Metagenome Family F087721

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087721
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL
Number of Associated Samples	81
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	34.86 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	84.55 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.909 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.30% β-sheet: 2.70% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF14019	DUF4235	30.00
PF13449	Phytase-like	21.82
PF13191	AAA_16	7.27
PF13472	Lipase_GDSL_2	6.36
PF07504	FTP	2.73
PF13183	Fer4_8	2.73
PF00082	Peptidase_S8	1.82
PF12840	HTH_20	1.82
PF00012	HSP70	0.91
PF01841	Transglut_core	0.91
PF13358	DDE_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3227	Zn-dependent metalloprotease (Neutral protease B)	Posttranslational modification, protein turnover, chaperones [O]	2.73
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.45 %
Unclassified	root	N/A	16.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.00 %
Unclassified	root	N/A	16.36 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.18 %
Unclassified	root	N/A	16.36 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.64 %
Sporichthyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales	2.73 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.91 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.64 %
Sporichthyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae	2.73 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.64 %
unclassified Sporichthyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae	2.73 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.64 %
Sporichthyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	2.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Mycobacterium talmoniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium talmoniae	0.91 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01EUELN	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300002568\|C688J35102_120752429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium talmoniae	1487	Open in IMG/M
3300003313\|P32013IDBA_1028404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1864	Open in IMG/M
3300003987\|Ga0055471_10004918	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300003998\|Ga0055472_10194532	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300004114\|Ga0062593_100198190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1595	Open in IMG/M
3300004114\|Ga0062593_101306441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300004157\|Ga0062590_101930852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300004480\|Ga0062592_100025716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2796	Open in IMG/M
3300005093\|Ga0062594_101710012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	658	Open in IMG/M
3300005093\|Ga0062594_102802535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300005329\|Ga0070683_100210146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1849	Open in IMG/M
3300005548\|Ga0070665_101904347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	600	Open in IMG/M
3300006169\|Ga0082029_1387214	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300006755\|Ga0079222_12178815	Not Available	550	Open in IMG/M
3300006791\|Ga0066653_10570673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300009098\|Ga0105245_11832175	Not Available	660	Open in IMG/M
3300009148\|Ga0105243_11201831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300009553\|Ga0105249_11054458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300009789\|Ga0126307_10000488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25512	Open in IMG/M
3300010036\|Ga0126305_10319770	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300010039\|Ga0126309_10046812	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300010039\|Ga0126309_10080067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1638	Open in IMG/M
3300010045\|Ga0126311_10292803	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300011000\|Ga0138513_100034989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300011422\|Ga0137425_1006537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2271	Open in IMG/M
3300011422\|Ga0137425_1179780	Not Available	529	Open in IMG/M
3300012043\|Ga0136631_10058764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1440	Open in IMG/M
3300012043\|Ga0136631_10489072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	504	Open in IMG/M
3300012091\|Ga0136625_1189271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	701	Open in IMG/M
3300012093\|Ga0136632_10100123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1341	Open in IMG/M
3300012094\|Ga0136638_10093614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1303	Open in IMG/M
3300012094\|Ga0136638_10335366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300012212\|Ga0150985_100481685	Not Available	593	Open in IMG/M
3300012212\|Ga0150985_121998021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300012212\|Ga0150985_122750730	Not Available	590	Open in IMG/M
3300012469\|Ga0150984_104991193	Not Available	563	Open in IMG/M
3300012527\|Ga0136633_1193255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300012527\|Ga0136633_1233585	Not Available	678	Open in IMG/M
3300012530\|Ga0136635_10002542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5778	Open in IMG/M
3300012530\|Ga0136635_10406685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300012531\|Ga0136640_10329280	Not Available	646	Open in IMG/M
3300012668\|Ga0157216_10105812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1370	Open in IMG/M
3300012680\|Ga0136612_10033553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2575	Open in IMG/M
3300012682\|Ga0136611_10224247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1271	Open in IMG/M
3300012682\|Ga0136611_10759620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300012960\|Ga0164301_10171011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1353	Open in IMG/M
3300012988\|Ga0164306_10174307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1488	Open in IMG/M
3300012988\|Ga0164306_11110497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300014254\|Ga0075312_1071893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	686	Open in IMG/M
3300014326\|Ga0157380_10579066	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300015077\|Ga0173483_10225566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	877	Open in IMG/M
3300015084\|Ga0167654_1002299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3949	Open in IMG/M
3300015086\|Ga0167655_1056398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300015200\|Ga0173480_11102950	Not Available	530	Open in IMG/M
3300015371\|Ga0132258_11052392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2057	Open in IMG/M
3300017695\|Ga0180121_10004710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5344	Open in IMG/M
3300017695\|Ga0180121_10144447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300017787\|Ga0183260_10450649	Not Available	847	Open in IMG/M
3300017789\|Ga0136617_10029815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4862	Open in IMG/M
3300017789\|Ga0136617_10038369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4258	Open in IMG/M
3300017789\|Ga0136617_11375401	Not Available	527	Open in IMG/M
3300017965\|Ga0190266_10008192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2542	Open in IMG/M
3300017965\|Ga0190266_10122442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1115	Open in IMG/M
3300018422\|Ga0190265_10841693	Not Available	1040	Open in IMG/M
3300018429\|Ga0190272_10236882	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300018429\|Ga0190272_10685022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	919	Open in IMG/M
3300018429\|Ga0190272_10753433	Not Available	887	Open in IMG/M
3300018429\|Ga0190272_11574553	Not Available	672	Open in IMG/M
3300018429\|Ga0190272_11869767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300018429\|Ga0190272_11987710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	615	Open in IMG/M
3300018432\|Ga0190275_10325700	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300018432\|Ga0190275_10411802	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300018432\|Ga0190275_12788239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300018466\|Ga0190268_10198504	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300018466\|Ga0190268_12128790	Not Available	521	Open in IMG/M
3300018469\|Ga0190270_10290538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1450	Open in IMG/M
3300018469\|Ga0190270_10499370	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300018476\|Ga0190274_10252085	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300018476\|Ga0190274_11641389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	736	Open in IMG/M
3300018481\|Ga0190271_10298508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1671	Open in IMG/M
3300018481\|Ga0190271_12724629	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300018482\|Ga0066669_11391520	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300018910\|Ga0193598_1048012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300018920\|Ga0190273_10106032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1585	Open in IMG/M
3300019377\|Ga0190264_10013324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2536	Open in IMG/M
3300019767\|Ga0190267_10105712	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1131	Open in IMG/M
3300019767\|Ga0190267_10164656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300019867\|Ga0193704_1084759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300020181\|Ga0196958_10155025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	793	Open in IMG/M
3300021363\|Ga0193699_10085870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300022908\|Ga0247779_1137152	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300025901\|Ga0207688_10875305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300025918\|Ga0207662_10841592	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300025940\|Ga0207691_11727483	All Organisms → cellular organisms → Bacteria → Terrabacteria group	506	Open in IMG/M
3300025944\|Ga0207661_10400997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1244	Open in IMG/M
3300025945\|Ga0207679_11945491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	536	Open in IMG/M
3300026023\|Ga0207677_11885002	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300026142\|Ga0207698_12096515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300027618\|Ga0208736_1057516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	960	Open in IMG/M
3300027647\|Ga0214468_1016262	All Organisms → cellular organisms → Bacteria	2058	Open in IMG/M
3300028824\|Ga0307310_10225959	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300030336\|Ga0247826_10627376	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300031164\|Ga0307502_10086885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300031548\|Ga0307408_101458507	Not Available	646	Open in IMG/M
3300031852\|Ga0307410_11166083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	670	Open in IMG/M
3300031996\|Ga0308176_10013427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5858	Open in IMG/M
3300032080\|Ga0326721_10176286	Not Available	1109	Open in IMG/M
3300034145\|Ga0334963_096294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	15.45%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.91%
Aquatic	Environmental → Aquatic	22.73%
Plants	Host-Associated → Plants	15.45%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.09%
Freshwater	Environmental → Aquatic → Freshwater	19.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.36%
Marine	Environmental → Aquatic → Marine	1.82%
Sediment	Environmental → Aquatic → Sediment	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%
Grass	Engineered → Solid Waste → Grass	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.82%
Ice	Environmental → Aquatic → Freshwater → Ice	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.45%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.73%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Sand	Environmental → Terrestrial → Soil → Sand	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.00%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	19.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.82%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.91%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	18.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.45%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.55%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.91%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.91%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003313	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012091	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012094	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012527	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012531	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ864 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015086	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020181	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027618	Polar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031164	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300034145	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_00066720	2170459017	Switchgrass, Maize And Mischanthus Litter	AGPIAYARRVLPALRDHRGKPAAPLRLLAVLVCRDAAAGAPVLVPVVRWATDLL
C688J35102_1196795802	3300002568	Soil	MLPLLRDPRGRPAVTVRLLAVAVVLGMLLLAAPVLVPVVRWATGAVF*
C688J35102_1207524292	3300002568	Soil	VLPALRDSRGKPAAPMRLLAALVVLGMVAIAAPAIVPVLRWVSETFL*
P32013IDBA_10284042	3300003313	Ore Pile And Mine Drainage Contaminated Soil	VRRPYARVVLPALRDSRGKPAAPLRLLALLVALGMLALAAPAVVPVLRWLVGAVL*
Ga0055471_100049181	3300003987	Natural And Restored Wetlands	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL*
Ga0055472_101945322	3300003998	Natural And Restored Wetlands	VVLPALRDDRGKPAGPLRLLAALVALGLLMLATPVLVPLVRWTAGLF*
Ga0062593_1001981902	3300004114	Soil	VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL*
Ga0062593_1013064411	3300004114	Soil	MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATDLL*
Ga0062590_1019308522	3300004157	Soil	VLPALRDHRGKPAAPLRLLAVLVVLGMVLLAAPVLVPVVRWATGLL*
Ga0062592_1000257162	3300004480	Soil	MLPALRDQRGKPAAPLRLLAVLIVVGMLVLTAPVLVPMLRWATDLVR*
Ga0062594_1017100122	3300005093	Soil	VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL
Ga0062594_1028025351	3300005093	Soil	VLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL*
Ga0070683_1002101462	3300005329	Corn Rhizosphere	VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL*
Ga0070665_1019043472	3300005548	Switchgrass Rhizosphere	VLPALRDSRGKPAAPRRLLALLVVLGMLAIAAPAIVPIMRWVSETFL*
Ga0082029_13872142	3300006169	Termite Nest	VLQALRDSRGKPSTPLRVLAALVVLGMLTLAAPVLVPLLRWASDALL*
Ga0079222_121788151	3300006755	Agricultural Soil	VLPALRDSRGKPAAPLRLLAALVVLGMLAIAAPAIVPVLRWVSGTFF*
Ga0066653_105706731	3300006791	Soil	PSYARQVLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL*
Ga0105245_118321752	3300009098	Miscanthus Rhizosphere	VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL*
Ga0105243_112018313	3300009148	Miscanthus Rhizosphere	VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPLLVPVVRWATDLL*
Ga0105249_110544583	3300009553	Switchgrass Rhizosphere	VLPALRDQRGKPAGPLRLLAVLVLMGMLLLAAPVLIPLLQWVTGAVL*
Ga0126307_100004882	3300009789	Serpentine Soil	VLPALRDHRGKPSAPLRLVAALVVLGMLTIAAPVLVPLLRWASGALL*
Ga0126305_103197702	3300010036	Serpentine Soil	VLPALRDHLGKPSAPLRLVAVLVVLGMLTIAAPVLVPLLRWASGALL*
Ga0126309_100468122	3300010039	Serpentine Soil	MLPALRDRRGKPAAPIRLLAVLVVLGMILIAAPVLVPVVRWAADTFF*
Ga0126309_100800672	3300010039	Serpentine Soil	MLPALRDQRGKPAAPLRLLAVLVVVGMLLIAAPVLVPVVRWTADFLR*
Ga0126311_102928032	3300010045	Serpentine Soil	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGTLL*
Ga0138513_1000349892	3300011000	Soil	MLPALRDHRGKPAAPLRLLAVLVVLGMLMLAAPVLVPVVRWATGLL*
Ga0137425_10065373	3300011422	Soil	MGVLPALRDQRGKPAGPLRLLAVLVLVGMLMIAAPVLVPVLRWASSLL*
Ga0137425_11797802	3300011422	Soil	PALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLRWATDLVR*
Ga0136631_100587642	3300012043	Polar Desert Sand	MLPALRDKRGKPAAPLRVLAVLVLLGLLLIAAPVLVPLLSWAADLIL*
Ga0136631_104890721	3300012043	Polar Desert Sand	IVPSYPRQVLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF*
Ga0136625_11892712	3300012091	Polar Desert Sand	VLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF*
Ga0136632_101001233	3300012093	Polar Desert Sand	SYPRQVLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF*
Ga0136638_100936142	3300012094	Polar Desert Sand	VLPALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVATLS*
Ga0136638_103353662	3300012094	Polar Desert Sand	VLPALRDPRGRPAAPLRLLAFLVVVGMLMLAAPALLPVIRWVVGLF*
Ga0150985_1004816852	3300012212	Avena Fatua Rhizosphere	MLPALRDARGKPAAPLLLLTVLVVLGLIVPVAPLIIDVLRWATGLIV*
Ga0150985_1219980212	3300012212	Avena Fatua Rhizosphere	VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL*
Ga0150985_1227507302	3300012212	Avena Fatua Rhizosphere	MLPARRDHRGKPAGPLRLLAVLVLLGMLLLAAPVLVPLLQWVTGAFL*
Ga0150984_1049911931	3300012469	Avena Fatua Rhizosphere	MLPALRDARGKPAAPLRLLAVLVVLGLIMPVAPLIIDVLRWATGLIV*
Ga0136633_11932552	3300012527	Polar Desert Sand	MLPALRDKRGQPAAPLRLLAVLVLFGLLLIAAPVLIPLLSWAADLFL*
Ga0136633_12335852	3300012527	Polar Desert Sand	APSYAVRMLPALRDKRGKPAAPLRLLAVLVLLGMLLIAAPVLLPVLSWAADLFL*
Ga0136635_100025424	3300012530	Polar Desert Sand	MLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL*
Ga0136635_104066852	3300012530	Polar Desert Sand	MLPALRDKRGKPAAPLRVLAVLVVLGLLLIAAPVLVPLVSWAADVLL*
Ga0136640_103292802	3300012531	Polar Desert Sand	PALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVATLS*
Ga0157216_101058121	3300012668	Glacier Forefield Soil	VLPALRDQRGKPAVPIRLLAALVLLGMLGLSTPVVVPLVRLAAAALF*
Ga0136612_100335532	3300012680	Polar Desert Sand	VLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL*
Ga0136611_102242472	3300012682	Polar Desert Sand	MLPALRDNRGKPAAPLRVLAVLVLLGLLLIAAPVLVPLLSWAADLIL*
Ga0136611_107596201	3300012682	Polar Desert Sand	VLPALRDHNGRPAGSVRLLAALVVLGMLALAAPAVLPLVRWFVATLS*
Ga0164301_101710112	3300012960	Soil	DHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL*
Ga0164306_101743071	3300012988	Soil	LRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL*
Ga0164306_111104971	3300012988	Soil	VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGL
Ga0075312_10718931	3300014254	Natural And Restored Wetlands	PRHRLAGVLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL*
Ga0157380_105790662	3300014326	Switchgrass Rhizosphere	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVIVPLLRWASGALL*
Ga0173483_102255661	3300015077	Soil	PRRVLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL*
Ga0167654_10022994	3300015084	Glacier Forefield Soil	VLPALRDHRGKPAGPLRLLAVLVVLGMVLLAAPVLVPVVRWATGLL*
Ga0167655_10563982	3300015086	Glacier Forefield Soil	MLPALRDGRGQPAGPMRLLAALIVLGMLALAAPVLVPVVRWAAATLL*
Ga0173480_111029502	3300015200	Soil	RVLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL*
Ga0132258_110523922	3300015371	Arabidopsis Rhizosphere	VLPALRDSRGKPAAPLRLLAALVVLGMVAIAAPAIVPVLRWVSGTFF*
Ga0180121_100047103	3300017695	Polar Desert Sand	MLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL
Ga0180121_101444472	3300017695	Polar Desert Sand	MLPALRDKRGKPAAPLRVLAVLVVLGLLLIAAPVLVPLVSWAADVLL
Ga0183260_104506491	3300017787	Polar Desert Sand	VLPALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVAALS
Ga0136617_100298152	3300017789	Polar Desert Sand	VLPALRDPRGRPAAPLRLLAFLVVVGMLMLAAPALLPVIRWVVGLF
Ga0136617_100383694	3300017789	Polar Desert Sand	MLPALRDARGKPAAPLRLLAVLVVVGMLVLAAPVLVALLRWGADVFR
Ga0136617_113754011	3300017789	Polar Desert Sand	VLPALRDARGRPAAPLRLLAALIALGMLMLAAPALLPVVRWVLDLL
Ga0190266_100081922	3300017965	Soil	VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL
Ga0190266_101224422	3300017965	Soil	MLPALRDQRGKPAAPLRLLALLVVVGMLVLTAPVLVPMLRWATDLVR
Ga0190265_108416932	3300018422	Soil	MLPALRDQRGKPAAPMRLLAVLVVLGMLVLAAPVLVPMLRWATDFFL
Ga0190272_102368822	3300018429	Soil	MLPALRDQRGKPAAPLRLLAVLVVVGMLVLSAPVLVPMVRWATDLLR
Ga0190272_106850222	3300018429	Soil	MDVLPALRDQRGKPAGPLRLLAVLVLVGMLMIAAPVLVPVLRWASSLL
Ga0190272_107534332	3300018429	Soil	MLPALRDHRGKPAAPLRLLAVLVVVGMLVLTAPVLIPMLRWATDLVR
Ga0190272_115745531	3300018429	Soil	VKTLDRRGKPAAPLRLLAVLVLVGMLTIAAPVLVPMLRWASSLF
Ga0190272_118697672	3300018429	Soil	MLPALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLRWATDLVR
Ga0190272_119877102	3300018429	Soil	MLPALRDARGKPAAPLRLLAVLVVLGMLVIAAPVLVPVLRWASDLFL
Ga0190275_103257002	3300018432	Soil	MLPALRDQRGKPAAPLRLLAVLVVVGMLVLTAPVLIPMLRWATDLVR
Ga0190275_104118022	3300018432	Soil	MLPALRDQRGKPAAPLRLLAVLVVLGMLVLTAPVLVPMLKWATDLVR
Ga0190275_127882391	3300018432	Soil	MDVLPALRDHRGKPAGPLRLLAVLVVVGMLMIAAPVLIPVLRWASSLL
Ga0190268_101985042	3300018466	Soil	VLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL
Ga0190268_121287902	3300018466	Soil	VWRPRHSLGGVLPALRDNRGKPSAPLRVLAALVVLGLLTLAAPVLVPLLRWATDALL
Ga0190270_102905382	3300018469	Soil	VLPALRDHRGKPAGPVRLFAALVLLGMLTLAAPVIVPLLRWASGVLL
Ga0190270_104993702	3300018469	Soil	MLPALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLKWATDLVR
Ga0190274_102520853	3300018476	Soil	VLPALRDHRGKPSASLRLVAALVVLGMLTLAAPVLVPLLRW
Ga0190274_116413892	3300018476	Soil	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL
Ga0190271_102985082	3300018481	Soil	VLPALRDHRGKPAGPVRLLAALVLLGMLALAAPVIVPLLRWASGVLL
Ga0190271_127246292	3300018481	Soil	VLPALRDHRGKPSAALRLVAALVALGLLTLAAPVLVPLLRWASEALL
Ga0066669_113915202	3300018482	Grasslands Soil	VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATALL
Ga0193598_10480122	3300018910	Soil	VLPALRDSRGKPAAPLRIVALLVALGLLALAAPAIVPVVRWLLTAVF
Ga0190273_101060322	3300018920	Soil	MLPALRDRRGKPAAPMRLLAVLVVLGMLLIAAPVLVPVLRWAGKLFL
Ga0190264_100133244	3300019377	Soil	VLPALRDHRGKPAGPLRLVAALVALGLLMLAAPVLVPLLRWASGALL
Ga0190267_101057121	3300019767	Soil	MLPALRDQRGRPAAPMRLLAVLVVLGMLVLAAPVLVPLLRWTMGLF
Ga0190267_101646562	3300019767	Soil	VLPALRDHRGKPSTPLRVLAALVVLGMLTLAAPVLVPLLRWASAALL
Ga0193704_10847592	3300019867	Soil	MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL
Ga0196958_101550252	3300020181	Soil	MLPALRDARGRPAAPLRLLAVLVVVGMLVLAAPVLVPLLRWTTDLLW
Ga0193699_100858701	3300021363	Soil	VLPALRDNRGKPAGPLRLLAVLVVLGMIMLAAPVLVPLVRWASGLI
Ga0247779_11371522	3300022908	Plant Litter	AGPVLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL
Ga0207688_108753052	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL
Ga0207662_108415923	3300025918	Switchgrass Rhizosphere	PSSYARRVLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL
Ga0207691_117274831	3300025940	Miscanthus Rhizosphere	SSYARRVLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL
Ga0207661_104009972	3300025944	Corn Rhizosphere	MLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL
Ga0207679_119454912	3300025945	Corn Rhizosphere	MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATDLL
Ga0207677_118850021	3300026023	Miscanthus Rhizosphere	PALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL
Ga0207698_120965152	3300026142	Corn Rhizosphere	VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWA
Ga0208736_10575162	3300027618	Polar Desert	MLPALRDKRGKPAAPLRVLAVLVLLGMLLIAAPVLVPLLSWAADVLL
Ga0214468_10162622	3300027647	Soil	VLPALRDHTGKPAAPLRLLAALVALGLLMLAAPALIPVVRWAIDLF
Ga0307310_102259592	3300028824	Soil	MLPALRDQRGKPAAPLRLLAVLVVVGMLMLAAPVLVPMVRWTADFLR
Ga0247826_106273762	3300030336	Soil	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVIVPLLRWASGALL
Ga0307502_100868852	3300031164	Soil	MLPALRDQRGKPAAPLRLLAVLVVVGMVLIAAPVLVPIVRWTADFLR
Ga0307408_1014585072	3300031548	Rhizosphere	VLPALRDRRGKPNAPLRLLAVLVAFGMVVLAAPVLIPMLRWLSDLLGL
Ga0307410_111660832	3300031852	Rhizosphere	VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGTLL
Ga0308176_100134273	3300031996	Soil	VLPALRDARGKPAAPLRLLAVLIVLGLVVPVAPLVVDVLRWVAGLLV
Ga0326721_101762862	3300032080	Soil	VVVLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL
Ga0334963_096294_149_292	3300034145	Sub-Biocrust Soil	MLPALRDPGGKPAVPIRLLAVLVVLGMILIAAPILVPVVRWATGTFF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087721

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences