Metagenome / Metatranscriptome Family F087802

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087802
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	MAKFKPVRPKKAKTPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.45 %
% of genes near scaffold ends (potentially truncated)	21.82 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (14.546 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.67% β-sheet: 0.00% Coil/Unstructured: 65.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01138	RNase_PH	47.27
PF03725	RNase_PH_C	18.18
PF01725	Ham1p_like	6.36
PF07690	MFS_1	6.36
PF00575	S1	1.82
PF04977	DivIC	1.82
PF00312	Ribosomal_S15	1.82
PF08808	RES	0.91
PF00486	Trans_reg_C	0.91
PF03091	CutA1	0.91
PF13231	PMT_2	0.91
PF00326	Peptidase_S9	0.91
PF07586	HXXSHH	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	65.45
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	65.45
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	65.45
COG0127	Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase family	Nucleotide transport and metabolism [F]	6.36
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	1.82
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	1.82
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	1.82
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.91
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.36 %
Unclassified	root	N/A	40.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17.27 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	7.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	5.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.73 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	5.45 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.73 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2.73 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4.55 %
Curtobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium	2.73 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.73 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
unclassified Candidatus Solibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4.55 %
unclassified Curtobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium	2.73 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.73 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4.55 %
Curtobacterium sp. ER1/6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	2.73 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.73 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10003615	All Organisms → cellular organisms → Bacteria	11046	Open in IMG/M
3300004114\|Ga0062593_102471648	Not Available	587	Open in IMG/M
3300004114\|Ga0062593_103253769	Not Available	521	Open in IMG/M
3300004477\|Ga0068971_1268286	Not Available	529	Open in IMG/M
3300005172\|Ga0066683_10354489	Not Available	910	Open in IMG/M
3300005338\|Ga0068868_100467078	Not Available	1100	Open in IMG/M
3300005434\|Ga0070709_10691512	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300005434\|Ga0070709_10743272	Not Available	766	Open in IMG/M
3300005440\|Ga0070705_100509585	Not Available	915	Open in IMG/M
3300005445\|Ga0070708_100018242	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5872	Open in IMG/M
3300005458\|Ga0070681_10002851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15976	Open in IMG/M
3300005471\|Ga0070698_100708540	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300005518\|Ga0070699_100254391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1570	Open in IMG/M
3300005518\|Ga0070699_102041747	Not Available	524	Open in IMG/M
3300005533\|Ga0070734_10001716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30196	Open in IMG/M
3300005534\|Ga0070735_10319646	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	934	Open in IMG/M
3300005534\|Ga0070735_10838282	Not Available	541	Open in IMG/M
3300005538\|Ga0070731_10488174	Not Available	820	Open in IMG/M
3300005541\|Ga0070733_10932722	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005542\|Ga0070732_10099623	All Organisms → cellular organisms → Bacteria → Acidobacteria	1712	Open in IMG/M
3300005542\|Ga0070732_10839823	Not Available	560	Open in IMG/M
3300005545\|Ga0070695_101560502	Not Available	550	Open in IMG/M
3300005546\|Ga0070696_101425631	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300005557\|Ga0066704_10160717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1510	Open in IMG/M
3300005719\|Ga0068861_100890104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	842	Open in IMG/M
3300005764\|Ga0066903_103877971	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300006059\|Ga0075017_100646612	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300006162\|Ga0075030_100185417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1678	Open in IMG/M
3300006163\|Ga0070715_10525091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	682	Open in IMG/M
3300006174\|Ga0075014_100741486	Not Available	575	Open in IMG/M
3300006871\|Ga0075434_100197744	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300009089\|Ga0099828_10227684	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300009089\|Ga0099828_11881938	Not Available	525	Open in IMG/M
3300009090\|Ga0099827_12013643	Not Available	501	Open in IMG/M
3300010047\|Ga0126382_10740149	Not Available	830	Open in IMG/M
3300010361\|Ga0126378_13168981	Not Available	523	Open in IMG/M
3300010379\|Ga0136449_100075058	All Organisms → cellular organisms → Bacteria	7197	Open in IMG/M
3300010379\|Ga0136449_100221283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3561	Open in IMG/M
3300010379\|Ga0136449_101121666	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300010379\|Ga0136449_101323283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	1121	Open in IMG/M
3300010379\|Ga0136449_103830615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	565	Open in IMG/M
3300011269\|Ga0137392_11535103	Not Available	525	Open in IMG/M
3300011270\|Ga0137391_10235545	All Organisms → cellular organisms → Bacteria → Acidobacteria	1588	Open in IMG/M
3300012202\|Ga0137363_11754918	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300012203\|Ga0137399_11144729	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300012205\|Ga0137362_10619565	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300012918\|Ga0137396_11253367	Not Available	518	Open in IMG/M
3300012955\|Ga0164298_10366792	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300012960\|Ga0164301_11079776	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300014638\|Ga0181536_10009392	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	9246	Open in IMG/M
3300014969\|Ga0157376_13033466	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	508	Open in IMG/M
3300017822\|Ga0187802_10027741	All Organisms → cellular organisms → Bacteria → Acidobacteria	1992	Open in IMG/M
3300017823\|Ga0187818_10014406	All Organisms → cellular organisms → Bacteria → Acidobacteria	3378	Open in IMG/M
3300017932\|Ga0187814_10020857	All Organisms → cellular organisms → Bacteria	2469	Open in IMG/M
3300017932\|Ga0187814_10029586	All Organisms → cellular organisms → Bacteria → Acidobacteria	2040	Open in IMG/M
3300017943\|Ga0187819_10047765	All Organisms → cellular organisms → Bacteria → Acidobacteria	2539	Open in IMG/M
3300017955\|Ga0187817_10720071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300017972\|Ga0187781_10022051	All Organisms → cellular organisms → Bacteria → Acidobacteria	4426	Open in IMG/M
3300017973\|Ga0187780_10500010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	868	Open in IMG/M
3300017973\|Ga0187780_10909336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300018034\|Ga0187863_10674113	Not Available	583	Open in IMG/M
3300018086\|Ga0187769_10700528	Not Available	766	Open in IMG/M
3300018433\|Ga0066667_10575710	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300020579\|Ga0210407_10004819	All Organisms → cellular organisms → Bacteria → Acidobacteria	10548	Open in IMG/M
3300021088\|Ga0210404_10587533	Not Available	632	Open in IMG/M
3300021170\|Ga0210400_10983978	Not Available	686	Open in IMG/M
3300021401\|Ga0210393_11501146	Not Available	536	Open in IMG/M
3300021406\|Ga0210386_10933649	Not Available	742	Open in IMG/M
3300021407\|Ga0210383_11076887	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300021420\|Ga0210394_11509073	Not Available	568	Open in IMG/M
3300021432\|Ga0210384_10819056	Not Available	829	Open in IMG/M
3300021433\|Ga0210391_11358781	Not Available	547	Open in IMG/M
3300021476\|Ga0187846_10311067	All Organisms → cellular organisms → Bacteria → Acidobacteria	651	Open in IMG/M
3300024290\|Ga0247667_1086564	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300025906\|Ga0207699_10391938	Not Available	988	Open in IMG/M
3300025912\|Ga0207707_10013090	All Organisms → cellular organisms → Bacteria → Acidobacteria	7227	Open in IMG/M
3300027497\|Ga0208199_1000690	All Organisms → cellular organisms → Bacteria → Acidobacteria	13030	Open in IMG/M
3300027826\|Ga0209060_10001339	All Organisms → cellular organisms → Bacteria → Acidobacteria	27780	Open in IMG/M
3300027842\|Ga0209580_10019862	All Organisms → cellular organisms → Bacteria	2980	Open in IMG/M
3300027842\|Ga0209580_10074181	All Organisms → cellular organisms → Bacteria → Acidobacteria	1618	Open in IMG/M
3300027842\|Ga0209580_10227158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	927	Open in IMG/M
3300027869\|Ga0209579_10316304	Not Available	842	Open in IMG/M
3300027875\|Ga0209283_10599767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	698	Open in IMG/M
3300027898\|Ga0209067_10890716	Not Available	522	Open in IMG/M
3300031715\|Ga0307476_10043830	All Organisms → cellular organisms → Bacteria → Acidobacteria	3028	Open in IMG/M
3300031716\|Ga0310813_10359141	Not Available	1243	Open in IMG/M
3300031718\|Ga0307474_11191156	Not Available	602	Open in IMG/M
3300031720\|Ga0307469_11729921	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300031754\|Ga0307475_11210626	Not Available	588	Open in IMG/M
3300031823\|Ga0307478_11764434	Not Available	509	Open in IMG/M
3300031962\|Ga0307479_10241612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1782	Open in IMG/M
3300032160\|Ga0311301_10554836	All Organisms → cellular organisms → Bacteria → Acidobacteria	1678	Open in IMG/M
3300032160\|Ga0311301_11768141	Not Available	739	Open in IMG/M
3300032160\|Ga0311301_12738304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	541	Open in IMG/M
3300032770\|Ga0335085_11073032	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300032783\|Ga0335079_10029552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6286	Open in IMG/M
3300032783\|Ga0335079_10187532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2301	Open in IMG/M
3300032783\|Ga0335079_10209986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2157	Open in IMG/M
3300032783\|Ga0335079_10835600	Not Available	951	Open in IMG/M
3300032783\|Ga0335079_11018914	Not Available	843	Open in IMG/M
3300032805\|Ga0335078_10376783	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1873	Open in IMG/M
3300032805\|Ga0335078_11533705	Not Available	742	Open in IMG/M
3300032828\|Ga0335080_10698754	All Organisms → cellular organisms → Bacteria → Acidobacteria	1057	Open in IMG/M
3300032828\|Ga0335080_11143735	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300032828\|Ga0335080_12399212	Not Available	503	Open in IMG/M
3300032892\|Ga0335081_10508922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1512	Open in IMG/M
3300032897\|Ga0335071_11147102	Not Available	723	Open in IMG/M
3300032898\|Ga0335072_10655475	Not Available	1040	Open in IMG/M
3300033004\|Ga0335084_11323723	Not Available	716	Open in IMG/M
3300033158\|Ga0335077_11188692	Not Available	747	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Host-Associated	Host-Associated	3.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.45%
Aquatic	Environmental → Aquatic	10.91%
Plants	Host-Associated → Plants	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.55%
Freshwater	Environmental → Aquatic → Freshwater	7.27%
Sediment	Environmental → Aquatic → Sediment	3.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Cave	Environmental → Terrestrial → Cave	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.18%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	14.55%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	10.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100036152	3300000567	Peatlands Soil	MAKFKPVRPKKAKTPQVQGGLPCVILLFVGIAILFVVMFLVLKYANG*
Ga0062593_1024716482	3300004114	Soil	GLSMAKFKPVRPKKEKVPQVQGGVPCLVLMFSAMVLVGIVMYLVLKYANG*
Ga0062593_1032537692	3300004114	Soil	MAKFKPVRPKKAKTPQVQGGVPCLILVFAAMVMVFVVMYLVLKYASG*
Ga0068971_12682861	3300004477	Peatlands Soil	HTAMAKFKPVRPKKAKTPQVQGGLPCVILLFVGIAILFVVMFLVLKYANG*
Ga0066683_103544891	3300005172	Soil	MAKFKPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0068868_1004670782	3300005338	Miscanthus Rhizosphere	MAKFKLAKPKKAKAPQVQGGLPCLILLFTAMVLVGILMFLVLKYANG*
Ga0070709_106915122	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKEKVPQVQGGVPCLIVMFSAMVLVGIVMYLVLKYANG*
Ga0070709_107432722	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKAKTPPVQGGLPCLIIIFLIMAVVFAVMFLVLKYANG*
Ga0070705_1005095851	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKAKTPQVQGGVPCLIVVFAAMVMVFVVMYLVLKYASG*
Ga0070708_1000182428	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKEKVPQVQGGVPCLVLMFSAMVLVGIVMYLVLKYANG*
Ga0070681_1000285115	3300005458	Corn Rhizosphere	MAKFKLAKPKKAKAPRVQGGLPCLILLFTAMVLVGILMFLVLKYANG*
Ga0070698_1007085402	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKEKVPQLQGGVPCLVLMFSAMVLVGIVMYLVLKYANG*
Ga0070699_1002543911	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AGLSMAKFKPVRPKKEKVPQVQGGVPCLVLMFSAMVLVGIVMYLVLKYANG*
Ga0070699_1020417472	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRLKKAKAPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG*
Ga0070734_1000171612	3300005533	Surface Soil	MAKFKPVRPKKEKTPHVQGGLPCVILLFIGIAILFLVMYLVLKNAS*
Ga0070735_103196462	3300005534	Surface Soil	MAKFKPVRPKKDKTPQVQGGLPCIILLISAMVFVCVVMYLVLKYANG*
Ga0070735_108382822	3300005534	Surface Soil	MAKFKPVRPKKDKTPQVQGGLPCIILIFVGIAILFVVMYLVLKYANG*
Ga0070731_104881742	3300005538	Surface Soil	MAKFKPVRPKKEKTPQVQGGVPCLILLFSAMILVCIVMYLVLKYANG*
Ga0070733_109327221	3300005541	Surface Soil	MAKFKPVRPKKDKTPQVQGGLPCIILIFVGIAILFVVMYLVLK
Ga0070732_100996232	3300005542	Surface Soil	MAKFKPVRPKKAKTPPVQGGLPCLILLFLVMVLVGVVMFLVLKYANG*
Ga0070732_108398231	3300005542	Surface Soil	MAKFKPVRPKKAKAPQVQGGVPCLILIFSAMVLVGVVMFLVLKYANG*
Ga0070695_1015605022	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKLAKPKKAKTPQVQGGVPCLILMFSGMVLVGILMFLVLKYANG*
Ga0070696_1014256312	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVKPKKAKTPQVQGGVPCLILVFTAMVMVFVVMYLVLKYAGG*
Ga0066704_101607173	3300005557	Soil	MAKFKPVRPKKEKVPQVQGGVPCLILMFSAMVLVGVVMYLVLKYANG*
Ga0068861_1008901041	3300005719	Switchgrass Rhizosphere	SSMAKFKLAKPKKAKTPQVQGGVPCLILMFSGMVLVGILMFLVLKYANG*
Ga0066903_1038779712	3300005764	Tropical Forest Soil	MAKFRPVRPKKEKAPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0075017_1006466122	3300006059	Watersheds	MAKFKPVRPKKAKAPQVQGGVPCLILIFSVMALVGLVMFLVLKYANG*
Ga0075030_1001854174	3300006162	Watersheds	LAGHSMAKFKPVRPKKAKAPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG*
Ga0070715_105250912	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKEKVPQVQGGVPCLILMFAAMVLVGIVMYLVLKYANG*
Ga0075014_1007414861	3300006174	Watersheds	MAKFKPVRPKKAKAPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG*
Ga0075434_1001977442	3300006871	Populus Rhizosphere	MAKFRPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0099828_102276842	3300009089	Vadose Zone Soil	MAKFKPVRPKKAKTPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG*
Ga0099828_118819381	3300009089	Vadose Zone Soil	MAKFKPVRPKKAKTPPVQGGIPCLVAMVIAMMILFLVMYLVLKYANE*
Ga0099827_120136431	3300009090	Vadose Zone Soil	MAKFKPVRPKKDKVPQVQGGVPCLILMFSAMVLVGIVIYLVLKYANG*
Ga0126382_107401491	3300010047	Tropical Forest Soil	PVRPKKEKAPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0126378_131689812	3300010361	Tropical Forest Soil	MAKFKPIRPKKEKAPPVQGGVPCLILLIAGIVAVCILMFLVLKYAGG*
Ga0136449_1000750587	3300010379	Peatlands Soil	MAKFKPVRPKKAKAPQVQGGVPCLILIFSVMAIVGLVMFLVLKYANG*
Ga0136449_1002212834	3300010379	Peatlands Soil	VRPKKDKTPQVQGGLPCVILLFVGIAVLFVVMFLVLKYANG*
Ga0136449_1011216662	3300010379	Peatlands Soil	MAKFKPVRPKKDKAPQVQGGVPCLILLFSAMVLVGIVMFLVLKYANG*
Ga0136449_1013232831	3300010379	Peatlands Soil	MAKFKPVRPKKEKAPQVQGGVPCLILLFSARVLVGVVMFLVLKYANG*
Ga0136449_1038306152	3300010379	Peatlands Soil	MAKFKPVRPKKQKAPQVQGGVPCLILLFSAMVLVGVVMFLVLKYANG*
Ga0137392_115351032	3300011269	Vadose Zone Soil	MAKFKLAKPKKAKTPQVQGGVPCLILMFSAMVLVGILMFLVLKYANG*
Ga0137391_102355452	3300011270	Vadose Zone Soil	MAKFKPVRPKKDKVPQVQGGFPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0137363_117549182	3300012202	Vadose Zone Soil	MAKFKPVRPKKDKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG*
Ga0137399_111447292	3300012203	Vadose Zone Soil	MAKFKPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLV
Ga0137362_106195652	3300012205	Vadose Zone Soil	MAKFRPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYAD
Ga0137396_112533672	3300012918	Vadose Zone Soil	MAKFKPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVL*
Ga0164298_103667922	3300012955	Soil	MAKFKLAKPKKAKAPQVQGGLPSFILLFTAIGLVGILMFL*
Ga0164301_110797762	3300012960	Soil	MAKFKPVRPKKEKVPQVQGGVPCLVLMFTAMVLVGIVMYLVLKYANG*
Ga0181536_100093923	3300014638	Bog	MAKFKPVRPKKTKAPQVQGGVPCLILLFSAMLLVGVVMFLVLKYANG*
Ga0157376_130334662	3300014969	Miscanthus Rhizosphere	MAKFKLAKPKKAKAPQVQGGLPCLILLFTGMVLVGILMFLVLKYANG*
Ga0187802_100277413	3300017822	Freshwater Sediment	MAKFKPVRPKKAKTPPVQGGIPCLIVIFSVMVLVGIVMFLVLKYANG
Ga0187818_100144064	3300017823	Freshwater Sediment	MAKFKPVRPKKAKKPPVQGGIPCLIVIFSVMVLVGIVMFLVLKYANG
Ga0187814_100208572	3300017932	Freshwater Sediment	MAKFKPVRPKKAKKPPVQGGIPCLIVIFSVMVLVGLVMFLVLKYANG
Ga0187814_100295864	3300017932	Freshwater Sediment	LAGRSMAKFKPVRPKKAKTPPVQGGIPCLIVIFSVMVLVGIVMFLVLKYANG
Ga0187819_100477653	3300017943	Freshwater Sediment	MAKFKPVRPKKAKTSPVQGGIPCLILIFSALVVVGLVMFLVLKYANG
Ga0187817_107200711	3300017955	Freshwater Sediment	MAKFKPVRPKKAKTSPVQGGIPCLILIFSAMVVVGLVMFLVLKYANG
Ga0187781_100220515	3300017972	Tropical Peatland	MAKFKPVRPKKAKTPQVQGGWPCIILLISAMVLVCVVMYLVLKYANG
Ga0187780_105000102	3300017973	Tropical Peatland	MAKFKPVRPKKAKTPQVQGGWPCIILLLSAMVLVCVVMYLVLKYANG
Ga0187780_109093362	3300017973	Tropical Peatland	MAKFKPVRPKKAKTPPVQGGIPCLVLIFSVMALVGLVMFMVLKYANG
Ga0187863_106741132	3300018034	Peatland	MAKFKPVRPKKHKTPQVQGGLPCVILLFVGIAVLFVVMFLVLKYANG
Ga0187769_107005282	3300018086	Tropical Peatland	MAKFKPIRPKKAKTPQVQGGWPCIILLLSAMVLVCVVMYLVLKYANG
Ga0066667_105757102	3300018433	Grasslands Soil	MAKFKPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG
Ga0210407_100048195	3300020579	Soil	MAKFKPVRPKKAKAPQVQGGIPCLILIFSAMALVGIVMFLVLKYANG
Ga0210404_105875331	3300021088	Soil	ADHRMAKFKPVRPKKAKAPQVQGGIPCLILIFSAMALVGIVMFLVLKYANG
Ga0210400_109839782	3300021170	Soil	WPALADHRMAKFKPVRPKKAKAPQVQGGIPCLILIFSAMALVGIVMFLVLKYANG
Ga0210393_115011462	3300021401	Soil	MAKFKPVRPKKDKTPQVQGGVPCLILLFSAMVLVGVVMFLVLKYANG
Ga0210386_109336492	3300021406	Soil	KPVRPKKAKAPQVQGGIPCLILIFSAMALVGIVMFLVLKYANG
Ga0210383_110768872	3300021407	Soil	MAKFKPVRPKKDKTPQVQGGLPCIILIFVGIAILFVVMY
Ga0210394_115090732	3300021420	Soil	MAKFKPVRPKKAKAPQVQGGIPCLILIFSAMAVVGIVMFLVLKYANG
Ga0210384_108190562	3300021432	Soil	MAKFKPIRPKKKTTPQVQGGLPCVILLFVGIAVLFVVMYLVLKYANG
Ga0210391_113587812	3300021433	Soil	MAKFKPVRPKKDKTPQVQGGLPCIILIFVGIAILFVVMYLVLKYANG
Ga0187846_103110672	3300021476	Biofilm	MAKFKPVRPKKTKTPQVQGGVPCLILIFAVMALVFVVMFLVLKYANG
Ga0247667_10865641	3300024290	Soil	MAKFRPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLK
Ga0207699_103919382	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFKPVRPKKEKVPQVQGGVPCLIVMFSAMVLVGIVMYLVLKYANG
Ga0207707_100130902	3300025912	Corn Rhizosphere	MAKFKLAKPKKAKAPRVQGGLPCLILLFTAMVLVGILMFLVLKYANG
Ga0208199_100069014	3300027497	Peatlands Soil	MAKFKPVRPKKAKTPQVQGGLPCVILLFVGIAILFVVMFLVLKYANG
Ga0209060_1000133912	3300027826	Surface Soil	MAKFKPVRPKKEKTPHVQGGLPCVILLFIGIAILFLVMYLVLKNAS
Ga0209580_100198622	3300027842	Surface Soil	MAKFKPVRPKKAKAPQVQGGVPCLILIFSAMVLVGVVMFLVLKYANG
Ga0209580_100741812	3300027842	Surface Soil	MAKFKPVRPKKAKTPPVQGGLPCLILLFLVMVLVGVVMFLVLKYANG
Ga0209580_102271582	3300027842	Surface Soil	MAKFKPVRPKKDKTPQVQGGLPCIILLISAMVFVCVVMYLVLKYANG
Ga0209579_103163042	3300027869	Surface Soil	MAKFKPVRPKKEKTPQVQGGVPCLILLFSAMILVCIVMYLVLKYANG
Ga0209283_105997672	3300027875	Vadose Zone Soil	MAKFKPVRPKKAKTPQVQGGVPCLILIFSAMALVGIVMFLVLKYANG
Ga0209067_108907161	3300027898	Watersheds	MAKFKPVRPKKAKAPQVQGGVPCLILIFSVMALVGLVMFLVLKYANG
Ga0307476_100438305	3300031715	Hardwood Forest Soil	MAKFKPVRPKKEKTPQVQGGVPCLILLFSAMLLVGIVMFLVLKYANG
Ga0310813_103591412	3300031716	Soil	MAKFKPVRPKKEKVPQVQGGVPCLVLMFTAMVLVGIVMYLVLKYANG
Ga0307474_111911561	3300031718	Hardwood Forest Soil	KEKTPQVQGGVPCLILLFSAMLLVGIVMFLVLKYANG
Ga0307469_117299212	3300031720	Hardwood Forest Soil	MAKFRPVRPKKEKVPQVQGGVPCLILMFSAMVLVGIVMYLVLKYANG
Ga0307475_112106262	3300031754	Hardwood Forest Soil	MAKFKPVRPKKAKTPQVQGGVPCLILIFSVMVLVGVVMFLVLKYANG
Ga0307478_117644342	3300031823	Hardwood Forest Soil	MAKFKPVRPKKEKTPQVQGGVPCLILLFSAMVLVGIVMFLVLKYANG
Ga0307479_102416123	3300031962	Hardwood Forest Soil	MAKFKPVRPKKAKTPPVQGGLPCLIIIFLVMALVFAVMFLVLKYANG
Ga0311301_105548362	3300032160	Peatlands Soil	MRGPSMAKFKPVRPKKDKAPQVQGGVPCLILLFSAMVLVGIVMFLVLKYANG
Ga0311301_117681412	3300032160	Peatlands Soil	MAKFKPVRPKKAKAPQVQCGVPCLILIFSVMAIVGLVMFLVLKYANG
Ga0311301_127383041	3300032160	Peatlands Soil	ARGPSMAKFKPVRPKKQKAPQVQGGVPCLILLFSAMVLVGVVMFLVLKYANG
Ga0335085_110730322	3300032770	Soil	MAKFKPIRPKKDKTPQVQGGLPCIILLLFAMVLVCVVMYLVLKYANG
Ga0335079_100295523	3300032783	Soil	MAKFKPIRPKKGKTPQVQGGLPCVILLFVGIAILFVVMYLVLKYANG
Ga0335079_101875324	3300032783	Soil	MAKFKPVRPKKAKTPPVQGGIPCLILIFSVMVLVFLVMFLVLKYANG
Ga0335079_102099862	3300032783	Soil	MAKFKPVRPKKSKTPQVQGGLPCVILVFVGIAILFVLMYLVVKYANG
Ga0335079_108356001	3300032783	Soil	MAKFKPVRPKKAKTPPVQGGIPCLILVFSVMALVGIVMFLVLKYANG
Ga0335079_110189142	3300032783	Soil	MAKFKPVRPKKAKAPQVQGGVPCLILIFSAMALVGLVMFLVLKYANG
Ga0335078_103767833	3300032805	Soil	MAKFKPVRPKKSKTPQVQGGLPCVILVFVGIAILFVMMYLVLKYANG
Ga0335078_115337052	3300032805	Soil	MAKFKPVRPKKGKTPQVQGGLPCVILLFVGIAILFVVMYLVLKYANG
Ga0335080_106987543	3300032828	Soil	ATIRSWPALVPMAKFKPVRPKKDKTPQVQGGLPCVILVFVGIALLFLVMYLVLKNANG
Ga0335080_111437351	3300032828	Soil	MAKFKPVRPKKEKTPQVQGGLPCVILLFVGIAILFVVMFLVLKY
Ga0335080_123992121	3300032828	Soil	MAKFKPVRPKKTKAPQVQGGLPCLILIFLAMALVGLVMFLVLKYANG
Ga0335081_105089223	3300032892	Soil	PATIRSWPARACLSMAKFKPVRPKKSKTPQVQGGLPCVILVFVGIAILFVLMYLVVKYAN
Ga0335071_111471022	3300032897	Soil	MAKFKPVRPKKAKTPTVQGGIPCLILVFSVMALVGIVMFLVLKYANG
Ga0335072_106554752	3300032898	Soil	MAKFKPIRPKKDKTPHVQGGLPCVILLFVGIALLFLMMFLVLKYANG
Ga0335084_113237231	3300033004	Soil	RPKKAKAPQVQGGVPCLILIFSVMALVGLVMFLVLKYANG
Ga0335077_111886921	3300033158	Soil	AKTPPVQGGIPCLIVIFSVMVLVGIVMFLVLKYANG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087802

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences