Metagenome / Metatranscriptome Family F087685

Overview

Basic Information

• Family ID: F087685
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 49 residues
• Representative Sequence: VFETKAKVVYCDPRFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRPVS
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 42.86 %
• % of genes near scaffold ends (potentially truncated): 3.64 %
• % of genes from short scaffolds (< 2000 bps): 5.45 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (94.545 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.091 % of family members)
• Environment Ontology (ENVO): Unclassified (35.455 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (52.727 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.67%
  β-sheet: 17.33%
  Coil/Unstructured: 60.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07238	PilZ	5.45
PF02627	CMD	4.55
PF00106	adh_short	3.64
PF08241	Methyltransf_11	3.64
PF07690	MFS_1	3.64
PF00005	ABC_tran	2.73
PF00072	Response_reg	1.82
PF00903	Glyoxalase	1.82
PF13414	TPR_11	1.82
PF00654	Voltage_CLC	0.91
PF00226	DnaJ	0.91
PF01904	DUF72	0.91
PF05491	RuvB_C	0.91
PF00990	GGDEF	0.91
PF13450	NAD_binding_8	0.91
PF01872	RibD_C	0.91
PF02518	HATPase_c	0.91
PF12704	MacB_PCD	0.91
PF01988	VIT1	0.91
PF12844	HTH_19	0.91
PF16657	Malt_amylase_C	0.91
PF01740	STAS	0.91
PF01431	Peptidase_M13	0.91
PF01828	Peptidase_A4	0.91
PF13565	HTH_32	0.91
PF13624	SurA_N_3	0.91
PF01156	IU_nuc_hydro	0.91
PF13545	HTH_Crp_2	0.91
PF00174	Oxidored_molyb	0.91
PF07786	HGSNAT_cat	0.91
PF09278	MerR-DNA-bind	0.91
PF00293	NUDIX	0.91
PF06841	Phage_T4_gp19	0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	4.55
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	4.55
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.91
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.91
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.91
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.91
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.91
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.91
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	0.91
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.91
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.91
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	0.91
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.91
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.91

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
All Organisms	root	All Organisms	5.45 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
cellular organisms	root	All Organisms → cellular organisms	5.45 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.45 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.45 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.73 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005434|Ga0070709_10352385	Not Available	1088
3300012203|Ga0137399_10335931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1253
3300017995|Ga0187816_10218203	All Organisms → cellular organisms → Bacteria → Acidobacteria	830
3300021478|Ga0210402_10209851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1791
3300022512|Ga0242676_1002197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345
3300024330|Ga0137417_1473611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2851
3300024330|Ga0137417_1495855	All Organisms → cellular organisms → Bacteria → Acidobacteria	1855

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.36%
Aquatic	Environmental → Aquatic	22.73%
Plants	Host-Associated → Plants	0.91%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.36%
Freshwater	Environmental → Aquatic → Freshwater	19.09%
Sediment	Environmental → Aquatic → Sediment	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.09%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	13.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.18%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	13.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1006580471	3300004091	Bog Forest Soil	NPFPEETVVQLRILRDDGVFESKARVVYADRRFGMGLAFVEMAPKQRSVLEGWLAELVSRLNAAS*
Ga0062387_1013874612	3300004091	Bog Forest Soil	ILRDQGVFETKAEVVYCDPRFGMGLAFTEMTPDQRSLLEAWLAEIVIQLRPVS*
Ga0062389_1010746941	3300004092	Bog Forest Soil	VYCDPKFGMGLAFSEMTPAHRSVLEAWLVELVIQLHPTS*
Ga0062386_1005566831	3300004152	Bog Forest Soil	GVFETKAKVVYCDPRFGMGLAFTETSPDQRSLLETWLAEIVSQLRPVS*
Ga0066690_100820041	3300005177	Soil	ILRDQGVFQTKAKVVYCDPRFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRPIS*
Ga0070709_103523852	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLVQLRIRRDSGVFETNAKVVYAQGRFGMGLAFTDMTSDRRAILEGWLAELVMQLRPTS*
Ga0066682_100711433	3300005450	Soil	ILRDQGVFETKAKVVYCDPRFGMGLAFTEMTPDQRSLLEAWLGEIVSQLRPIS*
Ga0066691_103739091	3300005586	Soil	VYCDPRFGMGLAFSEMTPNQRSLLEAWLAEIVSQLRPIS*
Ga0070762_102062871	3300005602	Soil	EGALVALRILRDQGVFETKAKVVYCHSNFGMGLAFVDMTPDHRALLENWLAEIVSQLTQVS*
Ga0070762_106492392	3300005602	Soil	NPLPEGTLVDVRILRDQGIFETKAKVVYSDPGFGMGLAFTEISADMRSLLEGWLVEIVSQLRPVS*
Ga0070763_105614361	3300005610	Soil	VFETRARVVYCDPGFGMGLAFTDMTPDQRSLLEAWLTEIVSQLRPVS*
Ga0070763_108284392	3300005610	Soil	DPNFGMGLAFTEIPPDQRSLLEAWLVEIVSQLRPVS*
Ga0070764_105825692	3300005712	Soil	SNFGMGLAFVDMTPDHRSLLENWLAEIVSQLTQAS*
Ga0070764_106894031	3300005712	Soil	ILRDQGIFETKARVVYCDSAFGMGLAFTDMTPDQRSLLETWLTEIVSQLRP*
Ga0070766_104497263	3300005921	Soil	LRILRDQGVFETKAKVVYCDPRFGMGLAFTETTPDQRSILETWLAEIVSQLRTVS*
Ga0075029_1005279352	3300006052	Watersheds	LRILRDQGVFETQAKVVYCDTRFGMGLAFTEMTPDQRSVLETWLVEIVSQLKPVS*
Ga0075029_1008933391	3300006052	Watersheds	NAKVVYCDLRFGMGLAFTEMTPDQRSILENWLAEIVGQLRPVP*
Ga0075018_107290782	3300006172	Watersheds	FPEGTLVGLRILRDQGVFETKAKVVYCDPGFGMGLAFTEMTPDQRSLLEAWIAEIVSQLRSVP*
Ga0075014_1008569852	3300006174	Watersheds	YCDPRFGMGLAFTEMKPDQRSLLETWLVEIVSQLKTVS*
Ga0070765_1019410541	3300006176	Soil	VVYCDPRFGMGLTFTEMTPDQRSLLETWLAEIVSRLRD*
Ga0066658_102524853	3300006794	Soil	VFETKAKVVYFHANFGMGLAFTDMIPSQRSVLEDWLAELVTQSR*
Ga0066660_107061182	3300006800	Soil	FETNAKVVYAHTNFGMGLAFTDMIPDQRSLLENWLAELVTQSRQAS*
Ga0079221_113564691	3300006804	Agricultural Soil	RIVRDQGVFETKAKVVYAQGNFGMGLAFTDMARKQRLVLEDWLAEIVIQSRPSA*
Ga0099830_108802981	3300009088	Vadose Zone Soil	VVYCDARFGMGLAFTDMTPDQRSLLEAWLTEIVSQLRPVS*
Ga0105247_100968681	3300009101	Switchgrass Rhizosphere	QGTLVHLRIIRDQGVFETNAKVAYCDLKFGMGIAFTETTSEQRSILQEWLAEIVVQLKPVS*
Ga0134088_104987852	3300010304	Grasslands Soil	APAKVVYCDPRFGMGLAFTEMTPSQRSLLEAWLAEIVSQLRPIS*
Ga0126361_108890102	3300010876	Boreal Forest Soil	VGLKILRDQGVFETKAKVVYCDPTFGMGLAFTDMTREQRSLLEAWLTEIVSQLRPVS*
Ga0150983_118015351	3300011120	Forest Soil	YSDPGFGMGLAFTEISADMRSLLEGWLVEIVSQLRPVS*
Ga0137392_111821221	3300011269	Vadose Zone Soil	MVGLRILRDLGVFETKARVVYCDPRFGMGLAFTEMTPDQRSQLEAWLGEIVCQLRPIS*
Ga0137382_110808261	3300012200	Vadose Zone Soil	LNPFPEGTLVGLRILREQGVFETKAKVAYCDPRFWMGLEFTEMAPDQRSLLETWLGEIVSQLRPIS*
Ga0137399_103359311	3300012203	Vadose Zone Soil	RDQGVFEAKAKVVYCDPRFGMGLAFTEMTPDQRSILEAWLAEIVSQHRPVS*
Ga0137396_100259256	3300012918	Vadose Zone Soil	GVLETKAKVVYCDPRFGMGLAFTDMTPDQRSLLEAWLAEIVSQLRPVS*
Ga0137410_119461282	3300012944	Vadose Zone Soil	VFETKAKVVYCDPNFGMGIAFTDMAPAQRSLLEAWLTEIVSQLRPVS*
Ga0181521_104637031	3300014158	Bog	FPEGTLVQLRLLRDNGVFETKAKVVYSHSGFGMGVAFIEITPFQLSILESWLAELVIQLRLAP*
Ga0181530_100532281	3300014159	Bog	GVFETKAKVVYSHSGFGMGVAFIEITPFQLSILESWLAELVIQLRLAP*
Ga0182024_100049721	3300014501	Permafrost	VFEAKAKVVYCHPRFGMGLAFTEMAPDQRSLLETWLAEIVMELRQIS*
Ga0137420_10585961	3300015054	Vadose Zone Soil	QGVLETKAKVVYCDPRFGMGLAFTDMTPDQRSLLEAWLAEIVSQLRPVS*
Ga0137420_13619912	3300015054	Vadose Zone Soil	KVVYCDPRFGMGLAFTEMTPNQRSLLEAWLAEIVGQLRPIS*
Ga0137420_13619931	3300015054	Vadose Zone Soil	AGTLVGLRILRDQGVFETKAKKVVYCDPRFGMGLAFTEMTPNQRSLLEAWLAEIVGQLRPIS*
Ga0187818_100650351	3300017823	Freshwater Sediment	QGVFQSKAKVVYTHSNFGMGLAFTDTTPEQRTLLEGWIAEVVSQLKPVS
Ga0187820_10233562	3300017924	Freshwater Sediment	ELRILRDQGVFETKAKIVYSDPGFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRPVS
Ga0187806_11347532	3300017928	Freshwater Sediment	GVFETKAKIVYSDPGFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRPVS
Ga0187825_102549453	3300017930	Freshwater Sediment	KAKVVYCDPGFGMGLAFTDMTRDHRLLLEAWLTEIVSQLRPVS
Ga0187825_102962071	3300017930	Freshwater Sediment	TVVGLRILRDQGVFETKAKVVYCDPKFGMGLAFTEMPPEQRSLLEAWLAEIVSELRTVL
Ga0187801_101380482	3300017933	Freshwater Sediment	GLRILRDQGVFEAKAKIVYSHPGFGMGLAFTEMTPDQRSLLEAWLVEIVSQLKSDS
Ga0187809_102364811	3300017937	Freshwater Sediment	ETKARVVYSDPGFGMGLAFTEMSGDMKSLLEVWLVEIVSQLKSDS
Ga0187819_102135081	3300017943	Freshwater Sediment	LRDQGVFEAKGKVVYCHPSSGMGVAFTEMARDQRLLLEDWLAEIVSQLKPVS
Ga0187819_103932181	3300017943	Freshwater Sediment	ALNPFSEGTVVGLRILRDQGVFETKAKVVYCDPKFGMGLAFAEMTPEQRSLLEAWLAEIVSQLRTVL
Ga0187817_101276873	3300017955	Freshwater Sediment	QGVFETNAKVVYCDPRFGMGLAFTEMTADQRSLLEDWLVEIVSQLRPVS
Ga0187776_113704121	3300017966	Tropical Peatland	FLRDRGVFETKAKVVYCDPKFGMGLAFTEMTPEQRSLLEAWLAEIVSELRAVL
Ga0187783_113423051	3300017970	Tropical Peatland	FPKDTLVQLRILRDQGIFETKGKVVYCDPKFGMGIAFSEMAPEHRSILENWLVELVTQLKPAL
Ga0187816_102031761	3300017995	Freshwater Sediment	QGTFETKAKVVYSDPGFGMGLAFTEMSPDMRLLLEGWLFEIVRQLKPVS
Ga0187816_102182031	3300017995	Freshwater Sediment	FETSAKVVYTDRGCGMGLAFIEMPPSQRSLLESWLAELVFHLRSAS
Ga0187805_102425211	3300018007	Freshwater Sediment	KVVYCDQRFGMGLAFTEMTTEQRSLLESWLAEIVSQLRPVP
Ga0187810_102870342	3300018012	Freshwater Sediment	VYCDPKFGMGLAFTEMTPEQRSLLEAWLAEIVSELRTVL
Ga0187810_105034631	3300018012	Freshwater Sediment	LPEGTVVGLRISRDQGVFETKAKVVYCDPSFGMGLAFTEMLPDQRSLLENWLAEIVIELRKIS
Ga0210407_100004824	3300020579	Soil	MVTLRILRDQGVFETQARVVYSDPGFGMGLAFTEMAPNQRAMLEAWLAEIVSQLRLVS
Ga0210403_113852011	3300020580	Soil	GALVGLRILRDQGVFEAKAKVVYCHPRFGMGLAFTEMIPEQRSRLEAWLAEIVSQLRSVS
Ga0210399_110669252	3300020581	Soil	ETKAKVVYCDPRFGMGLAFTDVTPDQRSLLEAWLAEIVSQPRSVS
Ga0210399_112395222	3300020581	Soil	DPSFGMGLAFTETPPNQRSLLEAWLIEIVSQLRPVS
Ga0210395_102931931	3300020582	Soil	TKAKVVYCHSNFGMGLAFVDMTPDHRALLENWLAEIVSQLTQVS
Ga0210404_101360191	3300021088	Soil	LVGLRILRDQGVFETKAKVVYCDPRFGMGLAFTEMSPDQRSLLEAWLTEIVSQLRPVS
Ga0210396_106971563	3300021180	Soil	HPTFGMGLAFTEMTSAQRSLLEEWLTEIVSQLRPVL
Ga0210388_102959101	3300021181	Soil	CHPNFGMGLAFVDMTPDHRSLLENWLAEIVSQLTQVS
Ga0213877_102912012	3300021372	Bulk Soil	RILRDQGVFETEAKVVYCNPRFGMGLAFARIRPEQRSLLEEWLTELVTQLKEIS
Ga0210387_103460673	3300021405	Soil	ETKAKVAYCDSRFGMGLAFIEMTPDQRSLLEAWLAEIVSQLKSAS
Ga0210386_111133381	3300021406	Soil	DALNPFPEGALVGLRILRDQGVFQTKAKVVYCDSRFGMGLAFIELTPDQRSILENWLAEIVTQLSQVS
Ga0210383_110887222	3300021407	Soil	LVGLRILRDQGVFETKARVVYCDPNFGMGLAFTEIPPDQRSLLEAWLVEIVSQLRPVS
Ga0210394_100637561	3300021420	Soil	RDQGVFETKAKVVYCDPRFGMGLAFTEMAPDQRSLLEAWLTEIVSQLRPVS
Ga0210394_102453512	3300021420	Soil	LRILRDQGVFETKAKVVYCDPRFGMGLAFTEMAPDQRSLLEAWLAEIVIQLRPVP
Ga0210394_115314111	3300021420	Soil	KVVYCDPTFGMGLAIKEMMPDQRSLLEAWLVEIVSQLRSVS
Ga0210394_116687431	3300021420	Soil	VGTLVGLRIVRDQGVFESQAKVVYSDAGFGMGLAFTEMTPDQRSLLETWLAEIVSQLRPV
Ga0210384_104521003	3300021432	Soil	RARVVYSDPGFGMGLAFTEMAPNQRAMLEAWLAEIVSQLRLVS
Ga0210391_107006501	3300021433	Soil	CDPTFGMGLAFTDMTPDQRSLLETWLTEIVSQLRPVS
Ga0210390_112211551	3300021474	Soil	ADAMVTLRILRDQGVFETQARVVYSDPGFGMGLAFTEMAPNQRAMLEAWLAEIVSQLRLV
Ga0210402_102098511	3300021478	Soil	AYCDAGFGMGLAFTDMTPDQRSVLETWLTEIVSQLRTVS
Ga0210402_104733681	3300021478	Soil	DCDAGFGMGLAFTDMTPDQRSVLETWLTEIVSQLRTVS
Ga0210402_106568371	3300021478	Soil	DSRFGMGLAFIEITPDQRSVLENWLAEIVSQLSQVS
Ga0210410_100819576	3300021479	Soil	RVVYSDPGFGMGLAFTEMAPNQRAMLEAWLAEIVSQLRLVS
Ga0210410_101307811	3300021479	Soil	GLRILRDHGVFETKAKVVYSDTGFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRLVGSPH
Ga0210409_113312281	3300021559	Soil	DQGVFQTKAKVVYCDSRFGMGLAFIELTPDQRSILENWLAEIVTQLSQVS
Ga0222728_11145592	3300022508	Soil	YSDPGFGMGLAFTEMTPNQRAVLEAWLAEIVSQLRLVS
Ga0242676_10021971	3300022512	Soil	RDCGVFETKAKVAYCDAGFGMGLAFTDMTPDQRSVLETWLTEIVSQLRTVS
Ga0242660_11110391	3300022531	Soil	YSDVRFGMGLAFTEMTGDQRSLLESWLAELVTKLRPTS
Ga0242654_100985771	3300022726	Soil	EAKVVYCDPSFGMGLAFTETPANQRSLLEAWLIEIVSQLRPVS
Ga0137417_14736113	3300024330	Vadose Zone Soil	LRILRDQGVFETKAKVVYCDARFGMGLAFTDMTPDQRSLLEAWLTEIVSQLRPVS
Ga0137417_14958554	3300024330	Vadose Zone Soil	LRILRDNGVFETKAKVVYSDRKFGMGLAFTEMAPHQRALLEVWLAELVTQLMPTS
Ga0257155_10154461	3300026481	Soil	PFPEGTVVGLRILRDQGVFESKAKVVYCDPNFGMGLAFTEMTPDQRSVLEAWLTEIVSQLRPVS
Ga0179593_10564931	3300026555	Vadose Zone Soil	LRILRDQGVFETKAKVVYCDARFGMGLAFTDMKPDQRSLLEAWLTEIVSQLRPVS
Ga0207815_10164381	3300027014	Tropical Forest Soil	KVVYCDPRFGMGLAFAGTRPEQRSLLEAWLTELVTQLKEIL
Ga0208365_10590371	3300027070	Forest Soil	FPEGTLVGLRILRDQGVFETKAKVVYCDPRFGMGLAFTEMAPDQRSLLEAWLAEIVIQLRPVP
Ga0209525_10540261	3300027575	Forest Soil	VVYCHPNFGMGLAFVDMTPDHRSLLENWLAEIVSQLTQVS
Ga0209388_10422751	3300027655	Vadose Zone Soil	VFETKAKVVYSDRKFGMGIAFTEMAPHQRALLEVWLAELVTQLMPTS
Ga0209275_101715182	3300027884	Soil	KAKVVYCHSNFGMGLAFVDMTPDHRALLENWLAEIVSQLTQVS
Ga0265460_127156823	3300030740	Soil	VVYSDTRFGMGLAFTEMTAEQRLLLENWLAELVTQLVKQHGPTS
Ga0073994_100765722	3300030991	Soil	AKVVYCDARFGMGLAFTDMTPDQRSLLEAWLTEIVSQLRPVS
Ga0170834_1035184742	3300031057	Forest Soil	VQLRIFRGQGVFETKAKVVYSHNAQLNSGMGLAFQKMAPNQRSLLEDWLAEIITRLKTHV
Ga0307476_106679571	3300031715	Hardwood Forest Soil	RDQGVFETQARVAYSDPGFGMGLAFTEMTPNQRAMLEAWLAEIVSQLRLVS
Ga0307476_114344682	3300031715	Hardwood Forest Soil	KVVYGDSGFGMGLAFTEMTPDQRLVLEAWLVEIVSQLKSVL
Ga0307475_101640893	3300031754	Hardwood Forest Soil	VFETKAKVVYCDPRFGMGLAFTEMTPDQRSLLEAWLAEIVSQLRPVS
Ga0307475_109676672	3300031754	Hardwood Forest Soil	DQGIFETKAKVVYCDPRFGMGLAFNEMTLDQRSLLEAWLAEIVSLRRD
Ga0318533_110620352	3300032059	Soil	PRFGMGLAFAGTRPEQRLLLEAWLTELVTQLREIL
Ga0311301_102147521	3300032160	Peatlands Soil	DPRFGMGLAFTEMIPDQRSLLEAWLAEIVTQLKHVL
Ga0335074_104403173	3300032895	Soil	RDQGVFEAKGRVAYTHPSFGMGLAFTEMSQDHRLLLEDWLAEVVTQLKPVS
Ga0335074_115107961	3300032895	Soil	AIVELKIMRDQGVFEAKARVVYTHASFGMGLAFTEMSPDHRLLLEDWLAEIVTQLKPVS
Ga0335075_100582551	3300032896	Soil	RILRDQGTFEAKGKVAYCDSTMGMGLEFTEIAPTQRTLLEDWLAEIVTQLKSA
Ga0335072_102216851	3300032898	Soil	AKGRVAYTHPSFGMGLAFTEMSQDHRLLLEDWLAEVVTQLKPVS
Ga0335072_106905641	3300032898	Soil	FEAKGRVVYTQASFGMGLAFTEMSQDHRLILEDWLAEVVTQLKPVS
Ga0335073_107948441	3300033134	Soil	KARVVYTHASFGMGLAFTEMSPDHRLLLEDWLAEIVTQLKPVS
Ga0335073_120150901	3300033134	Soil	QGIFETTAKVVYCNPGFGMGLAFVELNFEQRSLLEGWIAEIVYQLRSVS