Metagenome / Metatranscriptome Family F087681

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087681
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNIRFSNPDTMQKPPGYS
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.27 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.636 % of family members)
Environment Ontology (ENVO)	Unclassified (28.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 3.12% β-sheet: 0.00% Coil/Unstructured: 96.87%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03401	TctC	8.18
PF04392	ABC_sub_bind	6.36
PF13417	GST_N_3	1.82
PF02668	TauD	1.82
PF08840	BAAT_C	0.91
PF02866	Ldh_1_C	0.91
PF00296	Bac_luciferase	0.91
PF07969	Amidohydro_3	0.91
PF05724	TPMT	0.91
PF00005	ABC_tran	0.91
PF00069	Pkinase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	8.18
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.36
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.82
COG0039	Malate/lactate dehydrogenase	Energy production and conversion [C]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.55 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.73 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.82 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	1.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.91 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.91 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	1.82 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.91 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.91 %
Bacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobium/Pelodictyon group	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group	1.82 %
Variovorax sp. RA8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	0.91 %
Bacillus cereus group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group	0.91 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium	1.82 %
Bacillus thuringiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	0.91 %
Variovorax sp. RA8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	0.91 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
unclassified Chlorobium	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium → unclassified Chlorobium	1.82 %
Bacillus thuringiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	0.91 %
Variovorax sp. RA8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	0.91 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.18 %
Chlorobium sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium → unclassified Chlorobium → Chlorobium sp.	1.82 %
Bacillus thuringiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	0.91 %
Variovorax sp. RA8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	0.91 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10046452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300000956\|JGI10216J12902_121878705	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300002077\|JGI24744J21845_10031544	Not Available	1013	Open in IMG/M
3300004479\|Ga0062595_101010044	Not Available	716	Open in IMG/M
3300005332\|Ga0066388_106369213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300005332\|Ga0066388_107346410	Not Available	553	Open in IMG/M
3300005337\|Ga0070682_101169185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	648	Open in IMG/M
3300005356\|Ga0070674_100204632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1526	Open in IMG/M
3300005356\|Ga0070674_100992004	Not Available	737	Open in IMG/M
3300005436\|Ga0070713_100946369	Not Available	830	Open in IMG/M
3300005438\|Ga0070701_10047471	All Organisms → cellular organisms → Bacteria → Proteobacteria	2211	Open in IMG/M
3300005456\|Ga0070678_100038897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3352	Open in IMG/M
3300005459\|Ga0068867_100011760	All Organisms → cellular organisms → Bacteria	6181	Open in IMG/M
3300005471\|Ga0070698_100483398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1175	Open in IMG/M
3300005548\|Ga0070665_102375657	Not Available	533	Open in IMG/M
3300005578\|Ga0068854_100524938	Not Available	1001	Open in IMG/M
3300005586\|Ga0066691_10573704	Not Available	672	Open in IMG/M
3300005713\|Ga0066905_100425747	Not Available	1084	Open in IMG/M
3300005713\|Ga0066905_100933764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300005718\|Ga0068866_10433372	Not Available	855	Open in IMG/M
3300005764\|Ga0066903_101961807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1123	Open in IMG/M
3300005764\|Ga0066903_106860168	Not Available	591	Open in IMG/M
3300005764\|Ga0066903_108918088	Not Available	508	Open in IMG/M
3300006038\|Ga0075365_10850876	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium → unclassified Chlorobium → Chlorobium sp.	643	Open in IMG/M
3300006038\|Ga0075365_11244072	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium → unclassified Chlorobium → Chlorobium sp.	523	Open in IMG/M
3300006172\|Ga0075018_10775915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	524	Open in IMG/M
3300006172\|Ga0075018_10823139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	511	Open in IMG/M
3300006603\|Ga0074064_10786982	Not Available	539	Open in IMG/M
3300007788\|Ga0099795_10384418	Not Available	634	Open in IMG/M
3300009098\|Ga0105245_10091479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2800	Open in IMG/M
3300009100\|Ga0075418_12950100	Not Available	519	Open in IMG/M
3300010046\|Ga0126384_10431123	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300010047\|Ga0126382_10715069	Not Available	842	Open in IMG/M
3300010358\|Ga0126370_11251217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300010366\|Ga0126379_10375320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1461	Open in IMG/M
3300010366\|Ga0126379_10607300	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300010375\|Ga0105239_10184391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2335	Open in IMG/M
3300010397\|Ga0134124_10951372	Not Available	868	Open in IMG/M
3300010401\|Ga0134121_10395722	Not Available	1247	Open in IMG/M
3300012199\|Ga0137383_11331965	Not Available	511	Open in IMG/M
3300012356\|Ga0137371_11311763	Not Available	535	Open in IMG/M
3300012892\|Ga0157294_10037874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300012911\|Ga0157301_10299340	Not Available	586	Open in IMG/M
3300012912\|Ga0157306_10120427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300012944\|Ga0137410_11739020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300012958\|Ga0164299_10093046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1546	Open in IMG/M
3300012960\|Ga0164301_11667452	Not Available	531	Open in IMG/M
3300012989\|Ga0164305_10564850	Not Available	908	Open in IMG/M
3300012989\|Ga0164305_11268167	Not Available	642	Open in IMG/M
3300013297\|Ga0157378_11472006	Not Available	725	Open in IMG/M
3300014325\|Ga0163163_11949065	Not Available	647	Open in IMG/M
3300014326\|Ga0157380_11105454	Not Available	832	Open in IMG/M
3300014969\|Ga0157376_12205894	Not Available	590	Open in IMG/M
3300015264\|Ga0137403_10999408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300015371\|Ga0132258_10583721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2804	Open in IMG/M
3300015373\|Ga0132257_100268826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2040	Open in IMG/M
3300016270\|Ga0182036_10878247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300016294\|Ga0182041_12053513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	533	Open in IMG/M
3300016319\|Ga0182033_11132752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300016387\|Ga0182040_10515335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	957	Open in IMG/M
3300016404\|Ga0182037_10434371	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1089	Open in IMG/M
3300016422\|Ga0182039_10167384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1721	Open in IMG/M
3300017997\|Ga0184610_1164650	Not Available	732	Open in IMG/M
3300018028\|Ga0184608_10147929	Not Available	1011	Open in IMG/M
3300018083\|Ga0184628_10333316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300019881\|Ga0193707_1168227	Not Available	594	Open in IMG/M
3300020000\|Ga0193692_1120969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	530	Open in IMG/M
3300020001\|Ga0193731_1178597	Not Available	504	Open in IMG/M
3300021086\|Ga0179596_10384376	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
3300021405\|Ga0210387_11368967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	610	Open in IMG/M
3300021439\|Ga0213879_10272412	Not Available	515	Open in IMG/M
3300021560\|Ga0126371_12313128	Not Available	649	Open in IMG/M
3300025912\|Ga0207707_11600539	Not Available	513	Open in IMG/M
3300025928\|Ga0207700_10445080	Not Available	1141	Open in IMG/M
3300025937\|Ga0207669_10762208	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300025981\|Ga0207640_10075087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2290	Open in IMG/M
3300025986\|Ga0207658_10416468	Not Available	1184	Open in IMG/M
3300026067\|Ga0207678_11068036	Not Available	715	Open in IMG/M
3300026095\|Ga0207676_10019512	All Organisms → cellular organisms → Bacteria	4948	Open in IMG/M
3300027560\|Ga0207981_1094418	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300028587\|Ga0247828_10748922	Not Available	614	Open in IMG/M
3300028707\|Ga0307291_1048902	Not Available	1015	Open in IMG/M
3300028708\|Ga0307295_10233057	Not Available	527	Open in IMG/M
3300028711\|Ga0307293_10053246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1259	Open in IMG/M
3300028715\|Ga0307313_10106576	Not Available	853	Open in IMG/M
3300028715\|Ga0307313_10190164	Not Available	636	Open in IMG/M
3300028718\|Ga0307307_10042345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1318	Open in IMG/M
3300028720\|Ga0307317_10327303	Not Available	518	Open in IMG/M
3300028778\|Ga0307288_10436377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	536	Open in IMG/M
3300028782\|Ga0307306_10033228	Not Available	1232	Open in IMG/M
3300028782\|Ga0307306_10047241	Not Available	1064	Open in IMG/M
3300028784\|Ga0307282_10088717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1425	Open in IMG/M
3300028807\|Ga0307305_10252823	Not Available	805	Open in IMG/M
3300028878\|Ga0307278_10483602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	541	Open in IMG/M
3300028885\|Ga0307304_10329966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	679	Open in IMG/M
3300031226\|Ga0307497_10095896	Not Available	1146	Open in IMG/M
3300031366\|Ga0307506_10186568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300031546\|Ga0318538_10592799	Not Available	601	Open in IMG/M
3300031547\|Ga0310887_10274240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300031736\|Ga0318501_10091358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1505	Open in IMG/M
3300031770\|Ga0318521_10810536	Not Available	571	Open in IMG/M
3300031777\|Ga0318543_10332337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300031794\|Ga0318503_10281245	Not Available	540	Open in IMG/M
3300031819\|Ga0318568_10240316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300031890\|Ga0306925_10424842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1422	Open in IMG/M
3300031912\|Ga0306921_12056899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031945\|Ga0310913_10585517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300032051\|Ga0318532_10063825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1277	Open in IMG/M
3300032063\|Ga0318504_10628960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300034147\|Ga0364925_0359473	Not Available	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.18%
Host-Associated	Host-Associated	21.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.64%
Plants	Host-Associated → Plants	21.82%
Aquatic	Environmental → Aquatic	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.18%
Sediment	Environmental → Aquatic → Sediment	4.55%
Roots	Host-Associated → Plants → Roots	2.73%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.91%
Loam	Environmental → Terrestrial → Soil → Loam	11.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100464522	3300000793	Forest Soil	MADTLLSEDSQQFSTHVSRRRVVAGTVTLAVAGATSPALGQSTDRSPNMPDNIRFSNPDTMQKP
JGI10216J12902_1218787051	3300000956	Soil	MANRSFPEDSWQFSTHISRRRVIAGAGTLAVAGANFPAYTQSTDRSPNMPDNIR
JGI24744J21845_100315441	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGP
Ga0062595_1010100442	3300004479	Soil	MADPSSSEDSQLFSNEISRRHVVAGAVTLSIAGAISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGY
Ga0066388_1063692131	3300005332	Tropical Forest Soil	MADTLSSQQFSTHVSRRRVVVGTVALAVAGATSPAFTQPTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLG
Ga0066388_1073464101	3300005332	Tropical Forest Soil	MGDTSSPDHLQQFSTDVSRRRLITGTVTLAVAGAMSPAAAQLTDRSPKMPDNI
Ga0070682_1011691851	3300005337	Corn Rhizosphere	MADTSSSEDSQLFSNEISRRRVVAGAVTLSIVGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQL
Ga0070674_1002046323	3300005356	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDK
Ga0070674_1009920041	3300005356	Miscanthus Rhizosphere	MADTSSSEVPQLFPTEVSRRRVVAGAVTLSIAGTIAPAFAQSTDRSSNMPDNLRFSNPDTMQKPPGYSHVVEVTGP
Ga0070713_1009463691	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYS
Ga0070701_100474711	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGKM
Ga0070678_1000388971	3300005456	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTG
Ga0068867_1000117608	3300005459	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTG
Ga0070698_1004833981	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MADTLSSEDLQQFSTHVSRRRVTPGAVTLTGTISPTFAQSTDRSPNMPDNIRFSNPDTMQKPPGALFEVEAIAVLPPK*
Ga0070665_1023756571	3300005548	Switchgrass Rhizosphere	MADTSSSEDSQLFSTEISRRRVVAGAVTLSIAGTISPALAQSTDRSRSMPDNLRFSNPDTMQKPPGYSH
Ga0068854_1005249382	3300005578	Corn Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQK
Ga0066691_105737042	3300005586	Soil	MADTSSAEESRQFSIAVSRRRFVAGAVRLAVASATSAAFAQSTDGSPNMPDNIRF
Ga0066905_1004257472	3300005713	Tropical Forest Soil	MADTPSSDDLQQFSSDVSRRRLITAAATLAVAGTISPAAAQLTDRSPNMPDNIRFSNPDTMQKPPGQPPGYSH
Ga0066905_1009337642	3300005713	Tropical Forest Soil	MTDTLSSEGSQQFLTHVSRRRVVAGTVTLAVAGATWPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEV
Ga0068866_104333722	3300005718	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEV
Ga0066903_1019618071	3300005764	Tropical Forest Soil	MGDTLSSEDSQQFSTHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIR
Ga0066903_1068601681	3300005764	Tropical Forest Soil	MADALSSEDSQQFSTYVSRRHVVAGAVTLAVAGATSPAFAQSTDRSPSMPDNIRFSN
Ga0066903_1089180881	3300005764	Tropical Forest Soil	MADTLLSEDSQQFSTHVSRRRVVAGTVTLAVAGATSPALGQSTDRSPNMPDNIRFSNPDTMQKPPGYSHV
Ga0075365_108508761	3300006038	Populus Endosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGP
Ga0075365_112440721	3300006038	Populus Endosphere	MADPSSSEDSQLFSTEISRRYVVAGAVTLSIAGTIPPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGP
Ga0075018_107759151	3300006172	Watersheds	MADTLSSEDLQQFSTHVSRRRVAPGAVTLAVAGAISPTFAQSTDRSPNMPDNIRFSN
Ga0075018_108231392	3300006172	Watersheds	MTDTPSSADLTQSFPDVSRRRIVGGAVTLAVAAATSAALPQSIDRSPNMPDNISFSNPDTMQK
Ga0074064_107869821	3300006603	Soil	MADTSSSEDSQLFSTEISRRRVVAGAVTLSIAGTISPALAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVV
Ga0099795_103844181	3300007788	Vadose Zone Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRF
Ga0105245_100914791	3300009098	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPP
Ga0075418_129501001	3300009100	Populus Rhizosphere	MPDEPSSDDLQQFSSGVSRRCLITAAATLAVAGTISPAAAQLPDRSPNMPDNIRFSNPDTMQKPPGQPPGYSHVVE
Ga0126384_104311231	3300010046	Tropical Forest Soil	MADTLSSEESQQFLSHVSRRRVVAGAVTLAVAGATSPAFTQSTDRSPTMPDNIRFSNPDTMQKPPGYSHVVEV
Ga0126382_107150691	3300010047	Tropical Forest Soil	MADTLSSEDLQQFWTHVSHRRVASGAVTLTVAGTISPTFAQSTDRGPKMPDNIRFSNPDTMQKPPGY
Ga0126370_112512171	3300010358	Tropical Forest Soil	MADPSSFERFQQFSADVPRRQVIVAGAITLAFAGATARAFAQASDRRTSMPDNIRFSSPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKS
Ga0126379_103753201	3300010366	Tropical Forest Soil	MTDTLSSEGSQQFLTHVSRRRVVAGTVTLAVAGATWPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGY
Ga0126379_106073004	3300010366	Tropical Forest Soil	MADTLSSEESQQFLSHVSRRRVVAGAVTLAVAGATSPAFTQSTDRSPTMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQ
Ga0105239_101843914	3300010375	Corn Rhizosphere	MADTSSSEDSQLFSTEISRRRVVAGAVTLSIAGTISPALAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGP
Ga0134124_109513722	3300010397	Terrestrial Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNIRFSNPDTMQKPPGYS
Ga0134121_103957222	3300010401	Terrestrial Soil	MADTSSSEDSQLFSTEISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTG
Ga0137383_113319651	3300012199	Vadose Zone Soil	MADPSSTEGSQQFSTHVSRRRVVTGAVTLAVAGASSPAFAQSTDSSLNMPDKIRFSSPRS
Ga0137371_113117631	3300012356	Vadose Zone Soil	MADTSSTEGSQQFSTHVSRRRVVTGAVTLAVAGASSPAFAQSTDRSPNMPDNIRFSNPDTMQKPP
Ga0157294_100378742	3300012892	Soil	MVDASSSEDSQQSSTDLSRRRVVAGAVTLSVAGALSPAFAQPTDRSPDMPDNIRFSNPDTMQKPPGYSHVVEVT
Ga0157301_102993401	3300012911	Soil	MVDASSSEDSQQSSPDLSCRRVVAGAVTLSVAWALSPPFAQPTERSPDVPDNIRFSNPDT
Ga0157306_101204272	3300012912	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGID
Ga0137410_117390202	3300012944	Vadose Zone Soil	MADTLPFQHSQQFSTDVSRRQVAAGVIALGVAGATSPAAAQSNDGSPSMPDNIRFSSPDTLQKPPGYS
Ga0164299_100930461	3300012958	Soil	MADTSSSEDSQLFSNEISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHV
Ga0164301_116674521	3300012960	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHV
Ga0164305_105648502	3300012989	Soil	MADTSSSEDSQLFSNEISRRRVVAGAVTLSIVGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTG
Ga0164305_112681671	3300012989	Soil	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSH
Ga0157378_114720062	3300013297	Miscanthus Rhizosphere	MADPSSSEDSQLFSNEISRRHVVAGAVTLSIAGAIPPAFAQSTDRSPSMPDNLRFS
Ga0163163_119490651	3300014325	Switchgrass Rhizosphere	MADPSSSEDSQLFSNEISRRHVVAGAVTLSIAGAISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRT
Ga0157380_111054541	3300014326	Switchgrass Rhizosphere	MADPSSSEDSQLFSTEISRRHVVAGAVTLSIAGAIPPAFAQSTDRSPSMPDNLRFSNPDTMQKP
Ga0157376_122058941	3300014969	Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPG
Ga0137403_109994081	3300015264	Vadose Zone Soil	MVDTCSSEPFREFSIDVSRRQVVVGGAITLAFAGATSPAFSQSPDRSAKMPDNIRFSSPDTMQKPP
Ga0132258_105837214	3300015371	Arabidopsis Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGY
Ga0132257_1002688261	3300015373	Arabidopsis Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGY
Ga0182036_108782472	3300016270	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKP
Ga0182041_120535131	3300016294	Soil	MADTLSSEDSQQFSTHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGKM
Ga0182033_111327522	3300016319	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRF
Ga0182040_105153351	3300016387	Soil	MADTLSSEDSQQFSAHVSLRRIVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGKMG
Ga0182037_104343713	3300016404	Soil	MADTLSSQQFSTHVSRRRVVAGTAALALAGATSPAFTQSTERSPNMPDNIRFSNPDTM
Ga0182039_101673843	3300016422	Soil	MADTLSSEDSQQFSAHVSLRRIVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGK
Ga0184610_11646502	3300017997	Groundwater Sediment	MADTSFSEDSQQFATDVSRRHVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVTGPGRT
Ga0184608_101479293	3300018028	Groundwater Sediment	MADTSSSEDSQLFSTHISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDT
Ga0184628_103333162	3300018083	Groundwater Sediment	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGKMG
Ga0193707_11682271	3300019881	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVTGPG
Ga0193692_11209691	3300020000	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVTGPGRTVYFAGQL
Ga0193731_11785971	3300020001	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPP
Ga0179596_103843762	3300021086	Vadose Zone Soil	MTDASSFEPAQQSSTEVSRRQVVVAGAITLAVAGGTSPASAQSNNRSPNMPDNIRF
Ga0210387_113689671	3300021405	Soil	MTDTPPSADLTQSFPDVSRRRIVGGAVTLAVAAATSAALPQSIDRSPNMPDNISFSNPDTMQKPPGY
Ga0213879_102724121	3300021439	Bulk Soil	MADTLSSEDSQQFSTHVSRRRVVAGAATLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPVYSHVVEVTGPGRTV
Ga0126371_123131281	3300021560	Tropical Forest Soil	MADALSSEDSQQFSTYVSRRHVVAGAVTLAVAGATSPAFAQSTDRSPSMPDNIRFSNPDTMQKPPGYSHVVEVTGP
Ga0207707_116005391	3300025912	Corn Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRF
Ga0207700_104450801	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKP
Ga0207669_107622081	3300025937	Miscanthus Rhizosphere	MADPSSSEDSQLFSNEISRRHVVAGAVTLSIAGAISPAFAQSTDRSPSMPDNLRFSNPDT
Ga0207640_100750871	3300025981	Corn Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPG
Ga0207658_104164682	3300025986	Switchgrass Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHV
Ga0207678_110680362	3300026067	Corn Rhizosphere	MADPSSSEDSQLFSTEISRRHVVAGAVTLSIAGTIPPAFAQSTDRRPSMPDNLRFS
Ga0207676_100195121	3300026095	Switchgrass Rhizosphere	MADTSSSEDSQLFSTDISRRRVVAGEVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDK
Ga0207981_10944181	3300027560	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGKM
Ga0247828_107489222	3300028587	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKP
Ga0307291_10489022	3300028707	Soil	MADTSFSEDSQKFATDVSRRHVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNI
Ga0307295_102330571	3300028708	Soil	MADTSFSEDSQRFATDVSRRRVVAGTVTLSLAGAISPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTG
Ga0307293_100532461	3300028711	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVT
Ga0307313_101065762	3300028715	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSNPD
Ga0307313_101901642	3300028715	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQK
Ga0307307_100423452	3300028718	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSGND
Ga0307317_103273031	3300028720	Soil	MADTPSSSDDLQQFSSDVSRRRLITAAATLAVAGTISPAAAQLTDRSPNMPDNIRFSNPDTMQ
Ga0307288_104363771	3300028778	Soil	MADTSFSEDSQQFATDVSRRRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGI
Ga0307306_100332282	3300028782	Soil	MADTSFSEDSQQFATDVSRRHVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPGYSHVVEV
Ga0307306_100472411	3300028782	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVV
Ga0307282_100887171	3300028784	Soil	MADTSFSEDSQQFATDVSRTRVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNVRFSNPDTMQKPPGYS
Ga0307305_102528232	3300028807	Soil	MADTSFSEDSQRFATDVSRRRVVAGTVTLSLAGAISPAFAQSTDRSPNMPDNIRFSNPD
Ga0307278_104836021	3300028878	Soil	MADTSFSEDSQRFATDVSRRRVVAGTVTLSLAGAISPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDK
Ga0307304_103299661	3300028885	Soil	MADTSSSEDSQLFSTEISRRRVVAGAVTLSIAGTISPAFAQLTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKS
Ga0307497_100958962	3300031226	Soil	MADTSFSEDSQQFATDVSRRHVVAGAVTLSLAGAISPAFAQSTDRSPNMPDNIRFSSPDTMQKPPG
Ga0307506_101865681	3300031366	Soil	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISSAFAQSTDRSPSMPDNLRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDKSG
Ga0318538_105927991	3300031546	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTG
Ga0310887_102742401	3300031547	Soil	MVDASSSEDSQQSSTDLSRRRVVAGAVTLSVAGALSPAFAQPTDRSPDMPDNIRFSNPDTMQKPPGYSHVVEVTGPGRTVYFAGQLGIDK
Ga0318501_100913582	3300031736	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVE
Ga0318521_108105362	3300031770	Soil	MADTLSSEDSQQFSTHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGY
Ga0318543_103323372	3300031777	Soil	MADTLSSEDSQQFSTHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDYIR
Ga0318503_102812451	3300031794	Soil	MADTLSSEDSQQFSAHVSLRRIVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGY
Ga0318568_102403162	3300031819	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEV
Ga0306925_104248422	3300031890	Soil	MADTLSSEDSQQFSMHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFS
Ga0306921_120568992	3300031912	Soil	MTDTLSSEGSQQFLTHVSRRRVVAGTVTLAVAGATWPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTG
Ga0310913_105855171	3300031945	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSH
Ga0318532_100638252	3300032051	Soil	MADTLSSEDSQQFSAHVSRRRVVAGAVTLAVAGATSPAFAQSTDRSPNMPDNIRFSNPDT
Ga0318504_106289602	3300032063	Soil	MTDTLSSEGSQQFLTHVSRRRVVAGTVTLAVAGATWPAFAQSTDRSPNMPDNIRFSNPDTMQKPPGYSHVVEVTGPGR
Ga0364925_0359473_2_175	3300034147	Sediment	MADTSSSEDSQLFSTDISRRRVVAGAVTLSIAGTISPAFAQSTDRSPSMPDNLRFSNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087681

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences