896	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300026515\|Ga0257158_1116302	Not Available	535	Open in IMG/M
3300026551\|Ga0209648_10784110	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300026557\|Ga0179587_10474546	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300027629\|Ga0209422_1121981	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300027655\|Ga0209388_1190921	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300027667\|Ga0209009_1173394	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300027671\|Ga0209588_1016361	All Organisms → cellular organisms → Bacteria → Acidobacteria	2289	Open in IMG/M
3300027825\|Ga0209039_10083810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1389	Open in IMG/M
3300027846\|Ga0209180_10775031	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300027855\|Ga0209693_10243281	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300027862\|Ga0209701_10484986	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300027862\|Ga0209701_10488955	Not Available	670	Open in IMG/M
3300027875\|Ga0209283_10000410	All Organisms → cellular organisms → Bacteria → Acidobacteria	21603	Open in IMG/M
3300027875\|Ga0209283_10388268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300028906\|Ga0308309_11786622	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300029636\|Ga0222749_10248189	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300029636\|Ga0222749_10763786	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031820\|Ga0307473_11173284	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031823\|Ga0307478_11322090	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031823\|Ga0307478_11469631	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031910\|Ga0306923_11698896	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031962\|Ga0307479_10028876	All Organisms → cellular organisms → Bacteria → Proteobacteria	5280	Open in IMG/M
3300032091\|Ga0318577_10287556	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.64%
Aquatic	Environmental → Aquatic	5.45%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.64%
Freshwater	Environmental → Aquatic → Freshwater	3.64%
Sediment	Environmental → Aquatic → Sediment	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.27%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.82%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006861	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101472462	3300001661	Forest Soil	EAKTIHEQTDAQIEQVRQKGRDQVRAILTPEQKPKFEEFLKNLDQQRKRNGSK*
JGI12053J15887_103636212	3300001661	Forest Soil	AAKVIHDQTDAQLEQVHKNGRDHIRAILTPEQKPKFEEFLKNLDQQRKRNSPK*
JGI25616J43925_101006462	3300002917	Grasslands Soil	QSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDEEKKRNEQR*
JGI26347J50199_10426061	3300003350	Bog Forest Soil	TILTQVHAQYKTLHEQSDAQMNDARQKGRDQIRAILTADQKPKFEEFLKKIDEERKKNGPPPPPR*
JGI26345J50200_10151521	3300003352	Bog Forest Soil	KALHEQSDAQMNDARQKGRDQIRAILTADQKPKFEEFLKKIDEERKKNGPPPPPR*
Ga0066680_102167072	3300005174	Soil	DTVGQFKTIRKQIEPQMAVVREKGRNQIRAILTPEQRPKFEDFLKRLDEEKKRNEQ*
Ga0066388_1051100282	3300005332	Tropical Forest Soil	RRHGETKAIRDQSDAQVEAIRQKGRAEVRSILTPDQLPKFEDFLKRLDEERKRNPVPQR*
Ga0066388_1058294312	3300005332	Tropical Forest Soil	LMQWHAETKAIRDKEDAELDQSRQKGRNQVRAILTPEQLPKFEEFLKRIDEERKRNVPPRRP*
Ga0070667_1002812184	3300005367	Switchgrass Rhizosphere	QLHAEYKNLHDQNDAKIDQARQQGRNRIREMLTPDQKPKFEEFLKRMDEERKRNPPPPR*
Ga0066682_100941343	3300005450	Soil	TSVQAQYKAIHQSTDPQINEARLKGRELIRAILTPEQKPKFEEFLKRLDEERKRNAQQ*
Ga0070699_1007006352	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TKVRAEITAIREQIDPQVNQARQKGRNQIRAILTPEQKPKFEDLITRIDEERKRNAASRPR*
Ga0070697_1014559461	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LQWHAETKAIHDQSDAQIESIRQKGRAQVRAILTPEQVPKFEELLKRKDEERRRNGPPRPQ*
Ga0066692_101522191	3300005555	Soil	SQAQQLDAILLRLHTEAKGVHDQSDAQLGHVRQKGRDEIRTILTPEQKPKFEEFLRRLDEQKKRTGPK*
Ga0066692_107295452	3300005555	Soil	QFKTIRKQIEPQMAVVREKGRNQIRAILAPEQKLKFEDFLKRLDEEKKRNEQ*
Ga0066903_1067621991	3300005764	Tropical Forest Soil	KAIHDQSDTLLDQNRQKGRDQVRAILTPEQKPKFEEFLAKQDAQRKRNALHPPH*
Ga0066788_100414543	3300005944	Soil	ALREQADAQIDQARQKGRNQIRGILTSEQKPAFEEFLKKMDEERKRNGPPPER*
Ga0070715_101726402	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	HDQADAQIDTIRNKGRDEVRAILSADQKPKFEEFLRRLDEERKRSGNPPPGR*
Ga0075018_100475901	3300006172	Watersheds	QSTDPQINEARQKGREQIRAILTPEQKPKFEDFLKRIDEERKRNAPQ*
Ga0075018_107646292	3300006172	Watersheds	LLERHTEVKAIHDQTDAQIDQVRQKGRDQIRTILTAEQKPKFEDFLRELDQKRKHGGSK*
Ga0070765_1021708451	3300006176	Soil	LDKALSQLHGDYKAIHDQSEAQMDQARQKGRDQIRAFLTPEQRPKFEEFLRHMDEERKRNMPPQPR*
Ga0079221_113563522	3300006804	Agricultural Soil	LLKWHGQVKAIHDQSDAQTEQLRQKGRDEVRAILTPEQKPKFEEFLQKLDAERKHNAPVNR*
Ga0063777_12623471	3300006861	Peatlands Soil	AIHDQCDVQLDQVHQKGRDQIRAILTPEQKPAFEEFLKNLDQQKKHNGSK*
Ga0079219_117672722	3300006954	Agricultural Soil	RQLDAILMQRHAEVKTIRDQSDAQLDQVRQRGRDQIRTILTPQQKPKFEEFLKKMDEERKRNAPR*
Ga0099791_101912951	3300007255	Vadose Zone Soil	SVQAQYKTIRQSTEPQINEARQKGREQIRAILTPYQKPKFEEFLKRLDEEKKRNGQ*
Ga0099791_102804652	3300007255	Vadose Zone Soil	EAKAIHDQADAQLDQVHQKGREQIRTILTPEQRPKFEEFLKDLDQQKKRNGAK*
Ga0099829_109022541	3300009038	Vadose Zone Soil	QRHAETKAIHEQADAQLDAVRQKGRAQMRAVLTVDQVPKFEEFLKRMDEERKRNGPPPLR
Ga0099830_106552441	3300009088	Vadose Zone Soil	RHAESKTIRDQSDLQVDQVRQKGREQIRAILTAEQKPKFEEFLKRLDEERKHKAPAPH*
Ga0099828_108883342	3300009089	Vadose Zone Soil	QWHAEVKMVHQQSDAQIEQLRQKGRNQIRAILTPGQKPKFEEFLTKLDAERKQHAPK*
Ga0066709_1007655712	3300009137	Grasslands Soil	MKAIHDQSDAQIEQLRQKGREQIRAILTTEQKPKFEEFLQKLDEERKRNAPK*
Ga0099792_106272531	3300009143	Vadose Zone Soil	ILLHWHGETKAIHDQTDVQIEAIRQKGRNEVRAILTSEQKPKFEEFLKRLDEERKRNGPPPGR*
Ga0126380_113293492	3300010043	Tropical Forest Soil	AILLQRHTEVKAIRDNSDAQVEQQRQKGREQIRAILAPEQKPKFEEFLRKLDEERKKNAPSR*
Ga0126384_100113301	3300010046	Tropical Forest Soil	EMKAIRDQAEAQVEQQRQKGREQIRAILTPEQKPKFEEFLQKLDAERKHNAPR*
Ga0134070_101039012	3300010301	Grasslands Soil	LDAILLRLHTEAKGVHDQSDAQLGHVRQKGRDEIRAILTPEQKPKFEEFLRRLDEQKKRTGPK*
Ga0134088_105181662	3300010304	Grasslands Soil	QAQYKAVRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDDERKKNAQ*
Ga0134109_100542783	3300010320	Grasslands Soil	KTIRDQSDAQLDQVRQKGRDQIRAILTPEQKPNFEEFLKKMDEEKKRNAPK*
Ga0126370_103065972	3300010358	Tropical Forest Soil	DAIILQRHTESKAIHEKADDQLEQVRQGGRDQIRAILTPEQKPKFEEFLAKQDAQRKRNALHPPH*
Ga0126372_122281312	3300010360	Tropical Forest Soil	DAILLQRHTEVRAIRDNSDAQVEQQRQKGREQIRAILAPEQKPKFEEFLRKLDEERKKNAPRGNSYR*
Ga0126378_130616931	3300010361	Tropical Forest Soil	HTEVKAMHEQSDAQFEQERQKGRDQIRAILTPEQKPKFEEFLQKLDAERKHNPPR*
Ga0150983_126677422	3300011120	Forest Soil	EYKVIRQSTEPQIDQARQKGREQIRAILTPEQKPKFEEFLKRLDEERKKNPQ*
Ga0150983_139192191	3300011120	Forest Soil	QRHAEAKAIREQTDAQIEQVRQKGRDQVRAILTPEQKPQFEEFLNKLDAERKRKGSK*
Ga0137392_114644621	3300011269	Vadose Zone Soil	LHTEAKGVHDQSDAQLGHVRQKGRDEIRAILTPEQKPKFEEFLRRLDEQKKRAGPK*
Ga0137393_101054294	3300011271	Vadose Zone Soil	GVHDQSDAQLGHVRQKGRDEIRAILTPEQKPKFEEFLRRLDEQKKRAGPK*
Ga0137388_106784161	3300012189	Vadose Zone Soil	QFKTIRKQIEPQMAVVREKGRNQIRAILTPEQKPKFEDFLKRLDVEKKKHEQ*
Ga0137388_106863671	3300012189	Vadose Zone Soil	QYKTIRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDDERKRSAQ*
Ga0137364_105206222	3300012198	Vadose Zone Soil	HDQTDAQFEQIRQKGRDQLRAVLTPEQKPTFEEFLKNLDQQRKRNSLK*
Ga0137399_106671323	3300012203	Vadose Zone Soil	QSQQVDAVLLQRHTEAKAIHDQADAQLDQVHQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRSGSK*
Ga0137362_112474642	3300012205	Vadose Zone Soil	VLLQRHTEAKAIHDQADAQLDQVHQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRSGSK
Ga0137387_111080232	3300012349	Vadose Zone Soil	ESKAIHDQTDAQLAQVHQKGRDQIRAILTPEQKPRFEEFLKNLDQQKKRNGSK*
Ga0137386_111130981	3300012351	Vadose Zone Soil	VDAILLQRHTESKAIHDQTDAQLAQVHQKGRDQIRAILTPEQKPKFEEFLKNLDQQKKRNGSK*
Ga0137384_107351382	3300012357	Vadose Zone Soil	HEQADVQIAELRQKGRHEVRATLPPEQKPKFEEFLRKLDEARKRNNVK*
Ga0137390_119750631	3300012363	Vadose Zone Soil	SKAIHDQTDAQLAELHQKGRDQIRAILTPEQKPRFEEFLKDLDQQKKRSGSK*
Ga0137394_101310011	3300012922	Vadose Zone Soil	VRQSTEPQINEARQRGREQIRAILTPEQKPKFEEFLKRLDEEKKRSAQ*
Ga0137394_101895503	3300012922	Vadose Zone Soil	VRQSTEPQINEARQRGREQIRAILTPEQKPKFEEFLKRLDVEKKRSAQ*
Ga0137419_112025761	3300012925	Vadose Zone Soil	KAIHDQADAQLDQVHQKGREQIRTILTPEQRSKFEEFLKNLDQQKKRSGSK*
Ga0134076_104715161	3300012976	Grasslands Soil	VQAQYKTIRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDEEKKRNGQ*
Ga0134081_101447062	3300014150	Grasslands Soil	YQSEAQVEELRKKGRDQIRAVLTPEQKPKFEEFLAKLDAERKHNAPR*
Ga0134075_101784961	3300014154	Grasslands Soil	KAIHQSTDPQINEARLKGRELIRAILTPEQKPKFEEFLKRLDEERKRNAQQ*
Ga0137411_12119731	3300015052	Vadose Zone Soil	MASVQAQYKAIRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDDERKRNAQ*
Ga0137420_12705741	3300015054	Vadose Zone Soil	AIQSHSAQYKAIRQSAEPQVNEARQKGWEQIRAILTPEQKPKFEEFLKRLDEERKRREQ*
Ga0137418_108697261	3300015241	Vadose Zone Soil	DAVLLQRHTEAKAIHDQADAQLDQVHQKGREQIRTILTPEQRSKFEEFLKNLDQQKKRSGSK*
Ga0187769_101140041	3300018086	Tropical Peatland	AELKSVRDQSDAQVEQIRQKGRDQVRAILTPEQKPQFEKFLRNLDEQRKRNAQR
Ga0066667_110321221	3300018433	Grasslands Soil	DTILLQKHTEAKAVHDQADAQLDQVHQKGRDDIRAILSPEQKPKFEEFLKNLDDQRKRNSSK
Ga0066662_105248802	3300018468	Grasslands Soil	AILLRLHTEAKGVHDQSDAQLGHVRQKGRDEIRAILTPEQKPKFEEFLRRLDEQKKRAGP
Ga0066662_112191101	3300018468	Grasslands Soil	IRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDEEKKRNGQ
Ga0066669_100931953	3300018482	Grasslands Soil	LMQRHAEVKTIRDQSDAQLDLVRQKGRDQIRAILTPEQKPNFEEFLKKMDEEKKRNAPK
Ga0179594_100593881	3300020170	Vadose Zone Soil	KTIRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDEEKKRNGQ
Ga0179594_101635731	3300020170	Vadose Zone Soil	KAIHDQADAQLDQVHQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRSGSK
Ga0179592_104035861	3300020199	Vadose Zone Soil	KSIRKQVDPQLEDARQRGRNQIRAILTPDQKPKFEEFLKRLDEERKKNAQ
Ga0210407_109500762	3300020579	Soil	YKSIHDQSNQQLNSSMDQARQKGRDQIRAILTPEQKPKFEEFVRRIDEERKRNAPPPPR
Ga0210399_103194361	3300020581	Soil	DAKTIHDQMDAQLDQVHKKGRDQIRAVLTAEQKPKFEEFLKRLDAEKKKNAK
Ga0179596_105496552	3300021086	Vadose Zone Soil	ADAQLDQVRQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRNNPSAVSPR
Ga0210405_101254293	3300021171	Soil	AKNIHDQSDAQLAEVHQKGRDQIRAILMPEQKPKFEEFLKNLDEQKKRNGAK
Ga0210405_104301592	3300021171	Soil	KVIRQSTEPQIDQARQKGREQIRAILTPEQKPKFEEFLKRLDEERKKNPQ
Ga0210408_113007231	3300021178	Soil	TIHDQTDAQIEQIRQKGRDQVRAILTLEQKPKFEEFLRNLDAQRKHNAQNK
Ga0210393_107382441	3300021401	Soil	QSNQQLNSRMDQAHQKGRDQIRAILTPEQKPKFEEFLKRLDEERKRNAPPPPH
Ga0210387_104529092	3300021405	Soil	DYKAIHDQSEAQMDQARQKGRDQIRAFLTPEQRPKFEEFLRHMDEERKRNMPPQPR
Ga0210394_115537762	3300021420	Soil	DSTLSQLHAQYKVIHDQSDAQTEQARQKGRDQIRAFLTPEQKPKFEEFLRHMDEERKRNAPPPR
Ga0210391_103802251	3300021433	Soil	SQLHAQYKAIHDQSDAQTEQARQKGRDQIRAFLTPEQKPKFEEFLKRLDEERKRNAPPPR
Ga0210398_115980312	3300021477	Soil	EVILTQLHAEYKAVHEQSDAQIDQARQKSRNQIRAILTPEQKPKFEEFLRKMDEERKRNAPPPDR
Ga0210402_110539372	3300021478	Soil	QINAIMITVQGQYKAIHEVEEPKIDAARQSGREQIRALLTADQKPKFEEFLKRLDEERKRNAPH
Ga0210410_106609711	3300021479	Soil	TIHDQLDAKLDQVHQNGRNQIRAVLTAEQKPKFEEFLKRLDSEKKKNAR
Ga0126371_100426281	3300021560	Tropical Forest Soil	KQLDAILLQRHTESKAIHDQSDAQLDQNRQKGRDQVRAILTPEQKPKFEEFLARMDAQRKRNPSQAAH
Ga0213854_12284192	3300021855	Watersheds	LLERHTEVKAIHDQTDVQIDQVRQKGRDQIRTILTAEQKPKFEDFLRELDQKRKHGGSK
Ga0242655_102291851	3300022532	Soil	DQSNQQLNSRMDQARQKGRDQIRAILTPEQKPKFEEFLRRIDEERKRNAAAAPR
Ga0209890_100588441	3300026291	Soil	KALREQADAQIDQARQKGRNQIRGILTSEQKPAFEEFLKKMDEERKRNGPPPER
Ga0257157_11030262	3300026496	Soil	AEAKAIHDQTDAQLEQAHQKGREQIRAILTPEQKPKFEEFLNRLDEERKRREPK
Ga0257158_10428961	3300026515	Soil	LLQRHTEAKAIHDQTDAQIEQIRQKGRDQVRAILTPEQKPKFEDFLKNLDQQKKRDGSK
Ga0257158_11163021	3300026515	Soil	ALREQNDAQIDEARQKGRNQIRALLTPDQKPKFEAYLKRMDEERKRNQPPPER
Ga0209648_107841101	3300026551	Grasslands Soil	ILLQRHAETKTIHDQSEAEIEAVRQKGRAQVRAILTADQLPKFEEFLKQMDEQRKRNGPPPPR
Ga0179587_104745461	3300026557	Vadose Zone Soil	EAIMVSVQGQYKAIRQSSEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDDERKRNA
Ga0209422_11219811	3300027629	Forest Soil	IDSILLQRHTETKAIHDQLDAQMNQVREKGRAQVRTILTPEQLPKFETFLKRMDEERKRNALAPRQ
Ga0209388_11909211	3300027655	Vadose Zone Soil	EAIIASVQAQYKTIRQSTEPQINEARQKGREQIRAILTPYQKPKFEEFLKRLDEEKKRNG
Ga0209009_11733942	3300027667	Forest Soil	YKSIHDQSDVQMEQARQKGRDQIRAILTPEQKPKFEEFLKRLDEERKRNQPPPPQR
Ga0209588_10163611	3300027671	Vadose Zone Soil	HDQADAQLEQVHQRGRGQIRAILTPEQKPKFEEFLKDLDQQKKRNGAK
Ga0209039_100838102	3300027825	Bog Forest Soil	HDQSDAQMEQAKQKGRDQIRAILTPEQKPKFEEFLKRLDEERKKNQPPPPPR
Ga0209180_107750311	3300027846	Vadose Zone Soil	SQQVDAVLLQRHTEAKAIHDQADAQLDQVRQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRSGSK
Ga0209693_102432811	3300027855	Soil	VQSEYKVIRQSTEPQIDQARQKGREQIRAILTPEQKPKFEEFLKRLDEERKKNPQ
Ga0209701_104849862	3300027862	Vadose Zone Soil	RHTEAKAIHDQADAQLDQVRQKGREQIRTILTPEQRPKFEEFLKNLDQQKKRSGSK
Ga0209701_104889552	3300027862	Vadose Zone Soil	DRHAESKTIRDQSDLQVDQVRQKGREQIRAILTAEQKPKFEEFLKRLDEERKHKAPAPH
Ga0209283_1000041020	3300027875	Vadose Zone Soil	IRQSTEPQINEARQKGREQIRAILTPEQKPKFEEFLKRLDEERKRNAQ
Ga0209283_103882681	3300027875	Vadose Zone Soil	QWHAEVKMVHQQSDAQIEQLRQKGRNQIRAILTPGQKPKFEEFLTKLDAERKQHAPK
Ga0308309_117866221	3300028906	Soil	LDKALSQLHGDYKAIHDQSEAQMDQARQKGRDQIRAFLTPEQRPKFEEFLRHMDEERKRNMPPQPR
Ga0222749_102481891	3300029636	Soil	ILMQRHAETKAIHDQTDAQIDAVRQKGRAQVRAILTPEQLPKFEDFLKRVDEERKRNGPPPGR
Ga0222749_107637861	3300029636	Soil	LKHHTEAKNVRDQSDAQLEQIRQKGRDQIRAVLTAEQKPKFEEFLKNLDEQRKHGGSK
Ga0307473_111732841	3300031820	Hardwood Forest Soil	GRHTEVKSIHDQSDAQLEQVRQKGRDQIRGILTPEQKPKFEEFLQKLDAERKHNAPR
Ga0307478_113220902	3300031823	Hardwood Forest Soil	TEAKNIHDQTDAQLEQVHQRGRDQIRAILSAEQKPKFEEFLKNLDEQKKRSGSK
Ga0307478_114696311	3300031823	Hardwood Forest Soil	TKAIHDQTEAQLDAVRQKGRAQVRAILTPEQLPKFEEFLKQMDEERKRNGPQPPPR
Ga0306923_116988962	3300031910	Soil	EWHGNVKAIHDQSDAQIAQLRQKGRDQMRAILTPEQKPKLEEFLRKMDEERRHNIPK
Ga0307479_100288766	3300031962	Hardwood Forest Soil	DQMDAQLEQVHKKGRDQIRAVLTPEQKPKFEEFLKNLDEQRKRSGSK
Ga0318577_102875563	3300032091	Soil	EMKAMHEQFDAQIELEHQKGRDQIRAILTPEQKPKFEEFLRKSDAQRKRNAPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences