Metagenome Family F087765

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087765
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	37 residues
Representative Sequence	MIQRGRKYVVYDKHEKVVIITVDRNIAVQYARRQK
Number of Associated Samples	50
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.91 %
% of genes near scaffold ends (potentially truncated)	14.55 %
% of genes from short scaffolds (< 2000 bps)	76.36 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (92.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (93.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.46% β-sheet: 20.63% Coil/Unstructured: 61.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF11351	GTA_holin_3TM	34.55
PF00565	SNase	2.73
PF13539	Peptidase_M15_4	1.82
PF13759	2OG-FeII_Oxy_5	1.82
PF01521	Fe-S_biosyn	0.91
PF13884	Peptidase_S74	0.91
PF03237	Terminase_6N	0.91
PF04404	ERF	0.91
PF04218	CENP-B_N	0.91
PF00166	Cpn10	0.91
PF13661	2OG-FeII_Oxy_4	0.91
PF00036	EF-hand_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
All Organisms	root	All Organisms	26.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
cellular organisms	root	All Organisms → cellular organisms	15.45 %
Viruses	superkingdom	All Organisms → Viruses	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.64 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.64 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	2.73 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3.64 %
unclassified Legionellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales	2.73 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	0.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	2.73 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	0.91 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	0.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.18 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	2.73 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.91 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10005495	Not Available	8908	Open in IMG/M
3300000101\|DelMOSum2010_c10017896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4234	Open in IMG/M
3300000101\|DelMOSum2010_c10019218	All Organisms → Viruses → Predicted Viral	4036	Open in IMG/M
3300000101\|DelMOSum2010_c10147694	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300000116\|DelMOSpr2010_c10108435	Not Available	1029	Open in IMG/M
3300001347\|JGI20156J14371_10141059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	688	Open in IMG/M
3300001450\|JGI24006J15134_10000772	All Organisms → cellular organisms → Bacteria	19093	Open in IMG/M
3300001450\|JGI24006J15134_10044606	Not Available	1855	Open in IMG/M
3300001450\|JGI24006J15134_10067311	Not Available	1388	Open in IMG/M
3300001450\|JGI24006J15134_10075203	Not Available	1282	Open in IMG/M
3300001450\|JGI24006J15134_10163202	Not Available	717	Open in IMG/M
3300001450\|JGI24006J15134_10207565	Not Available	592	Open in IMG/M
3300001460\|JGI24003J15210_10017604	Not Available	2766	Open in IMG/M
3300001460\|JGI24003J15210_10183672	Not Available	504	Open in IMG/M
3300001472\|JGI24004J15324_10070519	Not Available	974	Open in IMG/M
3300001472\|JGI24004J15324_10091655	Not Available	799	Open in IMG/M
3300006026\|Ga0075478_10064076	Not Available	1194	Open in IMG/M
3300006026\|Ga0075478_10174960	All Organisms → Viruses	662	Open in IMG/M
3300006164\|Ga0075441_10076442	All Organisms → Viruses → Predicted Viral	1299	Open in IMG/M
3300006164\|Ga0075441_10255195	Not Available	645	Open in IMG/M
3300006165\|Ga0075443_10076481	Not Available	1139	Open in IMG/M
3300006165\|Ga0075443_10207953	Not Available	702	Open in IMG/M
3300006190\|Ga0075446_10022906	Not Available	2078	Open in IMG/M
3300006190\|Ga0075446_10224950	Not Available	521	Open in IMG/M
3300006191\|Ga0075447_10073627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1216	Open in IMG/M
3300006191\|Ga0075447_10076369	Not Available	1188	Open in IMG/M
3300006191\|Ga0075447_10163090	Not Available	744	Open in IMG/M
3300006191\|Ga0075447_10210483	Not Available	637	Open in IMG/M
3300006193\|Ga0075445_10031718	All Organisms → cellular organisms → Archaea	2194	Open in IMG/M
3300006352\|Ga0075448_10051939	Not Available	1309	Open in IMG/M
3300006352\|Ga0075448_10063345	Not Available	1174	Open in IMG/M
3300006352\|Ga0075448_10109494	Not Available	863	Open in IMG/M
3300006802\|Ga0070749_10545283	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300006810\|Ga0070754_10145650	Not Available	1136	Open in IMG/M
3300006947\|Ga0075444_10007689	Not Available	6099	Open in IMG/M
3300006947\|Ga0075444_10250546	Not Available	697	Open in IMG/M
3300006947\|Ga0075444_10251258	Not Available	695	Open in IMG/M
3300006947\|Ga0075444_10306989	Not Available	611	Open in IMG/M
3300007344\|Ga0070745_1025443	Not Available	2581	Open in IMG/M
3300008221\|Ga0114916_1082353	Not Available	812	Open in IMG/M
3300009172\|Ga0114995_10261349	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300009409\|Ga0114993_10217620	Not Available	1472	Open in IMG/M
3300009428\|Ga0114915_1063702	Not Available	1156	Open in IMG/M
3300009428\|Ga0114915_1073881	Not Available	1053	Open in IMG/M
3300009428\|Ga0114915_1074115	Not Available	1051	Open in IMG/M
3300009428\|Ga0114915_1089548	Not Available	928	Open in IMG/M
3300009428\|Ga0114915_1152055	Not Available	656	Open in IMG/M
3300009601\|Ga0114914_1002156	Not Available	3589	Open in IMG/M
3300009785\|Ga0115001_10013390	Not Available	5573	Open in IMG/M
3300010392\|Ga0118731_112939286	All Organisms → Viruses	587	Open in IMG/M
3300010883\|Ga0133547_11167214	Not Available	1474	Open in IMG/M
3300010883\|Ga0133547_11427470	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300010883\|Ga0133547_11457652	All Organisms → Viruses → Predicted Viral	1288	Open in IMG/M
3300010883\|Ga0133547_11925923	Not Available	1086	Open in IMG/M
3300017697\|Ga0180120_10180582	Not Available	882	Open in IMG/M
3300022053\|Ga0212030_1025360	Not Available	812	Open in IMG/M
3300022178\|Ga0196887_1008213	All Organisms → Viruses → Predicted Viral	3507	Open in IMG/M
3300025048\|Ga0207905_1065522	Not Available	538	Open in IMG/M
3300025071\|Ga0207896_1017626	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300025120\|Ga0209535_1018309	All Organisms → Viruses → Predicted Viral	3624	Open in IMG/M
3300025120\|Ga0209535_1076937	Not Available	1284	Open in IMG/M
3300025120\|Ga0209535_1095184	Not Available	1083	Open in IMG/M
3300025120\|Ga0209535_1095185	All Organisms → Viruses → Predicted Viral	1083	Open in IMG/M
3300025120\|Ga0209535_1116341	Not Available	920	Open in IMG/M
3300025120\|Ga0209535_1142830	Not Available	770	Open in IMG/M
3300025137\|Ga0209336_10147134	Not Available	625	Open in IMG/M
3300025138\|Ga0209634_1040722	Not Available	2369	Open in IMG/M
3300025138\|Ga0209634_1065698	Not Available	1727	Open in IMG/M
3300025138\|Ga0209634_1085156	Not Available	1440	Open in IMG/M
3300025138\|Ga0209634_1145415	Not Available	975	Open in IMG/M
3300025168\|Ga0209337_1023470	All Organisms → Viruses → Predicted Viral	3543	Open in IMG/M
3300025237\|Ga0208031_1013606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	1108	Open in IMG/M
3300025237\|Ga0208031_1019494	Not Available	914	Open in IMG/M
3300025237\|Ga0208031_1028733	Not Available	735	Open in IMG/M
3300025237\|Ga0208031_1033086	Not Available	677	Open in IMG/M
3300025237\|Ga0208031_1052787	Not Available	509	Open in IMG/M
3300025266\|Ga0208032_1005867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	4289	Open in IMG/M
3300025266\|Ga0208032_1028632	All Organisms → Viruses → Predicted Viral	1501	Open in IMG/M
3300025266\|Ga0208032_1029072	Not Available	1485	Open in IMG/M
3300025266\|Ga0208032_1031626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1395	Open in IMG/M
3300025266\|Ga0208032_1032675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	1363	Open in IMG/M
3300025266\|Ga0208032_1038749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	1202	Open in IMG/M
3300025266\|Ga0208032_1069018	Not Available	762	Open in IMG/M
3300025276\|Ga0208814_1000308	Not Available	32703	Open in IMG/M
3300025276\|Ga0208814_1003715	Not Available	6229	Open in IMG/M
3300025276\|Ga0208814_1010447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3335	Open in IMG/M
3300025276\|Ga0208814_1017138	Not Available	2469	Open in IMG/M
3300025276\|Ga0208814_1033887	Not Available	1597	Open in IMG/M
3300025276\|Ga0208814_1046280	Not Available	1292	Open in IMG/M
3300025276\|Ga0208814_1071657	Not Available	944	Open in IMG/M
3300025276\|Ga0208814_1079683	Not Available	872	Open in IMG/M
3300025276\|Ga0208814_1089193	Not Available	800	Open in IMG/M
3300025276\|Ga0208814_1098243	Not Available	742	Open in IMG/M
3300025276\|Ga0208814_1119905	Not Available	632	Open in IMG/M
3300025620\|Ga0209405_1024896	All Organisms → Viruses	2419	Open in IMG/M
3300025674\|Ga0208162_1059977	Not Available	1240	Open in IMG/M
3300025694\|Ga0209406_1066512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1298	Open in IMG/M
3300025806\|Ga0208545_1019338	Not Available	2334	Open in IMG/M
3300025889\|Ga0208644_1110393	Not Available	1333	Open in IMG/M
3300027522\|Ga0209384_1005595	Not Available	5029	Open in IMG/M
3300027522\|Ga0209384_1015653	All Organisms → Viruses → Predicted Viral	2529	Open in IMG/M
3300027522\|Ga0209384_1110922	Not Available	641	Open in IMG/M
3300027522\|Ga0209384_1148133	Not Available	516	Open in IMG/M
3300027672\|Ga0209383_1000622	Not Available	24387	Open in IMG/M
3300028125\|Ga0256368_1017880	Not Available	1239	Open in IMG/M
3300031519\|Ga0307488_10282778	Not Available	1077	Open in IMG/M
3300031598\|Ga0308019_10230230	Not Available	708	Open in IMG/M
3300031626\|Ga0302121_10022817	Not Available	2109	Open in IMG/M
3300033742\|Ga0314858_132381	Not Available	638	Open in IMG/M
3300034375\|Ga0348336_082003	Not Available	1162	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	56.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.82%
Coastal	Environmental → Aquatic → Marine → Coastal	14.55%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	5.45%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	56.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.64%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.82%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	29.09%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	27.27%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	20.91%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.00%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.55%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	1.82%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.82%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.91%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.91%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.91%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.91%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006191	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA	Environmental	Open in IMG/M
3300006193	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA	Environmental	Open in IMG/M
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300008221	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009601	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental	Open in IMG/M
3300025048	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)	Environmental	Open in IMG/M
3300025071	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025237	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)	Environmental	Open in IMG/M
3300025266	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)	Environmental	Open in IMG/M
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental	Open in IMG/M
3300025620	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025694	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027522	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)	Environmental	Open in IMG/M
3300027672	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)	Environmental	Open in IMG/M
3300028125	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031598	Marine microbial communities from water near the shore, Antarctic Ocean - #284	Environmental	Open in IMG/M
3300031626	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100054959	3300000101	Marine	VILVQRGKNYVVYDKQKKVVIITREKNIAVQYARQQK*
DelMOSum2010_100178966	3300000101	Marine	MMQRGKNYVVYDKHEKVVIITVDRNIAIQYARRLK*
DelMOSum2010_100192183	3300000101	Marine	MVQKGRKYIVYDKHEKIVIITVDRNIAVQYARGQYDRV*
DelMOSum2010_101476941	3300000101	Marine	VILIQRGKNYVVYDKDGKVVIITVDRHIAINYARQQK*
DelMOSpr2010_101084353	3300000116	Marine	VILVQRGKNYVVYDKRGKVVIITVDRHIAISYARQQK*
JGI20156J14371_101410592	3300001347	Pelagic Marine	VILVQKGKKYVVYGKRGKVVIITSHKNIAKGYARSLTDD*
JGI24006J15134_1000077224	3300001450	Marine	VILVQRGKNYVVYDKDEKVIIITREKNIAVQYARSQYVGVR*
JGI24006J15134_100446063	3300001450	Marine	VLIQKNKKYVVYDKLGKVVIITVDRNAAISYAKNKCGRI*
JGI24006J15134_100673111	3300001450	Marine	MVQKGRKYVVYDKDEKVVIITVDRHIAINYARQQK*
JGI24006J15134_100752033	3300001450	Marine	VILVQKGRKYVVYDKYEKVVIITVDRHIAVNYARQQK*
JGI24006J15134_101632023	3300001450	Marine	LIQRGKNYVVYDKDGKVVIITVDRHIAINYARGKYGRI*
JGI24006J15134_102075652	3300001450	Marine	VVLVQRGKNYVVYDKRGKVVIITVDRHIAVNYARQQK*
JGI24003J15210_100176046	3300001460	Marine	MVQKGKKYIVYDKHEKIVIITVDRNIAVQYARGQYDRV*
JGI24003J15210_101836722	3300001460	Marine	MVQRGRNYVVYDKYEKVVIITVDRHIAVNYARQKK*
JGI24004J15324_100705192	3300001472	Marine	MVQRGRKYVVYDKYEKVVIITVDRHIAVNYARQQK*
JGI24004J15324_100916552	3300001472	Marine	MVQRGKNYVVYDKRGKVVIITVDRHIAVNYARSKYGRI*
Ga0075478_100640763	3300006026	Aqueous	VILVQRGKNYVVYDKRGKVVIITVDRHIAVNYARQQK*
Ga0075478_101749603	3300006026	Aqueous	RTRQVVMVQRGRNYVVYDKDKKVVIITVDRHIAVNYARQQK*
Ga0075441_100764424	3300006164	Marine	MVQRGRKYVVYDKRGKVVIITLDRNIAVQYVRGKYGRI*
Ga0075441_102551952	3300006164	Marine	MIQRGKKYVVYDKHEKVVIITIDRHIAAQYARRQNDRF*
Ga0075443_100764812	3300006165	Marine	MIQRGRKYVVYDKRGKVVIITLDRNIAVQYVRGKYGRI*
Ga0075443_102079532	3300006165	Marine	MVQNGKKYVVYDKLGKVVIITVDRNVAINYARGNYSKN*
Ga0075446_100229065	3300006190	Marine	MVQRGRKYVVYDKHGKIVIITIDRNIAINYARVRYGI*
Ga0075446_102249502	3300006190	Marine	MIQRGRKYVVYDKQGKVVIITLNKNIAVQYVRGKYGRV*
Ga0075447_100736275	3300006191	Marine	MIQRGRKYVVYDKYEKVVIITVDRNIAVQYARRQK*
Ga0075447_100763691	3300006191	Marine	GRKYVVYDKHEKVVIITVDRNIALNYARGKYGGI*
Ga0075447_101630902	3300006191	Marine	MIQRGRKYVVYDKHEKVVIITVDRNIAVQYARRQK*
Ga0075447_102104833	3300006191	Marine	MIQRGRKYVVYDKDEKVVIITVDRHIAINYARGKYGGIR*
Ga0075445_100317186	3300006193	Marine	MVQNGKKYVVYDKLGKVVIITIDRNVAINYARGNYSKN*
Ga0075448_100519392	3300006352	Marine	MIQRGKKYVVYDKHEKVVIITVDRHIAAQYARRQK*
Ga0075448_100633454	3300006352	Marine	RSRQVVMIQRGRKYVVYDKDEKVVIITVDRNIAVQYARRQK*
Ga0075448_101094942	3300006352	Marine	MIQRGRKYVVYDKDEKVVIITVDRNIAVQYARRQK*
Ga0070749_105452832	3300006802	Aqueous	VILIQRGKNYVVYDKDGKVVIITVDRHIAVNYARQQK*
Ga0070754_101456503	3300006810	Aqueous	MVQRGRNYVVYDKDKKVVIITVDRHIAVNYARQQK*
Ga0075444_100076896	3300006947	Marine	MVQRGRKYVVYDKRGKVVIITLDKNIAVQYVRGKYGRV*
Ga0075444_102505462	3300006947	Marine	MVQKGRKYVVYDKDEKVVIITVDRHIAINYARGKYGGIR*
Ga0075444_102512581	3300006947	Marine	MVQKGRKYVVYDKHEKVVIITVDRNIAVQYARRQHDRVR*
Ga0075444_103069892	3300006947	Marine	MIQRGRKYVVYDKHEKVVIITVDRNIALNYARGKYGGI*
Ga0070745_10254434	3300007344	Aqueous	VILVQRGKNYVVYDKHKKVVIITVDRHIAINYARQQK*
Ga0114916_10823531	3300008221	Deep Ocean	MIQRGRKYVVYDKHGKIVIITIDRNIAINYARVRYGI*
Ga0114995_102613493	3300009172	Marine	VILIQRGKNYVVYDKDGKVVIITVDRHIAINYARGKYGRI*
Ga0114993_102176202	3300009409	Marine	VTLIQRGKNYVVYDKDGKVVIITVDRHIAVNYARQKK*
Ga0114915_10637023	3300009428	Deep Ocean	MVQKGRKYIVYDKHEKIVIITVDRNIAVQYARGKYGGI*
Ga0114915_10738814	3300009428	Deep Ocean	MVQKGRKYVVYDKYEKVVIITVDRNIALNYARGKYGGIR*
Ga0114915_10741152	3300009428	Deep Ocean	MVQKGRKYVVYDKYEKVVIITVDRNIAVNYARGRYGI*
Ga0114915_10895483	3300009428	Deep Ocean	MVQRGRNYVVYDKDEKVVIITVNKHIAINYARQQK*
Ga0114915_11520552	3300009428	Deep Ocean	MVQKGRKYVVYDKDEKVVIITVDRHIAINYARGKYGGI
Ga0114914_10021566	3300009601	Deep Ocean	MVQRGKKYIVYDKHEKVVIITVDRNIAVQYARGKYGGI*
Ga0115001_1001339012	3300009785	Marine	VQKGKNYVVYDKRGKVVIITVDRHIAISYARQQK*
Ga0118731_1129392863	3300010392	Marine	VQKGKKYVVYGERGKVVIITSHKNIAKGYARSLTDD*
Ga0133547_111672146	3300010883	Marine	LVQRGKNYVVYDKQKKVVIITREKNIAVQYARQQK*
Ga0133547_114274702	3300010883	Marine	VILIQRGKNYVVYDKRGKVVIITVDRHIAVNYARQQK*
Ga0133547_114576522	3300010883	Marine	VVLIQKNKKYVVYDKLGKVVIITVDRNAAISYAKNKCGRI*
Ga0133547_119259232	3300010883	Marine	MVQRGRKYVVYDKHEKVVIITVDRNIAIQYARRLK*
Ga0180120_101805822	3300017697	Freshwater To Marine Saline Gradient	MMQRGKNYVVYDKHEKVVIITVDRNIAIQYARRLK
Ga0212030_10253602	3300022053	Aqueous	VILVQRGKNYVVYDKRGKVVIITVDRHIAVNYARQQK
Ga0196887_10082137	3300022178	Aqueous	MVQKGRKYIVYDKHEKIVIITVDRNIAVQYARGQYDRV
Ga0207905_10655222	3300025048	Marine	VVLVQRGKNYVVYDKRGKVVIITVDRHIAVNYARQQK
Ga0207896_10176262	3300025071	Marine	VILIQRGKNYVVYDKDGKVVIITVDRHIAVNYARQKK
Ga0209535_10183097	3300025120	Marine	MVQKGRKYVVYDKDEKVVIITVDRHIAINYARQQK
Ga0209535_10769373	3300025120	Marine	MVQRGKNYVVYDKHEKVVIITVDRNIAIQYARRLK
Ga0209535_10951842	3300025120	Marine	VILVQKGRKYVVYDKDEKVVIITVDRHIAVNYARQQK
Ga0209535_10951852	3300025120	Marine	VILVQKGRKYVVYDKYEKVVIITVDRHIAVNYARQQK
Ga0209535_11163412	3300025120	Marine	MVQRGKNYVVYDKDGKVVIITVDRHIAINYARQQK
Ga0209535_11428302	3300025120	Marine	MVQRGRKYVVYDKYEKVVIITVDRHIAVNYARQQK
Ga0209336_101471343	3300025137	Marine	WVILIQRGKNYVVYDKDGKVVIITVDRHIAINYARGKYGRI
Ga0209634_10407225	3300025138	Marine	VVLIQKNKKYVVYDKLGKVVIITVDRNAAISYAKNKCGRI
Ga0209634_10656985	3300025138	Marine	MVQRGRNYVVYDKYEKVVIITVDRHIAVNYARQKK
Ga0209634_10851563	3300025138	Marine	VILVQKGKKYIVYDKHEKIVIITVDRNIAVQYARGQYDRV
Ga0209634_11454151	3300025138	Marine	VILIQRGKNYVVYDKDGKVVIITVDRHIAINYARQQK
Ga0209337_10234707	3300025168	Marine	VILIQRGKNYVVYDKDGKVVIITVDRHIAINYARGKYGRI
Ga0208031_10136062	3300025237	Deep Ocean	MIQRGKKYVVYDKHEKVVIITIDRNIATQYARRQNDRF
Ga0208031_10194942	3300025237	Deep Ocean	MIQRGRKYVVYDKHEKVVIITVDRNIAVQYARRQK
Ga0208031_10287332	3300025237	Deep Ocean	MIQRGRKYVVYDKDEKVVIITVDRNIAVQYARRQK
Ga0208031_10330862	3300025237	Deep Ocean	MVQKGKKYIVYDKHEKVVIITVDRNIAVQYARGKYGGI
Ga0208031_10527872	3300025237	Deep Ocean	IQRGRKYVVYDKHGKIVIITIDRNIAINYARVRYGI
Ga0208032_10058676	3300025266	Deep Ocean	MVQRGKKYIVYDKHEKVVIITVDRNIAVQYARGKYGGI
Ga0208032_10286321	3300025266	Deep Ocean	QVVMIQRGKKYVVYDKHEKVVIITVDRNIAVQYARRQHDRVR
Ga0208032_10290723	3300025266	Deep Ocean	MIQRGRKYVVYDKHEKVVIITVDRNIALNYARGKYGGI
Ga0208032_10316262	3300025266	Deep Ocean	MIQRGKKYVVYDKHEKVVIITVDRHIAVQYARRQK
Ga0208032_10326755	3300025266	Deep Ocean	RGKKYVVYDKHEKVVIITIDRNIATQYARRQNDRF
Ga0208032_10387491	3300025266	Deep Ocean	VMIQRGKKYVVYDKHEKVVIITVDRHIAAQYARRQK
Ga0208032_10690183	3300025266	Deep Ocean	MVQKGRKYVVYDKDEKVVIITVDRHIAINYARGKYGGIR
Ga0208814_10003086	3300025276	Deep Ocean	MIQRGRKYVVYDKRGKVVIITLDRNIAVQYVRGKYGRI
Ga0208814_10037156	3300025276	Deep Ocean	MVQRGRKYVVYDKRGKVVIITLDKNIAVQYVRGKYGRV
Ga0208814_10104476	3300025276	Deep Ocean	MVQKGRKYIVYDKHEKIVIITVDRNIAVQYARGKYGGI
Ga0208814_10171388	3300025276	Deep Ocean	MVQKGRKYVVYDKHEKVVIITVDRNIAVQYARRQHDRVR
Ga0208814_10338876	3300025276	Deep Ocean	MVQRGRKYVVYDKHGKIVIITIDRNIAINYARVRYGI
Ga0208814_10462801	3300025276	Deep Ocean	MVQKGRKYVVYDKYEKVVIITVDRNIALNYARGKYGGIR
Ga0208814_10716572	3300025276	Deep Ocean	MVQRGRKYVVYDKYEKVVIITVDRNIAVQYARRQK
Ga0208814_10796832	3300025276	Deep Ocean	MIQRGRKYVVYDKYEKVVIITVDRNIAVQYARRQK
Ga0208814_10891932	3300025276	Deep Ocean	MVQRGRKYVVYDKYEKVVIITVDRNIAVQYARRQHDRV
Ga0208814_10982432	3300025276	Deep Ocean	MIQRGRKYVVYDKQGKVVIITLNKNIAVQYVRGKYGRV
Ga0208814_11199053	3300025276	Deep Ocean	VVMVQKGRKYVVYDKHEKVVIITVDRNIAVQYARRQHDRV
Ga0209405_10248966	3300025620	Pelagic Marine	VILVQKGKKYVVYGKRGKVVIITSHKNIAKGYARSLTDD
Ga0208162_10599775	3300025674	Aqueous	MVQRGRNYVVYDKDKKVVIITVDRHIAVNYARQQK
Ga0209406_10665125	3300025694	Pelagic Marine	VILVQKGKKYVVYGKRGKVVIITSHKNIAKGYARS
Ga0208545_10193385	3300025806	Aqueous	VILVQRGKNYVVYDKQKKVVIITREKNIAVQYARQQK
Ga0208644_11103935	3300025889	Aqueous	VILVQKGKNYVVYDKRGKVVIITVDRHIAISYARQQ
Ga0209384_10055954	3300027522	Marine	MIQRGKKYVVYDKHEKVVIITIDRHIAAQYARRQK
Ga0209384_10156534	3300027522	Marine	MIQRGRKYVVYDKDEKVVIITVDRHIAINYARGKYGGIR
Ga0209384_11109223	3300027522	Marine	MVQNGKKYVVYDKLGKVVIITVDRNVAINYARGNYSKN
Ga0209384_11481332	3300027522	Marine	MIQRGKKYVVYDKHEKVVIITIDRHIAAQYARRQNDRF
Ga0209383_100062210	3300027672	Marine	MIQRGKKYVVYDKHEKVVIITVDRHIAAQYARRQK
Ga0256368_10178803	3300028125	Sea-Ice Brine	VILVQKGKNYVVYDKRGKVVIITVDRHIAINYARQQK
Ga0307488_102827781	3300031519	Sackhole Brine	VILIQRGKNYVVYDKRGKVVIITVDRHIAVNYARQKK
Ga0308019_102302302	3300031598	Marine	VVLMQNGKKYVVYDKLGKVVIITVDRNVAINYARGKYGKN
Ga0302121_100228172	3300031626	Marine	MVQRGRKYVVYDKHEKVVIITVDRNIAIQYARRLK
Ga0314858_132381_1_108	3300033742	Sea-Ice Brine	GIQRGKNYVVYDKDGKVVIITVDRHIAINYARQQK
Ga0348336_082003_762_875	3300034375	Aqueous	VILIQRGKNYVVYDKDGKVVIITVDRHIAVNYARQQK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087765

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences