Metagenome / Metatranscriptome Family F087727

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087727
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MSDAALDFGRRIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEISPTSVVHHDGVATPDP
Number of Associated Samples	82
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.18 %
% of genes near scaffold ends (potentially truncated)	15.45 %
% of genes from short scaffolds (< 2000 bps)	69.09 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (83.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (15.454 % of family members)
Environment Ontology (ENVO)	Unclassified (21.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 41.00% β-sheet: 0.00% Coil/Unstructured: 59.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF11228	DUF3027	34.55
PF01794	Ferric_reduct	33.64
PF00313	CSD	4.55
PF10745	DUF2530	2.73
PF09925	DUF2157	1.82
PF13223	DUF4031	0.91
PF07690	MFS_1	0.91
PF01494	FAD_binding_3	0.91
PF13625	Helicase_C_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.82
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.91
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.91
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	67.27 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	18.18 %
Unclassified	root	N/A	16.36 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	10.91 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	5.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	10.91 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	5.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Friedmanniella luteola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	10.91 %
Microlunatus phosphovorus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	5.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.45 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_12667_length_2094_cov_7.144222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2126	Open in IMG/M
2140918013\|NODE_3663_length_1697_cov_7.948733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1729	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0738738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2417	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11274477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1009	Open in IMG/M
3300000550\|F24TB_10129677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2420	Open in IMG/M
3300000858\|JGI10213J12805_10127656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300000956\|JGI10216J12902_103759609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1052	Open in IMG/M
3300001431\|F14TB_101306729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300002568\|C688J35102_120948881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2846	Open in IMG/M
3300003911\|JGI25405J52794_10116240	Not Available	602	Open in IMG/M
3300004463\|Ga0063356_100258681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2117	Open in IMG/M
3300004480\|Ga0062592_102544049	Not Available	515	Open in IMG/M
3300005169\|Ga0066810_10024428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1034	Open in IMG/M
3300005937\|Ga0081455_10001296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	31084	Open in IMG/M
3300005937\|Ga0081455_10004253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	16138	Open in IMG/M
3300005937\|Ga0081455_10006608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	12407	Open in IMG/M
3300005937\|Ga0081455_10024734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	5554	Open in IMG/M
3300005937\|Ga0081455_10117139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	2106	Open in IMG/M
3300005937\|Ga0081455_10126345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2006	Open in IMG/M
3300005981\|Ga0081538_10010884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	7417	Open in IMG/M
3300006058\|Ga0075432_10001262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus phosphovorus	8161	Open in IMG/M
3300006169\|Ga0082029_1151896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1591	Open in IMG/M
3300006577\|Ga0074050_11867413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1919	Open in IMG/M
3300006844\|Ga0075428_100099392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3172	Open in IMG/M
3300006845\|Ga0075421_100805790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1081	Open in IMG/M
3300006894\|Ga0079215_10514047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300006894\|Ga0079215_10632409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M
3300006918\|Ga0079216_10044475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1881	Open in IMG/M
3300007004\|Ga0079218_10104268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1958	Open in IMG/M
3300009100\|Ga0075418_10233380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	1958	Open in IMG/M
3300009100\|Ga0075418_11529446	Not Available	724	Open in IMG/M
3300009146\|Ga0105091_10178845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300009147\|Ga0114129_13490000	Not Available	503	Open in IMG/M
3300009156\|Ga0111538_10300315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2032	Open in IMG/M
3300009168\|Ga0105104_10579173	Not Available	637	Open in IMG/M
3300009610\|Ga0105340_1227555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	793	Open in IMG/M
3300009789\|Ga0126307_10146216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1891	Open in IMG/M
3300009840\|Ga0126313_10002477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	10362	Open in IMG/M
3300009840\|Ga0126313_10139282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1822	Open in IMG/M
3300009840\|Ga0126313_10638979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	859	Open in IMG/M
3300009840\|Ga0126313_10819284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	758	Open in IMG/M
3300009840\|Ga0126313_11843913	Not Available	506	Open in IMG/M
3300010037\|Ga0126304_10333992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300010038\|Ga0126315_10308032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300010038\|Ga0126315_10881301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M
3300010039\|Ga0126309_10065904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1777	Open in IMG/M
3300010041\|Ga0126312_10005008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	8935	Open in IMG/M
3300010041\|Ga0126312_10244865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300010041\|Ga0126312_10551829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	826	Open in IMG/M
3300010042\|Ga0126314_10193579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1430	Open in IMG/M
3300010145\|Ga0126321_1376846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	911	Open in IMG/M
3300010166\|Ga0126306_10056674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2728	Open in IMG/M
3300010166\|Ga0126306_10058878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2680	Open in IMG/M
3300010166\|Ga0126306_11077709	Not Available	657	Open in IMG/M
3300010999\|Ga0138505_100017386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	893	Open in IMG/M
3300011000\|Ga0138513_100039836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300011400\|Ga0137312_1030830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	817	Open in IMG/M
3300012212\|Ga0150985_101985061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	985	Open in IMG/M
3300012212\|Ga0150985_104011014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2798	Open in IMG/M
3300012469\|Ga0150984_108578398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2841	Open in IMG/M
3300012939\|Ga0162650_100002881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1828	Open in IMG/M
3300015200\|Ga0173480_10546769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300015371\|Ga0132258_10088403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	7254	Open in IMG/M
3300017965\|Ga0190266_10051224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1460	Open in IMG/M
3300017965\|Ga0190266_10110851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1151	Open in IMG/M
3300017965\|Ga0190266_11001394	Not Available	559	Open in IMG/M
3300017997\|Ga0184610_1057763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1161	Open in IMG/M
3300018028\|Ga0184608_10005117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	4216	Open in IMG/M
3300018031\|Ga0184634_10148214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1052	Open in IMG/M
3300018056\|Ga0184623_10165776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1020	Open in IMG/M
3300018067\|Ga0184611_1088350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1068	Open in IMG/M
3300018073\|Ga0184624_10050084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1688	Open in IMG/M
3300018074\|Ga0184640_10014017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2943	Open in IMG/M
3300018076\|Ga0184609_10274549	Not Available	788	Open in IMG/M
3300018081\|Ga0184625_10082300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1648	Open in IMG/M
3300018466\|Ga0190268_10001723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	4178	Open in IMG/M
3300018466\|Ga0190268_10551839	Not Available	800	Open in IMG/M
3300018469\|Ga0190270_10099424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2224	Open in IMG/M
3300018469\|Ga0190270_10857818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	921	Open in IMG/M
3300018481\|Ga0190271_10003977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	9396	Open in IMG/M
3300018481\|Ga0190271_11472636	Not Available	798	Open in IMG/M
3300018481\|Ga0190271_11990671	Not Available	690	Open in IMG/M
3300019254\|Ga0184641_1047406	Not Available	507	Open in IMG/M
3300019767\|Ga0190267_10067767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1298	Open in IMG/M
3300020020\|Ga0193738_1054567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300021073\|Ga0210378_10339807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300021445\|Ga0182009_10620450	Not Available	580	Open in IMG/M
3300027639\|Ga0209387_1076564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300027691\|Ga0209485_1034839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1231	Open in IMG/M
3300027907\|Ga0207428_10010405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	8309	Open in IMG/M
3300027909\|Ga0209382_10819380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	989	Open in IMG/M
3300028878\|Ga0307278_10046559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1967	Open in IMG/M
3300028878\|Ga0307278_10076391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1510	Open in IMG/M
3300031114\|Ga0308187_10438171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300031548\|Ga0307408_100063064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2710	Open in IMG/M
3300031731\|Ga0307405_10006932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	5625	Open in IMG/M
3300031731\|Ga0307405_10056940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2453	Open in IMG/M
3300031824\|Ga0307413_10002149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	7916	Open in IMG/M
3300031824\|Ga0307413_10750494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	816	Open in IMG/M
3300031852\|Ga0307410_11462819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300031901\|Ga0307406_10000155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	40861	Open in IMG/M
3300031901\|Ga0307406_10632033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300031995\|Ga0307409_102620989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300032005\|Ga0307411_11183056	Not Available	692	Open in IMG/M
3300034113\|Ga0364937_056601	Not Available	740	Open in IMG/M
3300034147\|Ga0364925_0021452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2061	Open in IMG/M
3300034149\|Ga0364929_0226836	Not Available	624	Open in IMG/M
3300034151\|Ga0364935_0074071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1020	Open in IMG/M
3300034354\|Ga0364943_0214727	Not Available	711	Open in IMG/M
3300034690\|Ga0364923_0015166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1703	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.91%
Host-Associated	Host-Associated	29.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.36%
Plants	Host-Associated → Plants	29.09%
Aquatic	Environmental → Aquatic	14.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.18%
Sediment	Environmental → Aquatic → Sediment	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Floodplain	Environmental → Terrestrial → Floodplain	5.45%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.73%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.27%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	5.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.64%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.09%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.18%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.18%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.45%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00814350	2140918013	Soil	MSNAALDYRHRIPRIARPSVAASPSLIRWTLRTVTFLLFGAATAIGVNLGTSAPEMSPASVVQHDVTSADR
Iowa-Corn-GraphCirc_02566390	2140918013	Soil	MSDAALDYRHRIPHIARPATAVSASLIRWSLRTVTVVLFGAATALGVSLGLSAPESSPASVVDHHVAPNQ
ICChiseqgaiiDRAFT_07387383	3300000033	Soil	MSNAALDYRHRIPRIARPSVAASPSLIRWTLRTVTFLLFGAATAIGVNLGTSAPEMSPASVVQHDVTSADR*
ICChiseqgaiiFebDRAFT_112744771	3300000363	Soil	MSDAALDYRHRIPHIARPATAVSASLIRWSLRTVTVVLFGAATALGVSLGLSAPESSPASVVDHHVAPNQ*
F24TB_101296774	3300000550	Soil	MSDAALDYRRRIPRIVRPSVTASPSLIRWTLRMMTVMLFGVATAIGVNLGIGAPEISPTSVVNHDHVASP*
JGI10213J12805_101276561	3300000858	Soil	MSDAALDFGRRIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEISPTSVVHHDGVATPDP*
JGI10216J12902_1037596092	3300000956	Soil	MSDAALDYRHRIPRIARPLTAASPSLIRWTLRVVTVMLFGLATLIGVTLGLSAPESSPTSVVDHHVVPNQ*
F14TB_1013067292	3300001431	Soil	MSDAALDFGRRIPRFGRLSVAVSPSLIRWTLRLVTLLLFAAATAFGVNLGMNAPEIAPTSVLQHDGAVSPNL*
C688J35102_1209488812	3300002568	Soil	MSDTALDYGRRIPLARPSVAASPSLIRWSLRIVTVMLFGAATAFGVSLGISAPETAPTSVVQHHVAPTGP*
JGI25405J52794_101162402	3300003911	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRRIPRIVRPSVTASPSLIRWTLRXVTVMLFGVATAIGXNLGIGAPEISPTSVVNHDHVASP*
Ga0063356_1002586812	3300004463	Arabidopsis Thaliana Rhizosphere	MSDAALDCRRRIPHIALSPTAVSPSLIRWTLRLVTVMLFGAATAIGVSLGLSAPESSPTLAVDHHVASNQ*
Ga0062592_1025440491	3300004480	Soil	MSDAALDYRHRIPRIARPVTAASPSLIRWTLRVVTVMLFGLATLIGVTLGLSAPESSPTSVVDHHVVPNQ*
Ga0066810_100244282	3300005169	Soil	AVDYRHRIPRIARPSAAASPSLIRWTLRTVTVLLFGAATAIGVNLGISAPEISPASVVQHDTVSADR*
Ga0081455_1000129612	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRLILRIARPSVTAPPSLIRWTLRIVTLTLFGVATAIGVTLGIGAPEISPTSVVHHDHVASP*
Ga0081455_100042537	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRRIPRIVRPSVTASSPLLIRWTLRIVTVLLFGVATAVGVNLGIGAPEISPTSVVHHDGVASP*
Ga0081455_100066084	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRRIPRIVRPSVTASPSLIRWTLRIVTVMLFGVATAIGINLGIGAPEISPTSVVNHDHVASP*
Ga0081455_100247346	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRRIPRIARLSVTASPTLIRWTLRIVTVMLFGTATAIGVNLGIGAPEVSPTSVVNHDRVASP*
Ga0081455_101171394	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYRRRIPRIVRPSVTASPSLIRWTLRMVTVMLFGVATAVGVNLGIGAPEISPTSVVNQDRVASP*
Ga0081455_101263453	3300005937	Tabebuia Heterophylla Rhizosphere	MSDAALDYQRRIPRITRSSVTASSSLIRWTLRIVTVMLFGAATAIGVNLGVSAPEVSPISVVHDGQVASP*
Ga0081538_1001088410	3300005981	Tabebuia Heterophylla Rhizosphere	MSDTALDYRRRIPLTTRPSTAASPSLIRWSLRIATVILFGAATAFGVSVGLNAPEISPAVQHHVAPTEP*
Ga0075432_100012626	3300006058	Populus Rhizosphere	MSDTALDYRRRIPLITRPSVAPSPSLIRWSLRIVTVMLFSAATAFGVSLGVSAPETSPTSVVQHPVAPTGP*
Ga0082029_11518961	3300006169	Termite Nest	MSDAALDFGRRIPRLARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVSLGLNAPEISPTSIVHHDGPASPKL*
Ga0074050_118674133	3300006577	Soil	MSNAAVDYRHRIPRIARPSAAASPSLIRWTLRTVTVLLFGAATAIGVNLGISAPEISPASVVQHDTVSADR*
Ga0075428_1000993925	3300006844	Populus Rhizosphere	MSDAALDYRRRIPRIVRPSVTASPPLIRWTLRIVTLTLFGVATAIGVNLGIGAPEISPTSVVHHDHVASP*
Ga0075421_1008057902	3300006845	Populus Rhizosphere	MSDAALDYRRRIPRIVRPSVTASPPLIRWTLRIVTLSLFGVATAIGVNLGIGAPEISPTSVVHHDHVASP*
Ga0079215_105140471	3300006894	Agricultural Soil	MSDAALDYRRRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDISPTVVHHGDVASP*
Ga0079215_106324092	3300006894	Agricultural Soil	MSDAALDFGRRIPRTARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEISPTSVVHHDGVATPDP*
Ga0079216_100444752	3300006918	Agricultural Soil	MSDAALDYGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVTTPDL*
Ga0079218_101042682	3300007004	Agricultural Soil	MSDAALDFGRRIPRIARLSVAVSPSLIWWTLRLVTLLLFGAATAVGVNVGMNAPEISPTSVVHHDGVATPDP*
Ga0075418_102333801	3300009100	Populus Rhizosphere	MSDAALDFGRRIPRLVRLSVAVSPSLIRWTLRLVTVLLFAAATAVGVNLGMNAPEIPPTSVVHHDGAAAPNL*
Ga0075418_115294462	3300009100	Populus Rhizosphere	MSDAALDFGRLFPRIARLSVAVSPSLIRWTLRLVTLLLFVAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP*
Ga0105091_101788452	3300009146	Freshwater Sediment	MSHAALDYRHRIPRIERSSVAASPSLIRWTLRTVTVVLFAGATALGVNLGLSAPEISPASVVHHDVASPDR*
Ga0114129_134900002	3300009147	Populus Rhizosphere	MSDAALDFGRRIPRLARLSVAVSPSLIRWTLRLVTLLLFAAATAFGVSLGMNAPEIAPTSVVHDDRVASPDP*
Ga0111538_103003151	3300009156	Populus Rhizosphere	YRRRIPRIVRPSVTASPPLIRWTLRIVTLTLFGVATAIGVNLGIGAPEISPTSVVHHDHVASP*
Ga0105104_105791731	3300009168	Freshwater Sediment	TLSNAALDYRRRIPRLARPSVAASPSLIRWTLRTVTFVLFGAATAIGVNLGMSAPDISPASVVQHGVVSADR*
Ga0105340_12275552	3300009610	Soil	MSDAALDFGRRFPRIARLSLAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP*
Ga0126307_101462162	3300009789	Serpentine Soil	MSDAALDYGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL*
Ga0126313_100024772	3300009840	Serpentine Soil	MSEAVLTVARRIPRIRRLSVAASPSLIRWTLRLVTLLLFGAATAVGVNVGMDAPEISPASVVHHDGVASPDL*
Ga0126313_101392822	3300009840	Serpentine Soil	MSDATLELGRRIPRIARLSVAVSPSLIRWTLRTVTAILFAAATAFGVSLGMRAPESPPTSVDNHHVAASNQ*
Ga0126313_106389792	3300009840	Serpentine Soil	MSDTALDYRRRIPRILRPSLTASASLIRWSLRITTVMLFSAATAIGVNLGMSAPEIPPTSVVQHYVAQSEP*
Ga0126313_108192842	3300009840	Serpentine Soil	MSDTTLDYRRPIPDITRSSLAASPSLVRWSLRIVTVLIFTAATAFGVSVGMGAPEISPTSVVQQNTAPTNP*
Ga0126313_118439132	3300009840	Serpentine Soil	MSDAALDCGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL*
Ga0126304_103339922	3300010037	Serpentine Soil	MSDAALDYRRRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDISPTVVHHGHVASP*
Ga0126315_103080322	3300010038	Serpentine Soil	MSEAALTFARRIPRIRRLSVAASPSLIRWTLRLVTLLLFGAATAVGVNVGMDAPEISPASVVHRDGVASPDL*
Ga0126315_108813012	3300010038	Serpentine Soil	MSDTTLDYRRPIPDITRSSLAASPSLVRWSLRIVTILIFAAATAFGVSVGMGAPEISPTSVVQQNTAPTNP*
Ga0126309_100659042	3300010039	Serpentine Soil	MSDAALDYGRRIPRIARLSVAASPSLIWWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL*
Ga0126312_100050084	3300010041	Serpentine Soil	MSDATLELGRRIPRIARFSVAVSPSLIRWTLRTVTAILFAAATAFGVSLGMSAPESPPTSVDNHHVAASNQ*
Ga0126312_102448652	3300010041	Serpentine Soil	MSEAALSFARRIPRIRRLSVAASPSLIRWTLRLVTLLLFGAATAFGVNVGMDAPEISPASVVHHDGVASPDL*
Ga0126312_105518292	3300010041	Serpentine Soil	MSDAALDYRRRIPRIARPSVAASPSLIRWSLRTVTVLLFAAATAFGISLGMSAPEIPPTSVVQHHVAPTEP*
Ga0126314_101935792	3300010042	Serpentine Soil	MSDTALDYRRRIPRIVRPSLTASPSIIRWSLRIMTVMLFSAATAIGVSLGTSAPEIPPTSVVQHYVAQSEP*
Ga0126321_13768461	3300010145	Soil	SRQENHQMSDAALDYRRRIPRIVRPSAAAPPSLIRWTLRVATVMLFGVATAIGVNLGIGAPEISPTSVVHHDHVASP*
Ga0126306_100566744	3300010166	Serpentine Soil	RRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDISPTVVHHGDVASP
Ga0126306_100588784	3300010166	Serpentine Soil	MSEAVLTFARRTPRIRRLSVAASPSLIRWTLRLVTLLLFGAATAVGVNVGMDAPEISPASVVHHDGVASPDL*
Ga0126306_110777091	3300010166	Serpentine Soil	TMSEAALSFARRIPRIRRLSVAASPSLIRWTLRLVTLLLFGAATAVGVNVGMDAPEISPASVVHRDGVASPDL*
Ga0138505_1000173861	3300010999	Soil	MSNAALDYRHRIPRIARPSVAASPSLIRWTLRTLTIVLFAGATALGVNLGLSAPEISPASVVHHGEASPDR*
Ga0138513_1000398362	3300011000	Soil	MSDAALDYRRRIPRITRPSITTSSSLIRWTLRTVTVMLFGVATAIGVNLGIGAPEISPTSVVHHDRVASP*
Ga0137312_10308301	3300011400	Soil	MSDAALDFGRLFPRIARLSVAVSPSLIRWTLRLVTLLLFVAATAVGVNVGMNAPEIAPT
Ga0150985_1019850612	3300012212	Avena Fatua Rhizosphere	SSHARRITMSNAALDYRRRIPRLAPPSVAASPSLIRWTLRTVTLVLFGAATAIGVDLGTSAPEISPASVVQHDVVSADR*
Ga0150985_1040110142	3300012212	Avena Fatua Rhizosphere	MSDTALDYGRRIPLARPSVAASPSLIRWSLRIVTVMLFGAATAFVSLGISAPETAPTSVVQHHVAPTGP*
Ga0150984_1085783983	3300012469	Avena Fatua Rhizosphere	MSDTALDYGRRIPLARPSVAASPSLIRWSLRIVTVMLFGAATAFGVSLGISAPETGPTSVVQHHVAPTGP*
Ga0162650_1000028812	3300012939	Soil	MSNAALDYRHRIPRIARPSVAASPSLIRWTLRTVTIVLFGAATALGVNLGLSAPEISPAAVEHHDLASLDR*
Ga0173480_105467692	3300015200	Soil	MSDAALDYRHRIPRIARPVTAASPSLIRWTLRVVTVMLFGLATLIGVTLGLSAPESSPASVVDHHVVPNQ*
Ga0132258_100884036	3300015371	Arabidopsis Rhizosphere	MSDAAYELGSRIPGIARLSVAAPPWLIRWTLRLVTVGLFGAATAVGVSLGMGAPDISPTSLVHDHAAASDR*
Ga0190266_100512242	3300017965	Soil	MSDAALDFGRLFPRIARLSVAVSPSLIRWTLRLVTLLLFVAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP
Ga0190266_101108511	3300017965	Soil	MSDAALDYQRRIPRITRSSITPSPSLIRWTLRTLTVLLFGAATAIGVNLGIGAPEISPTSVVHHDRVASP
Ga0190266_110013941	3300017965	Soil	MSNAALDYRHRIPRIARPSVAASPSLIRWTLRTLTIVLFAGATALGVNLGLSAPEISPASVVHHDVASPDR
Ga0184610_10577631	3300017997	Groundwater Sediment	MSNAALDYRRRIPRLARPSVAASPSLIRWTLRTVTIVLFGAATAIGVNLGMSAPEISPAS
Ga0184608_100051173	3300018028	Groundwater Sediment	MSNAALDYRRRIPRLARPSVAASPSLIRWTLRTVTLVLFGAATAIGVDLGTSAPEISPASVVQHDVMSADR
Ga0184634_101482142	3300018031	Groundwater Sediment	MSNAALDYRRRIPRLARLSVAASPSLIRWTLRTVTLVLFGAATAIGVDLGTSAPEISPASVVQHDVMSADR
Ga0184623_101657762	3300018056	Groundwater Sediment	MSNAALDYRRRIPRLARPSVAASPSLIRWTRRTVTLVLFGAATAIGVDLGPSAPEISPASVVQHDVMSADR
Ga0184611_10883502	3300018067	Groundwater Sediment	MSNAALDYRRRIPRLARLSVAASPSLIRWTLRTVTLVLFGAATAIGVDLGTSAPEISPASVVQHDVVSADR
Ga0184624_100500842	3300018073	Groundwater Sediment	MSDAALDFARQIPRIARPSVAVSPSLIRWTLRLVTLLLFGAATAVGVDVGMGAPEISPSVVNHHRVAAPDL
Ga0184640_100140173	3300018074	Groundwater Sediment	MSNAALDYRRRIPRLARPSVAASPSLIRWTLRTVTLVLFGAATAIGVDLGTSAPEISPASVVQHDVVSADR
Ga0184609_102745492	3300018076	Groundwater Sediment	MSDAALDLARRIPRIARLSVAVSPSLIRWTLRLVTLLLFGGATAVGVNVGMNAPEIPPTSVVYHDRVASPDR
Ga0184625_100823002	3300018081	Groundwater Sediment	MSDAALDFARQIPRIARPSVAVSPSLIRWTLRLVTLLLFGAATAVGVDVGMGAPEISPTSVVNHHRVAAPDL
Ga0190268_100017235	3300018466	Soil	MSDAALVFGRLFPRIARLSVAVSPSLIRWTLRLVTLLLFVAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP
Ga0190268_105518392	3300018466	Soil	MSDAALDYRRRIPRITRPSITTSSSLIRWTLRTVTVMLFGVATAIGVNLGIGAPEISPTSVVHHDRVASP
Ga0190270_100994244	3300018469	Soil	MSDAALDFGRRIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNAGMGAPEISPTSVVNHDRVAPPDL
Ga0190270_108578182	3300018469	Soil	SYLRRITMSDAALDYQRRIPRITRSSITPSPSLIRWTLRTLTVLLFGAATAIGVNLGIGAPEISPTSVVHHDRVASP
Ga0190271_100039776	3300018481	Soil	MSDAALDFGRRIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNAGMGAPEISPTSVVNHDRAAPPDL
Ga0190271_114726361	3300018481	Soil	MSDAALDFGRRIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEISPTSVVHHDGVATPDP
Ga0190271_119906711	3300018481	Soil	MSDAALDFGRQIPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNAGMNAPEISPTSVVHHDGVATPDA
Ga0184641_10474062	3300019254	Groundwater Sediment	MSDTALDYRRRIPRIVRPSLTASPSLIRWSLRIMTVVLFSAATAIGVSLGMSAPEIPPTSVVQHYVAQSEP
Ga0190267_100677671	3300019767	Soil	MSDTALDYRRRIPRIVRLSLTASPSLIRWSLRIMTVMLFAAATAFGVSLGMSAPEIAPTSVVQQYVAQSEP
Ga0193738_10545672	3300020020	Soil	MPNAALDYRHRIPRIARPSVAASPSLIRWTLRTLTIVLFAGATALGVNLGLSAPEISPASVVHHDVASPDR
Ga0210378_103398072	3300021073	Groundwater Sediment	MSDAALDLARRIPRIARLSVAVSPSLIRWTLRLVTLLLFGGATAVGVNVGMSAPEIPPTSVV
Ga0182009_106204501	3300021445	Soil	MSDTALDYGRRIPLARPSVAASPSLIRWSLRIVTVMLFGAATAFGVSLGISAPETAPTSVVQHHVAPTGP
Ga0209387_10765642	3300027639	Agricultural Soil	MSDAALDYRRRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDISPTVVHHGDVASP
Ga0209485_10348392	3300027691	Agricultural Soil	MSDAALDYGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVTTPDL
Ga0207428_100104058	3300027907	Populus Rhizosphere	MSDTALDYRRRIPLITRPSVAPSPSLIRWSLRIVTVMLFSAATAFGVSLGVSAPETSPTSVVQHPVAPTGP
Ga0209382_108193801	3300027909	Populus Rhizosphere	ASRQENHHMSDAALDYRRRIPRIVRPSVTASPSLIRWTLRIVTLTLFGVATAIGVNLGIGAPEISPTSVVHHDHVASP
Ga0307278_100465592	3300028878	Soil	MSNAAVDYRRRIPRVARPSVAASPSLIRWTLRTVTVVLFGVATAIGVNLGISAPENSPASVVQHDTVSADR
Ga0307278_100763912	3300028878	Soil	MSNAALDYRHRIPRIARPAVAASPSLIRWTLRTVTIVLFGAATAIGVNLGMSAPEISPASVVHRGVASPDR
Ga0308187_104381712	3300031114	Soil	SHARRITLSNAALDYRRRIPRIARPSVAVSPSLIRWTLRTVTVLLFGAATAIGVNLGMGAPEISPASVVQHDMVSAGR
Ga0307408_1000630642	3300031548	Rhizosphere	MSDAALDCGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL
Ga0307405_100069327	3300031731	Rhizosphere	MSDTTLDYRRPIPHITRSSLAASPSLVRWSLRIVTVLIFAAATAFGVSVGMGAPETSPTSLVQQNTAPMNP
Ga0307405_100569402	3300031731	Rhizosphere	MSDTALDYRRRIPRILRPSLTASASLIRWALRIMTVMLFSAATAIGVNLGMSAPEIPPTSVVQHYVAQSEP
Ga0307413_100021492	3300031824	Rhizosphere	MSDTALDYRRRIPRILRPSLTASASLIRWSLRITTVMLFSAATAIGVNLGMSAPEIPPTSVVQHYVAQSEP
Ga0307413_107504941	3300031824	Rhizosphere	MSDAALDYQRRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDISPTVVHHGHVASP
Ga0307410_114628191	3300031852	Rhizosphere	MSDAALDYQRRIPRITRSSVAASPSLIRWTLRIVTIMLFGAATAIGVNLGVSAPDIS
Ga0307406_1000015516	3300031901	Rhizosphere	MSDTTLHYRRPIPHITRSSLAASPSLVRWSLRIVTVLIFAAATAFGVSVGMGAPETSPTSLVQQNTAPMNP
Ga0307406_106320332	3300031901	Rhizosphere	MSDAALDYGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL
Ga0307409_1026209892	3300031995	Rhizosphere	MSDTALDYRRRIPRILRPSLTASASLIRWSLRITTVMLFSAATAIGVNLGMSAPEIPPTS
Ga0307411_111830562	3300032005	Rhizosphere	MLDAALDYGRRIPRIARLSVAVSPSLIRWTLRLVTVLLFGAATALGVNVGMNAPEISPTSVVQQDGVATPDL
Ga0364937_056601_121_339	3300034113	Sediment	MSDAALDFGRRFPRIARLSFAVSPSLIRLTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHHDGVASPDR
Ga0364925_0021452_1123_1341	3300034147	Sediment	MSDAALDFGRRFPRIARLSVAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP
Ga0364929_0226836_229_447	3300034149	Sediment	MSDAALDFGRRFPRIARLSLAVSPSLIRLTLRLVTLLLFGAATAVGVNVGMNAPEIPPTSVVHHDRVASPDS
Ga0364935_0074071_298_516	3300034151	Sediment	MSDAALDFGRRFPRIARLSFAVSPSLIRLTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP
Ga0364943_0214727_226_444	3300034354	Sediment	MSDAALDFARQIPRIARLSVAVTPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP
Ga0364923_0015166_181_399	3300034690	Sediment	MSDAALDFGRRFPRIARLSLAVSPSLIRWTLRLVTLLLFGAATAVGVNVGMNAPEIAPTSVVHDDRVASPDP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087727

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences