Metagenome / Metatranscriptome Family F087790

Basic Information
Family ID	F087790
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	43 residues
Representative Sequence	MRALLVAGVAVVAVTAPAFAAALAPNEIQATFFNGQPFT
Number of Associated Samples	96
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	87.27 %
% of genes from short scaffolds (< 2000 bps)	77.27 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (63.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.727 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (35.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 46.27% β-sheet: 0.00% Coil/Unstructured: 53.73%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02826	2-Hacid_dh_C	88.18
PF06347	SH3_4	5.45
PF01475	FUR	1.82
PF00551	Formyl_trans_N	0.91
PF13808	DDE_Tnp_1_assoc	0.91
PF07977	FabA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	1.82
COG0764	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	Lipid transport and metabolism [I]	0.91
COG4706	Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain	Lipid transport and metabolism [I]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
All Organisms	root	All Organisms	36.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
cellular organisms	root	All Organisms → cellular organisms	36.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	7.27 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	5.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.55 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.45 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.64 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	5.45 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	5.45 %
Bradyrhizobium yuanmingense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	3.64 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5.45 %
Rhizobium freirei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	5.45 %
Bradyrhizobium yuanmingense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	3.64 %
Mesorhizobium sp. LNJC372A00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNJC372A00	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	5.45 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5.45 %
Bradyrhizobium yuanmingense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	3.64 %
Mesorhizobium sp. LNJC372A00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNJC372A00	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001139\|JGI10220J13317_11662507	Not Available	571	Open in IMG/M
3300001160\|JGI12654J13325_1012609	Not Available	604	Open in IMG/M
3300005332\|Ga0066388_106994139	Not Available	568	Open in IMG/M
3300005456\|Ga0070678_101644717	Not Available	603	Open in IMG/M
3300005547\|Ga0070693_100074215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2011	Open in IMG/M
3300005548\|Ga0070665_100993379	Not Available	851	Open in IMG/M
3300005549\|Ga0070704_100717598	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300005578\|Ga0068854_101266588	Not Available	663	Open in IMG/M
3300005618\|Ga0068864_100145683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2141	Open in IMG/M
3300005713\|Ga0066905_100178241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	1565	Open in IMG/M
3300005764\|Ga0066903_102582647	Not Available	984	Open in IMG/M
3300006163\|Ga0070715_10856054	Not Available	556	Open in IMG/M
3300006177\|Ga0075362_10285649	Not Available	817	Open in IMG/M
3300006603\|Ga0074064_11478267	Not Available	521	Open in IMG/M
3300006605\|Ga0074057_12191437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	536	Open in IMG/M
3300006845\|Ga0075421_102573594	Not Available	529	Open in IMG/M
3300006904\|Ga0075424_100221707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2009	Open in IMG/M
3300006904\|Ga0075424_102764975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300009093\|Ga0105240_12757018	Not Available	506	Open in IMG/M
3300009101\|Ga0105247_10055003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2456	Open in IMG/M
3300009137\|Ga0066709_101587845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	937	Open in IMG/M
3300009553\|Ga0105249_10129583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2406	Open in IMG/M
3300010043\|Ga0126380_11024836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	697	Open in IMG/M
3300010048\|Ga0126373_13176473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	512	Open in IMG/M
3300010396\|Ga0134126_12089762	Not Available	619	Open in IMG/M
3300010403\|Ga0134123_11327101	Not Available	756	Open in IMG/M
3300011269\|Ga0137392_10617310	Not Available	899	Open in IMG/M
3300011269\|Ga0137392_10685586	Not Available	849	Open in IMG/M
3300012189\|Ga0137388_10423471	Not Available	1234	Open in IMG/M
3300012203\|Ga0137399_10222173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNJC372A00	1541	Open in IMG/M
3300012357\|Ga0137384_10670836	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300012914\|Ga0157297_10454298	Not Available	527	Open in IMG/M
3300012924\|Ga0137413_10010792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4469	Open in IMG/M
3300012924\|Ga0137413_11646284	Not Available	526	Open in IMG/M
3300012977\|Ga0134087_10231402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	839	Open in IMG/M
3300013308\|Ga0157375_12804395	Not Available	583	Open in IMG/M
3300015374\|Ga0132255_102522918	Not Available	785	Open in IMG/M
3300015374\|Ga0132255_103990102	Not Available	626	Open in IMG/M
3300016371\|Ga0182034_11871626	Not Available	529	Open in IMG/M
3300016404\|Ga0182037_11192233	Not Available	669	Open in IMG/M
3300018061\|Ga0184619_10008227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4017	Open in IMG/M
3300018082\|Ga0184639_10616948	Not Available	530	Open in IMG/M
3300020579\|Ga0210407_11329200	Not Available	536	Open in IMG/M
3300021080\|Ga0210382_10330747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	672	Open in IMG/M
3300021178\|Ga0210408_10172292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1718	Open in IMG/M
3300021418\|Ga0193695_1108763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	588	Open in IMG/M
3300023072\|Ga0247799_1029048	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300025904\|Ga0207647_10512933	Not Available	668	Open in IMG/M
3300025905\|Ga0207685_10091955	Not Available	1279	Open in IMG/M
3300025929\|Ga0207664_11576480	Not Available	579	Open in IMG/M
3300025932\|Ga0207690_11078524	Not Available	669	Open in IMG/M
3300025939\|Ga0207665_10079070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2260	Open in IMG/M
3300026035\|Ga0207703_11337812	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300026515\|Ga0257158_1125572	Not Available	517	Open in IMG/M
3300027371\|Ga0209418_1016844	Not Available	1200	Open in IMG/M
3300027635\|Ga0209625_1113334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	608	Open in IMG/M
3300028716\|Ga0307311_10249008	Not Available	528	Open in IMG/M
3300028784\|Ga0307282_10032942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	2248	Open in IMG/M
3300028787\|Ga0307323_10152510	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M
3300028875\|Ga0307289_10034382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2003	Open in IMG/M
3300028876\|Ga0307286_10182351	Not Available	758	Open in IMG/M
3300031199\|Ga0307495_10046144	All Organisms → cellular organisms → Bacteria → Proteobacteria	873	Open in IMG/M
3300031469\|Ga0170819_11654112	Not Available	626	Open in IMG/M
3300031544\|Ga0318534_10426149	Not Available	761	Open in IMG/M
3300031544\|Ga0318534_10811300	Not Available	525	Open in IMG/M
3300031561\|Ga0318528_10418394	Not Available	719	Open in IMG/M
3300031564\|Ga0318573_10430453	Not Available	710	Open in IMG/M
3300031573\|Ga0310915_10536901	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300031682\|Ga0318560_10155902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1209	Open in IMG/M
3300031719\|Ga0306917_10888228	Not Available	697	Open in IMG/M
3300031723\|Ga0318493_10409382	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300031764\|Ga0318535_10412372	Not Available	602	Open in IMG/M
3300031764\|Ga0318535_10537809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	518	Open in IMG/M
3300031765\|Ga0318554_10542885	Not Available	657	Open in IMG/M
3300031771\|Ga0318546_11066193	Not Available	568	Open in IMG/M
3300031777\|Ga0318543_10088769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense	1317	Open in IMG/M
3300031777\|Ga0318543_10314479	Not Available	701	Open in IMG/M
3300031780\|Ga0318508_1005169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2707	Open in IMG/M
3300031781\|Ga0318547_10508547	Not Available	744	Open in IMG/M
3300031797\|Ga0318550_10466707	Not Available	610	Open in IMG/M
3300031845\|Ga0318511_10043635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1771	Open in IMG/M
3300031846\|Ga0318512_10619632	Not Available	552	Open in IMG/M
3300031860\|Ga0318495_10412620	Not Available	594	Open in IMG/M
3300031897\|Ga0318520_10125379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1467	Open in IMG/M
3300031897\|Ga0318520_10473990	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300031897\|Ga0318520_10528952	Not Available	729	Open in IMG/M
3300031944\|Ga0310884_10941440	Not Available	534	Open in IMG/M
3300031946\|Ga0310910_10263779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1349	Open in IMG/M
3300031946\|Ga0310910_10851334	Not Available	717	Open in IMG/M
3300032013\|Ga0310906_10832828	Not Available	654	Open in IMG/M
3300032076\|Ga0306924_11646690	Not Available	675	Open in IMG/M
3300032076\|Ga0306924_11817681	Not Available	634	Open in IMG/M
3300032089\|Ga0318525_10680647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	523	Open in IMG/M
3300032091\|Ga0318577_10015533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3081	Open in IMG/M
3300032261\|Ga0306920_102318513	Not Available	743	Open in IMG/M
3300033550\|Ga0247829_11418711	Not Available	574	Open in IMG/M
3300033551\|Ga0247830_11404725	Not Available	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.55%
Host-Associated	Host-Associated	15.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	2.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.36%
Sediment	Environmental → Aquatic → Sediment	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.91%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_07874470	2170459010	Grass Soil	MRASLAAVVTVLAVATPVVAATLTPNEIQAAFFTGQPFTASATNVK
JGI10220J13317_116625072	3300001139	Soil	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQ
JGI12654J13325_10126092	3300001160	Forest Soil	MRAVLLAGVTVIASIAPALAAVLAPADIQATFFNGQPFT
Ga0066388_1069941391	3300005332	Tropical Forest Soil	MRALIVAGAVVVAAIAPALAAVLAPAEIQSTFFNGQPFNSSAKGA
Ga0070678_1016447172	3300005456	Miscanthus Rhizosphere	MRALLVGGVVVVASITPALAAALAPKDIQSTFFNGQPFTS
Ga0070693_1000742151	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRALLVGGVVVVASITPALAAALAPKDIQSTFFNGQPFTSSTMSNVKFKMVF
Ga0070665_1009933792	3300005548	Switchgrass Rhizosphere	MRALLVGGVVVVASITPALAAALAPKDIQSTFFNG
Ga0070704_1007175982	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFTA
Ga0068854_1012665882	3300005578	Corn Rhizosphere	MRALLVGGVVVIASITPALAAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMVFTPDGKM
Ga0068864_1001456831	3300005618	Switchgrass Rhizosphere	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQPFTSSTPSNVKFKMVFT
Ga0066905_1001782413	3300005713	Tropical Forest Soil	MRALLVAGMALLTVATPVVAATLTPNEIQSTFFTGQPFTA
Ga0066903_1025826472	3300005764	Tropical Forest Soil	MRALFVAGVAVMASIAPAVAAVLAPAEIQATFFTGQPFTAS
Ga0070715_108560542	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRALFLAAVAVIAMTAPALAAALAPNEIQSTFFTGQAF
Ga0075362_102856492	3300006177	Populus Endosphere	MRALLVGGVVVVASITPVLAAVLAPKDIQSTFFNGQPFTSSTMSNV
Ga0074064_114782672	3300006603	Soil	MRALLVGGVVVIASITPALAAGLAPKDIQSTFFNGQPFTSST
Ga0074057_121914371	3300006605	Soil	MRALLVAGAVVVASITPALAAVLAPNEIQATFFTGQPFTSSTPS
Ga0075421_1025735941	3300006845	Populus Rhizosphere	MRALLVGGVIVVASIAPALAAVLAPKDIQSTFFNGQPFTSSTMSNV
Ga0075424_1002217073	3300006904	Populus Rhizosphere	MRASLAAVVAILATATPVVAATLTPNEIQATFFTG
Ga0075424_1027649751	3300006904	Populus Rhizosphere	MRALLVAGMAIVAAIAPALAAVLTPTEIQSTFFTGQ
Ga0105240_127570181	3300009093	Corn Rhizosphere	MRALLVGGVVVIASITPALAAALAPKDIQSTFFNGQPFTSSTMSNVKF
Ga0105247_100550031	3300009101	Switchgrass Rhizosphere	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQPFTSSTP
Ga0066709_1015878451	3300009137	Grasslands Soil	MRASLVAVMAALAATTPVVAATLTPNEIQTTFFTGQP
Ga0105249_101295831	3300009553	Switchgrass Rhizosphere	MRALLVGGVVVVASITPALAAVLAPKDIQSTFFNGQP
Ga0126315_109236822	3300010038	Serpentine Soil	MRALFVAAVAILALTTPAFAAALTPNEIQATFFNGQAFTASATNIK
Ga0126380_110248361	3300010043	Tropical Forest Soil	MRTFLGVALAVIALTAPAWAATLEPNEIQSTFFTGQAFTS
Ga0126373_131764731	3300010048	Tropical Forest Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQAAFFTGQP
Ga0134126_120897621	3300010396	Terrestrial Soil	MRALLVGGVVVVASITPAFAAGLAPKDIQSTFFNGQPFTSSTMS
Ga0134123_113271011	3300010403	Terrestrial Soil	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQPFTS
Ga0137392_106173102	3300011269	Vadose Zone Soil	MRAFFVAGMAIVASIAPALAAVLTPSEIQSTFFTGQPFTSATPSN
Ga0137392_106855862	3300011269	Vadose Zone Soil	MRALLLAGVVAIASIAPASAAVLAPNEIQATFFTGQPFTSSTPSNVKFKMVFA
Ga0137388_104234711	3300012189	Vadose Zone Soil	MRALLLAGVVAIASIAPAFAAVLAPNEIQATFFTGQPFTSATPSNVKFKMV
Ga0137399_102221731	3300012203	Vadose Zone Soil	MRALFVAGVAVFATIAPALAAVLAPNEIQATFFTGQAFTAS
Ga0137384_106708362	3300012357	Vadose Zone Soil	MRASFVAAVAVLASIAPAFAAALTPNEIQATFFNG
Ga0157297_104542981	3300012914	Soil	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQPFTSSTPSNVKFKMVF
Ga0137413_100107926	3300012924	Vadose Zone Soil	MRTSLMAGAVVIVATATALAATLTPNEIQSTFFTGQPFTAATPTNT
Ga0137413_116462842	3300012924	Vadose Zone Soil	MRALFVAGVAVFATIAPALAAVLAPNEIQATFFTGQAFTASAT
Ga0126375_100581593	3300012948	Tropical Forest Soil	MAAAAIVAITPPAFAAALTPNEIQTTFFTGQPFTASAPNIKYKM
Ga0134087_102314022	3300012977	Grasslands Soil	MRASLVAVMAALAAITPVVAATLTPNEIQTTFFTGQPFTASATNVK
Ga0157375_128043952	3300013308	Miscanthus Rhizosphere	MRALLVGGVVVVASITPALAAGLAPKDIQSTFFNGQPFT
Ga0132255_1025229182	3300015374	Arabidopsis Rhizosphere	MRALLVGGVVVVASITPAFSAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMVFTPDGKM
Ga0132255_1039901022	3300015374	Arabidopsis Rhizosphere	MRALFVAGVAAVAATTAALAAVLAPNEIQATFFTGQPFTAATPSNTKF
Ga0182034_116268162	3300016371	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTASATNVKYRMTF
Ga0182034_116383501	3300016371	Soil	MRALLIAGVVVVAVSAPAFAAALAPNEIQAAFFTGQPFTASATNVKYKMT
Ga0182034_118716261	3300016371	Soil	MRALLLAGVAATVSIASAFAATLAPNDIQSTFFTGQPFTSATPSNIKFKMVFS
Ga0182037_111922331	3300016404	Soil	MRALLVAGVAVVAVTAPAFAAALAPNEIQATFFNGQP
Ga0184619_100082276	3300018061	Groundwater Sediment	MRALLVAGAVVVASITPALAAVLAPNEIQATFFTG
Ga0184639_106169481	3300018082	Groundwater Sediment	MRALLVAGAVVVASITPALAAVLAPNEIQSTFFTGQPFT
Ga0210407_113292001	3300020579	Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQ
Ga0210382_103307472	3300021080	Groundwater Sediment	MRSFLVAGVALVAAITSALAAALAPSDIQATFFTGQPFTASATNI
Ga0210408_101722921	3300021178	Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTG
Ga0193695_11087632	3300021418	Soil	MRALLVAGVVVVASITPALAAVLAPNEIQTTFFTGQPFTSSTPSNVKFKMV
Ga0247799_10290481	3300023072	Soil	MRALFAAGMVVVASITPALAAALAPKDIQSTFFNGQPFTSSTMSNVKFKM
Ga0207647_105129332	3300025904	Corn Rhizosphere	MRALFAAGMVVVASITPALAAVLAPNEIQATFFNGQPFTSSTPSN
Ga0207685_100919552	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRALLVGGVVVVASITPAFAAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMVFTP
Ga0207664_115764802	3300025929	Agricultural Soil	MRALFLAAVAVIAMTAPALAAALAPNEIQSTFFTGQAFTSS
Ga0207690_110785241	3300025932	Corn Rhizosphere	MRALLVGGVVVIASITPALAAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMVFT
Ga0207665_100790704	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFTASA
Ga0207703_113378121	3300026035	Switchgrass Rhizosphere	MRAVCLAGLLVVVAAAPASAAVLAPNEIQATFFNGQPFTASTGSTKYKMVFS
Ga0209802_11139822	3300026328	Soil	MRAAFVAAVAIVAVTAPAFAAALTPNEIQATFFTGQPFTASAPNIKYKMI
Ga0257158_11255721	3300026515	Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFTAAA
Ga0209418_10168442	3300027371	Forest Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFTAAATNIWGS
Ga0209625_11133342	3300027635	Forest Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFT
Ga0307311_102490081	3300028716	Soil	MRALLVAGVVVVASITPALAAVLAPNEIQTTFFTG
Ga0307282_100329421	3300028784	Soil	MRALLVAGAVVVASITPALAAVLAPNEIQATFFTGQ
Ga0307323_101525101	3300028787	Soil	MRALFVAGVAVMALIAPALAAVLAPNEIQATFFTGQPFT
Ga0307289_100343823	3300028875	Soil	MRALLVAGVVVVASITPALAAVLAPNEIQTTFFTGQPFTSSTPSNVKFKMVFT
Ga0307286_101823512	3300028876	Soil	MRALLVGGVVVIASITPALAAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMVF
Ga0307495_100461442	3300031199	Soil	MRALLVAGAVVVASITPALAAVLAPNEIQSTFFTGQPFTSSTPSN
Ga0170819_116541121	3300031469	Forest Soil	MRALLVAGVVVVASITPALAAVLAPKDIQSTFFNGQPFTSSTMSNVKFK
Ga0318534_104261491	3300031544	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPF
Ga0318534_108113002	3300031544	Soil	MRALLVAGVAVVAVTAPAFAAALAPNEIQATFFNGQPFT
Ga0318528_104183941	3300031561	Soil	MRALLIAGVVVVAVSAPAFAAALAPNEIQAAFFTG
Ga0318573_104304532	3300031564	Soil	MRTWLLAGVVAISAVAPAAAAMLAPNEIQATFFNGQPFTASSG
Ga0310915_105369012	3300031573	Soil	MRTWLLAGVVAISAVAPAAAAMLAPNEIQATFFNGQPFTASSGSTK
Ga0318574_105324712	3300031680	Soil	MRALLVAGVAVVAVTASAFAAALAPNEIQATFFNGQPFTASATNVKYK
Ga0318560_101559021	3300031682	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQAAFFTGQPFTASA
Ga0306917_108882281	3300031719	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTAAA
Ga0318493_104093821	3300031723	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQAAFFTG
Ga0318535_104123721	3300031764	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPFTAS
Ga0318535_105378092	3300031764	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQAAFFTGQPFTA
Ga0318554_105428852	3300031765	Soil	MRTWLLAGVVAISAVAPAAAAMLAPNEIQATFFNGQP
Ga0318546_110661931	3300031771	Soil	MRALLLAGVIACAAIAPASAATLSPTEIQSTFFTGQPFTSATPSNVKFKMVFM
Ga0318543_100887691	3300031777	Soil	MRPSLVVAAAVVAVTAPAFAATLTPNEIQSTFFNGQP
Ga0318543_103144791	3300031777	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTAAATNVKY
Ga0318508_10051694	3300031780	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPFTA
Ga0318547_105085471	3300031781	Soil	MRALLLAGVIACAAIAPASAATLSPTEIQSTFFTGQPF
Ga0318550_104667072	3300031797	Soil	MRPSLVVAAAVVAVTAPAFAATLTPNEIQSTFFNGQPFTAAAT
Ga0318550_105138232	3300031797	Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPFTASATNVKYKMT
Ga0318511_100436353	3300031845	Soil	MRALLVAGVAVVAVTASAFAAALAPNEIQATFFNGQPFTASATN
Ga0318512_106196321	3300031846	Soil	MRALLVAGVAVVAVTASAFAAALAPNEIQATFFNGQPF
Ga0318527_100265464	3300031859	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPFTASTGNTKYKMT
Ga0318495_104126201	3300031860	Soil	MRTWLLAGVVAISAVAPAAAAMLAPNEIQATFFNGQPFT
Ga0318544_102080652	3300031880	Soil	MRALLVAGVAVVAVTAPAFAAALAPNEIQATFFNGQPFTASATNVKYKMT
Ga0318520_101253792	3300031897	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQ
Ga0318520_104739901	3300031897	Soil	MRALLLAGVAATVSIASAFAATLAPNDIQSTFFTGQPFT
Ga0318520_105289521	3300031897	Soil	MRALLIAGVAVVAVTAPAFAAALAPNEIQATFFTGQPF
Ga0310884_109414402	3300031944	Soil	MRALLVGGVVVIASITPALAAGLAPKDIQSTFFNGQPFTSSTMSNVKFKMV
Ga0310910_102637792	3300031946	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPFT
Ga0310910_108513341	3300031946	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTAAAT
Ga0318563_108117692	3300032009	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTAAATNVKYKMT
Ga0310906_108328282	3300032013	Soil	MRALFAAGMVVVAVITPALAAVLAPNEIQATFFNGQPFTSST
Ga0318506_101773831	3300032052	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTASATNVKYKMTF
Ga0318513_105892881	3300032065	Soil	MRALLVAGVAVVAVTASAFAAALAPNEIQATFFNGQPFTASATNVKY
Ga0306924_116466901	3300032076	Soil	MRAVLLTGVSLIASIAPAFAAVLAPADIQATFFNGQPF
Ga0306924_118176812	3300032076	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQPFTASTGNTKYK
Ga0318525_106806471	3300032089	Soil	MRALLIAGVAVVAVSAPAFAAALAPNEIQATFFTGQPFTASATN
Ga0318577_100155335	3300032091	Soil	MRTLLLAGAVAIVAVAPVFAATLAPSEIQATFFTGQP
Ga0306920_1023185131	3300032261	Soil	MRALIIAGAVVVAAVAPALAAVLAPAEIQSTFFNGQPFNSSA
Ga0247829_114187111	3300033550	Soil	MRTLLLAGPAVLASIALAVAAVLAPKDIQATFFTGQAFT
Ga0247830_114047252	3300033551	Soil	MRTLLLAGAAVLASIALAVAAVLAPKDIQATFFTGQAFTAATPSNVKFK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087790

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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