Metagenome / Metatranscriptome Family F087787

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087787
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	122 residues
Representative Sequence	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF
Number of Associated Samples	92
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.27 %
% of genes near scaffold ends (potentially truncated)	35.45 %
% of genes from short scaffolds (< 2000 bps)	77.27 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.091 % of family members)
Environment Ontology (ENVO)	Unclassified (24.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.97% β-sheet: 0.00% Coil/Unstructured: 32.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.24.3.0: automated matches	d6a3ka_	6a3k	0.78607
a.24.3.2: Cytochrome c'-like	d2ykza_	2ykz	0.78349
a.24.9.2: VBS domain	d2b0ha1	2b0h	0.75598
a.24.3.2: Cytochrome c'-like	d2ccya_	2ccy	0.75262
a.24.3.2: Cytochrome c'-like	d1cpqa_	1cpq	0.74631

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13460	NAD_binding_10	30.91
PF14552	Tautomerase_2	19.09
PF00583	Acetyltransf_1	8.18
PF04993	TfoX_N	7.27
PF07452	CHRD	5.45
PF10459	Peptidase_S46	3.64
PF08281	Sigma70_r4_2	1.82
PF08450	SGL	0.91
PF00266	Aminotran_5	0.91
PF01738	DLH	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	7.27
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.91
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.91

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.45 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	50.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	50.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	50.91 %
Phreatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	50.00 %
Phreatobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	48.18 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1.82 %
Phreatobacter stygius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter stygius	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.91 %
Saccharomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	48.18 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	1.82 %
Phreatobacter stygius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter stygius	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Saccharomonospora marina	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora marina	0.91 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	48.18 %
Archangium gephyra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	1.82 %
Phreatobacter stygius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter stygius	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.91 %
Saccharomonospora marina	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora marina	0.91 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_322030	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14116873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	803	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105392098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1096	Open in IMG/M
3300001990\|JGI24737J22298_10054471	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300002070\|JGI24750J21931_1008458	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300003659\|JGI25404J52841_10006432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2458	Open in IMG/M
3300003659\|JGI25404J52841_10070830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter stygius	728	Open in IMG/M
3300003659\|JGI25404J52841_10116174	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300004156\|Ga0062589_101366538	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300004157\|Ga0062590_100054853	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300004479\|Ga0062595_100247117	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300004633\|Ga0066395_10011003	All Organisms → cellular organisms → Bacteria	3349	Open in IMG/M
3300004643\|Ga0062591_100060585	All Organisms → cellular organisms → Bacteria	2225	Open in IMG/M
3300005289\|Ga0065704_10608350	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	603	Open in IMG/M
3300005290\|Ga0065712_10101749	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300005332\|Ga0066388_100088770	All Organisms → cellular organisms → Bacteria	3504	Open in IMG/M
3300005332\|Ga0066388_100383972	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	2051	Open in IMG/M
3300005332\|Ga0066388_102401428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	956	Open in IMG/M
3300005332\|Ga0066388_102527409	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005332\|Ga0066388_102904852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	876	Open in IMG/M
3300005332\|Ga0066388_103901765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	761	Open in IMG/M
3300005333\|Ga0070677_10000672	All Organisms → cellular organisms → Bacteria	11449	Open in IMG/M
3300005341\|Ga0070691_10055103	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300005440\|Ga0070705_100009100	All Organisms → cellular organisms → Bacteria	4929	Open in IMG/M
3300005456\|Ga0070678_100289632	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300005459\|Ga0068867_101839252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	570	Open in IMG/M
3300005547\|Ga0070693_100460345	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005564\|Ga0070664_100770375	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	899	Open in IMG/M
3300005614\|Ga0068856_100656813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1069	Open in IMG/M
3300005764\|Ga0066903_100003833	All Organisms → cellular organisms → Bacteria	12464	Open in IMG/M
3300005764\|Ga0066903_104062693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300005841\|Ga0068863_100672233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1028	Open in IMG/M
3300005983\|Ga0081540_1000944	All Organisms → cellular organisms → Bacteria	26173	Open in IMG/M
3300006163\|Ga0070715_10925289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora marina	538	Open in IMG/M
3300006358\|Ga0068871_102338588	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300006575\|Ga0074053_10460887	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300006804\|Ga0079221_10496205	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006854\|Ga0075425_100171587	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300006854\|Ga0075425_100382503	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300006854\|Ga0075425_100783595	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300006871\|Ga0075434_102059788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300006904\|Ga0075424_101068931	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300006954\|Ga0079219_10047807	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1823	Open in IMG/M
3300009553\|Ga0105249_10003664	All Organisms → cellular organisms → Bacteria	13253	Open in IMG/M
3300010046\|Ga0126384_10302611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1315	Open in IMG/M
3300010046\|Ga0126384_11392799	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	653	Open in IMG/M
3300010048\|Ga0126373_10252493	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	1736	Open in IMG/M
3300010359\|Ga0126376_11788278	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	652	Open in IMG/M
3300010361\|Ga0126378_10087161	All Organisms → cellular organisms → Bacteria	3043	Open in IMG/M
3300010366\|Ga0126379_10196618	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1935	Open in IMG/M
3300010366\|Ga0126379_10528310	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300010376\|Ga0126381_102880952	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	685	Open in IMG/M
3300011107\|Ga0151490_1367608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1429	Open in IMG/M
3300012511\|Ga0157332_1063921	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	559	Open in IMG/M
3300012986\|Ga0164304_10337790	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1047	Open in IMG/M
3300013100\|Ga0157373_10311280	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1119	Open in IMG/M
3300014326\|Ga0157380_10356300	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300014745\|Ga0157377_10001021	All Organisms → cellular organisms → Bacteria	11814	Open in IMG/M
3300014969\|Ga0157376_12019414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	614	Open in IMG/M
3300015373\|Ga0132257_100056831	All Organisms → cellular organisms → Bacteria	4379	Open in IMG/M
3300015374\|Ga0132255_100083339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4291	Open in IMG/M
3300016371\|Ga0182034_10592937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	934	Open in IMG/M
3300021445\|Ga0182009_10733957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	537	Open in IMG/M
3300021560\|Ga0126371_10670126	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1186	Open in IMG/M
3300021560\|Ga0126371_10703355	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1159	Open in IMG/M
3300021560\|Ga0126371_11466828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	811	Open in IMG/M
3300021560\|Ga0126371_12367100	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	642	Open in IMG/M
3300025315\|Ga0207697_10001796	All Organisms → cellular organisms → Bacteria	11485	Open in IMG/M
3300025917\|Ga0207660_10150703	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300025924\|Ga0207694_10031476	All Organisms → cellular organisms → Bacteria	4053	Open in IMG/M
3300026089\|Ga0207648_10514099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1097	Open in IMG/M
3300026121\|Ga0207683_10278471	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300027743\|Ga0209593_10021802	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300027874\|Ga0209465_10012252	All Organisms → cellular organisms → Bacteria	3831	Open in IMG/M
3300031538\|Ga0310888_10249594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	996	Open in IMG/M
3300031543\|Ga0318516_10137948	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300031544\|Ga0318534_10162134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1292	Open in IMG/M
3300031547\|Ga0310887_10964017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	543	Open in IMG/M
3300031564\|Ga0318573_10300580	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	859	Open in IMG/M
3300031640\|Ga0318555_10372809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	773	Open in IMG/M
3300031680\|Ga0318574_10759847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	568	Open in IMG/M
3300031716\|Ga0310813_10574731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter stygius	994	Open in IMG/M
3300031720\|Ga0307469_10009555	All Organisms → cellular organisms → Bacteria	4655	Open in IMG/M
3300031724\|Ga0318500_10185081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	993	Open in IMG/M
3300031740\|Ga0307468_100034914	All Organisms → cellular organisms → Bacteria	2450	Open in IMG/M
3300031770\|Ga0318521_10561626	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	689	Open in IMG/M
3300031779\|Ga0318566_10670118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	503	Open in IMG/M
3300031781\|Ga0318547_10056646	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300031795\|Ga0318557_10441847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	598	Open in IMG/M
3300031821\|Ga0318567_10117026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1454	Open in IMG/M
3300031821\|Ga0318567_10191685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1140	Open in IMG/M
3300031833\|Ga0310917_10471694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	854	Open in IMG/M
3300031893\|Ga0318536_10707336	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	502	Open in IMG/M
3300031912\|Ga0306921_12036356	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	610	Open in IMG/M
3300031947\|Ga0310909_10603277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	917	Open in IMG/M
3300032001\|Ga0306922_11049367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	838	Open in IMG/M
3300032001\|Ga0306922_11424852	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	696	Open in IMG/M
3300032008\|Ga0318562_10790059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	544	Open in IMG/M
3300032041\|Ga0318549_10485998	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	555	Open in IMG/M
3300032065\|Ga0318513_10274951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	817	Open in IMG/M
3300032068\|Ga0318553_10566522	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	595	Open in IMG/M
3300032076\|Ga0306924_10721208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1118	Open in IMG/M
3300032180\|Ga0307471_100529529	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1330	Open in IMG/M
3300032261\|Ga0306920_101892648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	839	Open in IMG/M
3300032421\|Ga0310812_10150570	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300032770\|Ga0335085_10015476	All Organisms → cellular organisms → Bacteria	11066	Open in IMG/M
3300032782\|Ga0335082_11081061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	668	Open in IMG/M
3300033004\|Ga0335084_11683499	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	624	Open in IMG/M
3300033290\|Ga0318519_10429285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	790	Open in IMG/M
3300033290\|Ga0318519_11079065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.91%
Host-Associated	Host-Associated	29.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.00%
Plants	Host-Associated → Plants	29.09%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.64%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0968.00007370	2162886012	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF
ICChiseqgaiiFebDRAFT_141168733	3300000363	Soil	VTALYSLLVALHVVSLVFCAGPVLALALVPGGLSPPAAQRLSRVANFGLLGILLTGGAALAMTGPAFIHTWWLRLSVLLFLVIGALTGRLRKLTRDPASASKLRPLAWAITIALALVVYLMEGKPF*
INPhiseqgaiiFebDRAFT_1053920981	3300000364	Soil	MDLYSLIVALHVVSFAFCAGPALALALVPGGLSPPAVQRLSRVASFGLLALLLTGIAAVAMTGPAFIHTWWLRLSGILFLVIGGLLGWLRRSTRTPGSGNRVRTLA
JGI24737J22298_100544712	3300001990	Corn Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRXASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
JGI24750J21931_10084581	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	LALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
JGI25404J52841_100064324	3300003659	Tabebuia Heterophylla Rhizosphere	VVTVYSLLLTLHVVSLVFCAGPVLALALVPTGFTPSAAHRLSRVASFALLALLVTGGTAVAMTGQAFVHTWWLRLSLLLFLVIGALTGRLRRLTRDAGSASGVRPLAWTITVALGLVVYLMEGKPF*
JGI25404J52841_100708302	3300003659	Tabebuia Heterophylla Rhizosphere	VYSLVVALHVVSLSFCAGPVLALALVSGDLSPSVQQRLSRVASFGLLGLLLTGLAAVGMTGAAFVHTGWFRVSMVLFLIIGGLTGWLRKLTKTPGSGNRLRTLAWSITVGLALVVYLM
JGI25404J52841_101161742	3300003659	Tabebuia Heterophylla Rhizosphere	VTIVYSVVIALHVVSFAFCAGPVLAITLAGGGISPPAAQRLVRVAGFALLALLITGGYAAAVTGGAFFHTWWLRLSILLFLVIGALLGRLRRLSRQPDSGSAMRTLGWVITAALALVVYLMEGKPF*
Ga0062589_1013665382	3300004156	Soil	YSLVVALHVVSLSFCAGPILALAFVPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGALRRSIRTPGSGHRVRTLAWVITVALALVVYLMEAKPF*
Ga0062590_1000548533	3300004157	Soil	MDVYSLVVALHVVSLSFCAGPILALAFVPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGALRRSIRTPGSGHRVRTLAWVITVALALVVYLMEAKPF*
Ga0062595_1002471172	3300004479	Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSGAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRAPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0066395_100110032	3300004633	Tropical Forest Soil	MTGHRSQVAGGCLVIFAYSLLVAVHVVSFLFCAGPLLALALAPEIGPVATQRLTRVAGFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLILFLVIGALIGRSRRLSREPGSASAVRRLAWVTTLALVLVVYLMEAKPF*
Ga0062591_1000605853	3300004643	Soil	MDVYSLVVALHVVSLSFCAGPILALAFVPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGALRRSIRTPGSGHRVRTLAWVITVALGLVVYLMEAKPF*
Ga0065704_106083501	3300005289	Switchgrass Rhizosphere	VTVAYSLLVALHVVSLVFCAGPVLTLALVPGGLAPSAAQRLTRVASFGLLGLLLTGGAAVAMTGPAFIHTWWLRLSVLLFLVIGALTGRLRRLTRGPGSASGVRPLAWAITFALALVVYLMEGKPF*
Ga0065712_101017492	3300005290	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0066388_1000887704	3300005332	Tropical Forest Soil	VYSLVVALHVVSLSFCAGPVIALALGSRELSPSVQLRLARVANFGLLGLLLTGIAAVAMTGPAFVHAWWFRVAMVLFLVIGGLTGWLRRLTRAPGSGDRVRTVAWTITVALALAVYLMEGKPF*
Ga0066388_1003839722	3300005332	Tropical Forest Soil	MTSYTLVVWLHVVSLMVCAGPVLVLALASEGISPPLAQRLAMVSGLGLLGLLLTGATAVAMTGPAFVQTWWLRLSGILFLVIGALTGRLRSATRKPGSARVIRSLGWTITAALVLVVYLMEAKPF*
Ga0066388_1024014282	3300005332	Tropical Forest Soil	VIALYSLLISVHVVSLLFCAGPLLVLALGAAELPVSMSQRLTRVSSLGLVGLLVTGGTAVAMTGPAFIHTWWLRLSLLLFLVIGALTGRLRRLTRDPGSARRVRTLAWVT
Ga0066388_1025274092	3300005332	Tropical Forest Soil	VTALYSLLIAVHVLSLVFCAGPVLALALVPGGISPPAAQRLAWVANFGLLGILLTGAAALAMTGPAFVHTWWLRISVLLFLLIGALTGRLRKLTRNADSASRVRPLAWGITIALALAVYLMEGKPF*
Ga0066388_1029048522	3300005332	Tropical Forest Soil	VYSLVVALHVVSLLFCAGPLLALALVPGELPPLAVQRLSRVASFGLLGILLTGIAAVAMTGPAFVHTGWFRVSVVLFVIIGGLTGWLRRLTRKPGSGNTVRTLAWTITIALAVVVYLMEGKPF*
Ga0066388_1039017651	3300005332	Tropical Forest Soil	VTIVYSVVVALHVVSFAFCAGPVLAITLAGGGSSPPAAQRLIRVASFALLALLITGGYAAAVTGGAFFHTWWLRLSLLLFLVIGALLGRLRRLSRQPDSGSAMRTLGWVITVALALVVYLMEGKPF*
Ga0070677_100006723	3300005333	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSGAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0070691_100551034	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0070705_1000091006	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0070678_1002896321	3300005456	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGTASRVRTLAWIITVLLAVVVYLMEAKPF*
Ga0068867_1018392521	3300005459	Miscanthus Rhizosphere	LHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVAGFGLLGLLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLIGWLRRSTRAPGSGSRVRTLAWAITVALALVVYLMEAKPF*
Ga0070693_1004603451	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RMNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0070664_1007703753	3300005564	Corn Rhizosphere	GPVLALAFVPGELSPPAARRLSRVASIGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGSASKVRTLAWIVTVLLAVVVYLMEAKPF*
Ga0068856_1006568132	3300005614	Corn Rhizosphere	MNVYSLLVALHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVASFGLVGLLLTGGAAVAMTGPAFVHTWWLRLSGLLFLVIGGLFGWLRRSTRAPGSASRVRTLAWAITVGLALVVYLMEAKPF*
Ga0066903_1000038337	3300005764	Tropical Forest Soil	VIFAYSLLVAVHVVSFLFCAGPLLALALAPEIGPVATQRLTRVAGFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLILFLVIGALIGRSRRLSREPGSASAVRRLAWVTTLALVLVVYLMEAKPF*
Ga0066903_1040626931	3300005764	Tropical Forest Soil	VIALYSLLISVHVVSLLFCAGPLLVLALGATELPVPMAQRLTRVASLGLVGLLVTGAAALAMTGPAFIHTWWLRLSVLLFLLIGALTGRLRRLTRDPGSARRVRT
Ga0068863_1006722332	3300005841	Switchgrass Rhizosphere	MNVYSLLVALHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVASFGLLGLLLTGGAAVAMTGPAFVHTWWLRLSGLLFLVIGGLFGWLRRSTRAPGSASRVRTLAWAITVGLALVVYLMEAKPF*
Ga0081540_10009446	3300005983	Tabebuia Heterophylla Rhizosphere	VYSLVVALHVVSLSFCAGPVLALALVSGDLSPSVQQRLSRVASFGLLGLLLTGLAAVGMTGAAFVHTGWFRVSMVLFLIIGGLTGWLRKLTKTPGSGNRLRTLAWSITVGLALVVYLMEAKPF*
Ga0070715_109252891	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEA
Ga0068871_1023385882	3300006358	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPPAARRLSRVASIGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGSASKVRTLAWIVTVLLAVVVYLMEAKPF*
Ga0074053_104608872	3300006575	Soil	MNVYYLVVALHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVASFGLLGLLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLIGWLRRPTRAPGSGSRVRTLAWAITVALALVVYLMEAKPF*
Ga0079221_104962051	3300006804	Agricultural Soil	VLAIALAAGGISSPAVQRLVRVASFALLALLITGGFAAAVTGGAFFQTWWLRLSILLFLVIGALTGRLRRLSRQPGSEGAMRRVGWAITVALALVVYLMEGKPF*
Ga0075425_1001715875	3300006854	Populus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0075425_1003825032	3300006854	Populus Rhizosphere	MTIVYSVVVALHVVSFAFCAGPVLAIALAAGGISSPAVQRLVRVASFALLALLITGGFAAAVTGGAFFQTWWLRLSILLFLVIGALTGRLRRLSRQPGSEGAMRRVGWTITVALALVVYLMEGKPF*
Ga0075425_1007835952	3300006854	Populus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLSGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRAPGTASRVRTLAWIITVLLAVVVYLMEAKPF*
Ga0075434_1020597881	3300006871	Populus Rhizosphere	VYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0075424_1010689312	3300006904	Populus Rhizosphere	MTIVYSVVVALHVVSFAFCAGPVLAIALAAGGISSPAVQRLVRVASFALLALLITGGFAAAVTGGAFFQTWWLRLSILLFLVIGALTGRLRRLSRQPGSEGAMRRVGWAITVALALVVYLMEGKPF*
Ga0079219_100478074	3300006954	Agricultural Soil	VVSLSFCAGPVLALAFVPGELSPPAARRLSRVASIGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGSASKVRTLAWIVTVLLAVVVYLMEAKPF*
Ga0105249_100036647	3300009553	Switchgrass Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0126384_103026111	3300010046	Tropical Forest Soil	VYSLVVALHVVSLLFCEGPLLALALVPGELSPLAVQRLSRVASFGLLGILLTGIAAVAMTGPAFVHTGWFRVSVVLFVIIGGLTGWLRRLTRKPGSGNTVRTLAWTITIALAVVVYLMEGKPF*
Ga0126384_113927991	3300010046	Tropical Forest Soil	VNVYSLVVALHVVSLSFCAGPVIALALGSRELSPSVQLRLARVANFGLLGLLLTGIAAVAMTGPAFVHAWWFRVAMVLFLVIGGLTGWLRRLTRAPGSGDRVRTVAWTITVALALAVYLMEGKPF*
Ga0126373_102524932	3300010048	Tropical Forest Soil	VYSLVVALHVVSLLFCAGPLLALALVPGELSPLAVQRLSRVASFGLLGILITGVAAIVMTGQAFVHTGWFRVSGVLFLVIGGLIGWLRRLTRKPGSADRVRTLAWAITAALALVVYLME
Ga0126376_117882782	3300010359	Tropical Forest Soil	VYSLVVALHVVSLLFSAGPLLALALVPGELSPLAVQRLSRVASFGLLGILLTGIAAVAMTGPAFVHTGWFRVSVVLFVIIGGLTGWLRRLTRKPGSGNTVRTLAWTITLALAVVVYLMEGKPF*
Ga0126378_100871615	3300010361	Tropical Forest Soil	VIALYSLLISVHVVSLLFCAGPLLVLALGATELPVPMAQRLTRVASLGLVGLLVTGAAALAMTGPAFIHTWWLRLSVLLFLLIGALTGRLRRLTRDPGSARRVRTLAWVTTAVLVIVVYLMEAKPF*
Ga0126379_101966182	3300010366	Tropical Forest Soil	MTGHRSQVAGGCLVIFAYSLLVAVHVVSFLFCAGPLLALALAPEIGPVATQRLTRVAGFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLILFLVIGALTGRLRRLTREPGSAGAVGRLAWVTTLVLVLVVYLMEAKPF*
Ga0126379_105283101	3300010366	Tropical Forest Soil	VYSLVVALHVVSLLFCAGPLLALALVPGELPPLAVQRLSRVASFGLLGILLTGIAAVAMTGPAFVHTGWFRVSVVLFVLIGGLTGWLRRLTRKPGSGNTVRTLAWTITIALAVVVYLMEGKP
Ga0126381_1028809522	3300010376	Tropical Forest Soil	MNVYSLVVALHVVSLLFCAGPVVALAVVPGELTSPVEQRLSRVASFGLLALLLTGIGALAMTGQAFVHTGWFRVSGVLFLVIGGLTGWLRRLTRTPGSGDRVRTVAWVITACLVLAVYLMEGKPF*
Ga0151490_13676081	3300011107	Soil	MNVYYLVVALHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVASFGLLGLLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLIGWLRRSTRAPGSASRVRTLAWAITVALALVVYLMEAKPF*
Ga0157332_10639211	3300012511	Soil	ERMNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLSGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRAPGTASRVRTLAWIITVLLAVVVYLMEAKPF*
Ga0164304_103377901	3300012986	Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0157373_103112803	3300013100	Corn Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGSASKVRTLAWIVTVLLAVVVYLMEAKPF*
Ga0157380_103563001	3300014326	Switchgrass Rhizosphere	MMNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0157377_100010215	3300014745	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCSGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF*
Ga0157376_120194141	3300014969	Miscanthus Rhizosphere	VVSLSFCAGPVLALAVVPGELSPSAAQRLSRVASFGLVGLLLTGGAAVAMTGPAFVHTWWLRLSGLLFLVIGGLFGWLRRSTRAPGSASRVRTLAWAITVGLALVVYLMEAKPF*
Ga0132257_1000568315	3300015373	Arabidopsis Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLSGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRAPGTASRVRTLAWIITVLLAVVVYLMEAKSF*
Ga0132255_1000833393	3300015374	Arabidopsis Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLSGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGTASRVRTLAWIITVLLAVVVYLMEAKPF*
Ga0182034_105929372	3300016371	Soil	MNLSLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0182009_107339572	3300021445	Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSGAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGALRRSIRTPGSGHRVRTLAWVITVALALVVYLMEAKPF
Ga0126371_106701262	3300021560	Tropical Forest Soil	VIALYSLLISVHVVSLLFCAGPLLVLALGATELPVPMAQRLTRVASLGLVGLLVTGAAALAMTGPAFIHTWWLRLSVLLFLLIGALTGRLRRLTRDPGSARRVRTLAWVTTAVLVIVVYLMEAKPF
Ga0126371_107033551	3300021560	Tropical Forest Soil	VYSLVVALHVVSLLFCAGPLLALALVPGELPPLAVQRLSRVASFGLLGILLTGVAAIAMTGPAFVHTGWFRVSVVLFVIIGGLTGWLRRLTRKPGSGNRVRTLAWTITAALALVVYLMEGKPF
Ga0126371_114668282	3300021560	Tropical Forest Soil	MTGHRSQVAGGCLVIFAYSLLVAVHVVSFLFCAGPLLALALAPEIGPVATQRLTRVAGFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLILFLVIGALIGRSRRLSREPGSASAVRRLAWVTTLALVLVVYLMEAKPF
Ga0126371_123671001	3300021560	Tropical Forest Soil	VTIVYSVVVALHVVSFAFCAGPVLAITVAGGGISPPAAQRLVRVASFALLALLLTGGYAAAVTGGAFFHTWWLRLSILLFLVIGAFLGRLRKLSRQLPGSGNAMRTLGWVITVALALVVYLMEGKPF
Ga0207697_100017961	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0207660_101507031	3300025917	Corn Rhizosphere	CAGPVLALAFLPGELSPSAAGRLSRLASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0207694_100314763	3300025924	Corn Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0207648_105140993	3300026089	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAVVPGELSPSAAQRLSRVAGFGLLGLLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLIGWLRRSTRAPGSGSRVRTLAWAITVALALVVYLMEAKPF
Ga0207683_102784712	3300026121	Miscanthus Rhizosphere	MNVYSLVVALHVVSLSFCAGPVLALAFVPGELSPSAARRLSRVASVGLVFLLLTGAAALAMTGPAFVHTGWFRVSGVLFLVIGGLLGALGKSTRTPGTASRVRTLAWIITVLLAVVVYLMEAKPF
Ga0209593_100218024	3300027743	Freshwater Sediment	VTVVYSLLVALHVVSLVFCAGPILALALVPGGLTPSAAQRLTRVAGFGLLGILLTGGAAVAMTGPAFIHTWWLRLSVLLFLVIGALTGRLRRLTRDPGSASGVRPLAWAITFALALVVYLMEGKPF
Ga0209465_100122522	3300027874	Tropical Forest Soil	VIFAYSLLVAVHVVSFLFCAGPLLALALAPEIGPVATQRLTRVAGFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLILFLVIGALIGRSRRLSREPGSASAVRRLAWVTTLALVLVVYLMEAKPF
Ga0310888_102495942	3300031538	Soil	MDLYSLIVALHVVSFAFCAGPALALALVPGGLSPPAVQRLSRVASFGLLALLLTGIAAVAMTGPAFIHTWWLRLSGVLFLVIGGLLGWLRRSTRAPGSGDRVRTLAWVVVLALAVVVYLMEAKPF
Ga0318516_101379482	3300031543	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0318534_101621342	3300031544	Soil	VYSLVVALHVVSLLFCAGPLLALGLVPGELSPLAVQRLSRVASFGLLGILLTGVAAVAMTGPAFVHTGWFRVSIVLFLIIGGLTGWLRRLTRKPGSGDRVRRLAWTITVGLALVVYLMEAKPF
Ga0310887_109640171	3300031547	Soil	CAGPALALALVPGGLSPPAVQRLSRVGSFGLLALLLTGIAAVAMTGPAFIHTWWLRLSGILFLVIGGLLGWLRRSTRTPGSGNRVRTLAWVVVLALALVVYLMEAKPF
Ga0318573_103005802	3300031564	Soil	MIFAYSLLVAVHVVSFLFCAGPLLALALAPDMGPSAAQRLTRVASFGLLALLVTGVGAIAMTGPAFIHTWWLRLSLILFLVIGALTGRLRRLTREPGSAGAVGRLARVTTLALVLVVYLMEAKPF
Ga0318555_103728091	3300031640	Soil	LMIFAYSLLVAVHVVSFLFCAGPLLALALAPDMGPSAAQRLTRVASFGLLALLVTGVGAIAMTGPAFIHTWWLRLSLILFLVIGALTGRLRRLTREPGSAGAVGRLARVTTLALVLVVYLMEAKPF
Ga0318574_107598471	3300031680	Soil	VYSLVVALHVVSLLFCAGPLLALGLVPGELSPLAVQRLSRVASFGLLGILLTGVAAVAMTGPAFVHTGWFRVSIVLFLIIGGLTGWLRRLTRKPGSGDRVRRLAWTITVG
Ga0310813_105747312	3300031716	Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGEVSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRAPGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0307469_100095554	3300031720	Hardwood Forest Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTVGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0318500_101850811	3300031724	Soil	FCAGPLLALALAPDMGPSAAQRLTRVASFGLLALLVTGVGAIAMTGPAFIHTWWLRLSLILFLVIGALTGRLRRLTREPGSAGAVGRLARVTTLALVLVVYLMEAKPF
Ga0307468_1000349143	3300031740	Hardwood Forest Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTAGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0318521_105616262	3300031770	Soil	VVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0318566_106701181	3300031779	Soil	VTIVYSVVVALHVVSFAFCAGPVLAITLVGGGISPPATGRLVRVASFALLALLITGGYAAAVTGGAFFHTWWLRLSILLFVVIGALLGRLRKLSRQLPGSGNAMRTLGWVITVALAGVVYLMEGKPF
Ga0318547_100566463	3300031781	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGGLTGWLRRLTRTPGSGDRVRTVAWVITACLVLAVYLMEGKPF
Ga0318557_104418471	3300031795	Soil	LYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0318567_101170262	3300031821	Soil	LPGERTRMNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0318567_101916852	3300031821	Soil	VYSLVVALHVVSLLFCAGPVVALAVVPGELSSPVEQRLSRVASFGLLAMLLTGIGAIAMTGQAFVHTGWFRVSGVLFLVIGGLTGWLRRLTRTPGSGDRVRTVAWVITACLVLAVYLMEGKPF
Ga0310917_104716942	3300031833	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVA
Ga0318536_107073361	3300031893	Soil	VYSLVVALHVVSLLFCAGPVVALAVVPGELSSPVEQRLSRVASFGLLAMLLTGIGAIAMTGQAFVHTGWFRVSGVLFLVIGGLTGWLRRLTRTPGSGDRVRTVAWVITACLVLAVYLMEAKPF
Ga0306921_120363562	3300031912	Soil	VYSLVVALHVVSLLFCAGPLLALGLVPGELSPLAVQRLSRVASFGLLGILLTGVAAVAMTGPAFVHTGWFRVSIVLFLIIGGLTGWLRRLTRKPGSGDRVRRLAWTITVGLALV
Ga0310909_106032772	3300031947	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLM
Ga0306922_110493671	3300032001	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLA
Ga0306922_114248522	3300032001	Soil	VYSLVVALHVVSLLFCAGPVVALAVVPGELSPSVGQRLSRVASFGLLALLLTGIGAIAMTGQAFIHTGWFRVSGVLFLIIGGLTGWLRRLTRTPGSGNRVRTVAWVITAGLVLAVYLMEGKPF
Ga0318562_107900591	3300032008	Soil	AGPVLAITLVGGGISPPATGRLVRVASFALLALLITGGYAAAVTGGAFFHTWWLRLSILLFVVIGALLGRLRKLSRQLPGSGNAMRTLGWVITVALAGVVYLMEGKPF
Ga0318549_104859982	3300032041	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAW
Ga0318513_102749511	3300032065	Soil	FAYSLLVAVHVVSFLFCAGPLLALALAPDMGPSAAQRLTRVASFGLLALLVTGVGAIAMTGPAFIHTWWLRLSLILFLVIGALTGRLRRLTREPGSAGAVGRLARVTTLALVLVVYLMEAKPF
Ga0318553_105665221	3300032068	Soil	VYSLVVALHVVSLLFCAGPLLALGLVPGELSPLAVQRLSRVASFGLLGILLTGVAAVAMTGPAFVHTGWFRVSIVLFLIIGGLTGWLRRLTRKPGSGDRVR
Ga0306924_107212082	3300032076	Soil	TFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVRAVAWTITLALVLVVYLMEGKPF
Ga0307471_1005295293	3300032180	Hardwood Forest Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSASAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLLGWLRKSTRTPASGPRVRTLAWVITVALALVVYLMEAKPF
Ga0306920_1018926482	3300032261	Soil	VYSLVVALHVVSLLFCAGPVVALAVVPGGLSSPVEQRLSRVASFGLLALLLTGIGAIAMTGQAFVHTGWFRVSGVLFLVIGGLTGWLRRLTRTPGSGDRVRTVAWVITACLVLAVYLMEGKPF
Ga0310812_101505702	3300032421	Soil	MNVYSLVVALHVVSLSFCAGPVLALAFLPGELSPSAAGRLSRVASIGLLALLLTGGAAVAMTGPAFVHTWWLRLSGVLFLVIGGLMGWLRKSTRAPGSGPRVRTLAWVITVALALVVYLMEAKPF
Ga0335085_1001547612	3300032770	Soil	VYSLVVALHVVSLSFCAGPVLALAFVPGELSPPAARRLSRVASIGLLFLLLTGVAALAMTGPAFVHTGWFRLSGVLFLAIGGLLGALGKTTRTAGPASKVRTLAWVITVLLAVVVYLMEAKPF
Ga0335082_110810611	3300032782	Soil	SLLVALHVVSFLFCAGPLLALALAPEIAPSAAQRLSRVASFGLLALLLTGGGAVAMTGPAFIHTWWLRLSLLLFLVIGALTGRLRRLTRETGSAQAVRTLAWVTTGVLVLVVYLMEAKPF
Ga0335084_116834992	3300033004	Soil	VLDDSTMYSLVVALHVVSLAFCAGPVVALAVAPEGISAPAAQRLTRVANFGLLALLVTGGTAIAMTGPAFIHTWWLRLSVLLFLVLGGLFGRLRGLTRKGGSAGSIRSLAWIIV
Ga0318519_104292851	3300033290	Soil	GERRRTNVYSLVVALHVVSLLFCAGPLLALGLVPGELSPLAVQRLSRVASFGLLGILLTGVAAVAMTGPAFVHTGWFRVSIVLFLIIGGLTGWLRRLTRKPGSGDRVRRLAWTITVGLALVVYLMEAKPF
Ga0318519_110790652	3300033290	Soil	MNLYLYSLIVALHVVSLTFCAGPVLALALVPGELSPLAAQRLSRVAGFGLLGVLLTGVAAVAMSGPAFIHTWWLRLSGVLFLVIGALLGRLRKLTREAGSASGVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087787

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences