Metagenome / Metatranscriptome Family F087670

Basic Information
Family ID	F087670
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	79 residues
Representative Sequence	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPAS
Number of Associated Samples	100
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	43.93 %
% of genes near scaffold ends (potentially truncated)	97.27 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Unclassified (53.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01266	DAO	86.36
PF08501	Shikimate_dh_N	2.73
PF01472	PUA	0.91
PF01264	Chorismate_synt	0.91
PF02368	Big_2	0.91
PF13450	NAD_binding_8	0.91
PF02618	YceG	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	2.73
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	0.91
COG1559	Endolytic transglycosylase MltG, terminates peptidoglycan polymerization	Cell wall/membrane/envelope biogenesis [M]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
All Organisms	root	All Organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
cellular organisms	root	All Organisms → cellular organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.55 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.64 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.64 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.82 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	0.91 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.91 %
Alicyclobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_118703431	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300004463\|Ga0063356_102073400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	862	Open in IMG/M
3300005165\|Ga0066869_10138829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300005176\|Ga0066679_10710335	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005345\|Ga0070692_11082875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300005347\|Ga0070668_101660566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300005355\|Ga0070671_100805709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	818	Open in IMG/M
3300005366\|Ga0070659_102105374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300005438\|Ga0070701_11019920	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005439\|Ga0070711_100550421	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005439\|Ga0070711_100717810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	843	Open in IMG/M
3300005439\|Ga0070711_100853362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300005457\|Ga0070662_101758462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300005459\|Ga0068867_102000300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300005468\|Ga0070707_102148621	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005518\|Ga0070699_102104520	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005535\|Ga0070684_101025485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	774	Open in IMG/M
3300005587\|Ga0066654_10066387	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300005616\|Ga0068852_101565228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300005618\|Ga0068864_102724979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300005843\|Ga0068860_102776706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300006034\|Ga0066656_10814016	Not Available	598	Open in IMG/M
3300006173\|Ga0070716_100116824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1663	Open in IMG/M
3300006175\|Ga0070712_101444708	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300006237\|Ga0097621_101245184	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300006603\|Ga0074064_11728202	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300006606\|Ga0074062_12780602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M
3300006755\|Ga0079222_12612250	Not Available	508	Open in IMG/M
3300006806\|Ga0079220_10429560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	875	Open in IMG/M
3300006852\|Ga0075433_11299524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300009101\|Ga0105247_10514763	Not Available	874	Open in IMG/M
3300009174\|Ga0105241_10130179	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300009551\|Ga0105238_12755570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	528	Open in IMG/M
3300010373\|Ga0134128_11384569	Not Available	775	Open in IMG/M
3300010375\|Ga0105239_10498830	Not Available	1384	Open in IMG/M
3300010396\|Ga0134126_10747029	Not Available	1109	Open in IMG/M
3300010396\|Ga0134126_12314897	Not Available	585	Open in IMG/M
3300010400\|Ga0134122_11903349	Not Available	630	Open in IMG/M
3300010880\|Ga0126350_10247828	Not Available	528	Open in IMG/M
3300011119\|Ga0105246_12222469	Not Available	534	Open in IMG/M
3300012498\|Ga0157345_1019986	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300012908\|Ga0157286_10100572	Not Available	848	Open in IMG/M
3300012911\|Ga0157301_10459252	Not Available	507	Open in IMG/M
3300012951\|Ga0164300_10749589	Not Available	598	Open in IMG/M
3300012955\|Ga0164298_11114110	Not Available	592	Open in IMG/M
3300012958\|Ga0164299_11284237	Not Available	559	Open in IMG/M
3300012960\|Ga0164301_10006650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4357	Open in IMG/M
3300012984\|Ga0164309_11136428	Not Available	652	Open in IMG/M
3300012986\|Ga0164304_10381036	Not Available	996	Open in IMG/M
3300012986\|Ga0164304_10665770	Not Available	786	Open in IMG/M
3300012986\|Ga0164304_11560645	Not Available	548	Open in IMG/M
3300012988\|Ga0164306_11446790	Not Available	587	Open in IMG/M
3300012988\|Ga0164306_11884840	Not Available	520	Open in IMG/M
3300013105\|Ga0157369_10859605	Not Available	931	Open in IMG/M
3300013297\|Ga0157378_10182834	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300013306\|Ga0163162_11254324	Not Available	842	Open in IMG/M
3300014325\|Ga0163163_12373621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	589	Open in IMG/M
3300014325\|Ga0163163_13089755	Not Available	519	Open in IMG/M
3300014745\|Ga0157377_10317890	Not Available	1033	Open in IMG/M
3300015242\|Ga0137412_11005282	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300015372\|Ga0132256_103589716	Not Available	522	Open in IMG/M
3300017792\|Ga0163161_10488021	Not Available	1001	Open in IMG/M
3300017993\|Ga0187823_10271934	Not Available	580	Open in IMG/M
3300020069\|Ga0197907_11440154	Not Available	522	Open in IMG/M
3300020081\|Ga0206354_11365483	Not Available	746	Open in IMG/M
3300021445\|Ga0182009_10445086	Not Available	676	Open in IMG/M
3300022883\|Ga0247786_1146654	Not Available	530	Open in IMG/M
3300025898\|Ga0207692_10023600	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300025898\|Ga0207692_11212894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300025901\|Ga0207688_10388395	Not Available	864	Open in IMG/M
3300025915\|Ga0207693_11328548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	537	Open in IMG/M
3300025916\|Ga0207663_10401521	Not Available	1048	Open in IMG/M
3300025916\|Ga0207663_11700695	Not Available	508	Open in IMG/M
3300025920\|Ga0207649_11417120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	550	Open in IMG/M
3300025921\|Ga0207652_10826224	Not Available	822	Open in IMG/M
3300025924\|Ga0207694_10139100	All Organisms → cellular organisms → Bacteria	1951	Open in IMG/M
3300025927\|Ga0207687_10970567	Not Available	728	Open in IMG/M
3300025930\|Ga0207701_11497821	Not Available	547	Open in IMG/M
3300025934\|Ga0207686_10079604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2134	Open in IMG/M
3300025935\|Ga0207709_11608403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	540	Open in IMG/M
3300025936\|Ga0207670_10267409	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300025939\|Ga0207665_10358379	Not Available	1102	Open in IMG/M
3300025939\|Ga0207665_10791776	Not Available	749	Open in IMG/M
3300025944\|Ga0207661_11462527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300025949\|Ga0207667_11783602	Not Available	580	Open in IMG/M
3300025981\|Ga0207640_10043738	All Organisms → cellular organisms → Bacteria	2864	Open in IMG/M
3300026025\|Ga0208778_1016159	Not Available	720	Open in IMG/M
3300026067\|Ga0207678_10627987	Not Available	943	Open in IMG/M
3300028589\|Ga0247818_11350731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	513	Open in IMG/M
3300028718\|Ga0307307_10111750	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300028744\|Ga0307318_10185709	Not Available	718	Open in IMG/M
3300028799\|Ga0307284_10458347	Not Available	522	Open in IMG/M
3300028802\|Ga0307503_10841661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300028803\|Ga0307281_10269181	Not Available	630	Open in IMG/M
3300028812\|Ga0247825_10780139	Not Available	689	Open in IMG/M
3300028828\|Ga0307312_10789866	Not Available	629	Open in IMG/M
3300031366\|Ga0307506_10043468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1272	Open in IMG/M
3300031720\|Ga0307469_11312219	Not Available	688	Open in IMG/M
3300031740\|Ga0307468_100701200	Not Available	846	Open in IMG/M
3300031908\|Ga0310900_11369232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300031938\|Ga0308175_102687303	Not Available	557	Open in IMG/M
3300031996\|Ga0308176_11901227	Not Available	635	Open in IMG/M
3300032009\|Ga0318563_10590374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	599	Open in IMG/M
3300032261\|Ga0306920_104377408	Not Available	507	Open in IMG/M
3300032893\|Ga0335069_12195846	Not Available	578	Open in IMG/M
3300033500\|Ga0326730_1099991	Not Available	540	Open in IMG/M
3300033551\|Ga0247830_10629705	Not Available	850	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.27%
Host-Associated	Host-Associated	32.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.36%
Plants	Host-Associated → Plants	32.73%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.91%
Roots	Host-Associated → Plants → Roots	2.73%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Peat	Environmental → Terrestrial → Peat	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.55%
Loam	Environmental → Terrestrial → Soil → Loam	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.27%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026025	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1187034311	3300002568	Soil	MESVLPLAGAGFVLGWPLEWVIQQFPRDIGTAPSSRRRLIVGLITAVLFAVEAVAIGFTAGLLPALLLTALVVPAAAIDLEHRIIPDLINL
Ga0063356_1020734002	3300004463	Arabidopsis Thaliana Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPALLLTALVVPAAAID
Ga0066869_101388292	3300005165	Soil	MEFVLPFAGAGFALGWPMEWVIQRFPTGEGTAPSARRKWIVAGITAALFAALTLHIGLNPELAPALLLTALVVPAAAIDLKHRIIP
Ga0066679_107103351	3300005176	Soil	MDSPIGSGMELALPFAGVGFALGWPIEWLIQRFPLGQGTPPSRRRWLVVATLTASLFAALTLKIGFEARLAPALLLT
Ga0070660_1014537141	3300005339	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPEGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAP
Ga0070692_110828751	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWVVAAITALLFALEAVSIGIEPELLPALLLTALVVPAAAIDLE
Ga0070668_1016605661	3300005347	Switchgrass Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTAL
Ga0070671_1008057091	3300005355	Switchgrass Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGMHPRLVPALLLTALVVPASVIDLKHRIIPDAINLPGA
Ga0070659_1021053741	3300005366	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGKGSEPSSRRRWIVAGVTAFLFAAVTVQIGFHARLAPALLLTALIVPASVIDLRHRIIPNAIN
Ga0070701_110199202	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWVVAAITALLFALEAVSIGIEPELLPALLLTALVVPAAAIDLEHRII
Ga0070711_1005504212	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MELALPFAGVGFVLGWPIEWLIQRFPLGHGTPPSVRRRWIVAGITAALFAVLTAVIGLHPRLAPALILTALIVPASAIDLNHRIIPDRINLPGALLVFTA
Ga0070711_1007178101	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYP
Ga0070711_1008533621	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPMEWLIQRFPTGEGTAPSARRRWIVAGITAALFAVLTVHIGLQPELAPALLLTALV
Ga0070662_1017584622	3300005457	Corn Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPAS
Ga0068867_1020003001	3300005459	Miscanthus Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEALSIGIVPELLPALLLTALVVPAAAIDLEHRIIPD
Ga0070707_1021486212	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVP
Ga0070699_1021045202	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPMEWLIQRFPTGEGTAPSARRRWIVAGITAALFAVLTVHIGLQPELAPALLLTALVV
Ga0070684_1010254851	3300005535	Corn Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPASVIDLKHRIIPDAIN
Ga0068854_1005115152	3300005578	Corn Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLAPALLLTAL
Ga0066654_100663871	3300005587	Soil	MEFVLPLAGAGFALGWPIEWLIQRFPRGKGSEPSSRRRWIVAGVTAFLFAAVTVQVGFQARLAPALLLTALIVPASVIDLRHRIIP
Ga0068852_1015652281	3300005616	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPEGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPASVIDLRHRIIP
Ga0068864_1027249791	3300005618	Switchgrass Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPKGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIIPASAIDLRHRI
Ga0068860_1027767062	3300005843	Switchgrass Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPAS
Ga0066656_108140162	3300006034	Soil	VPGAADSYGMEFAVPMVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGVEPQLAPALLLTALIVPASVIDI
Ga0070716_1001168241	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MELALPFAGMGFALGWPIEWLIQRFPQGVGTPPSVRRRWLVAALTAALFAALTLKIGFHPRLAPALLLTALIVPASVIDLNHRI
Ga0070712_1014447082	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAVLVFV
Ga0097621_1012451841	3300006237	Miscanthus Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYP
Ga0074064_117282022	3300006603	Soil	METVLPLAGFGFALGWPLEWLVQRFPLGKGTAPSALRRWLLAALMAGLFALEAVQIGFVPELAPALLLTALVVPAATIDIEHRIIPNAINYPGALLL
Ga0074062_127806022	3300006606	Soil	MEFVLPLAGAGFALGWPMEWLIQRFPTGEGTAPSARRRWIVAGITAALFAVLTVHIGLQPELAPALLLTALVVPASAIDLKHRIIPNAINL
Ga0079222_126122502	3300006755	Agricultural Soil	MEFVLPLAGAGFALGWPIEWLIQRFPRGKGSEPSSRRRWIVAGVTAFLFAAVTVQVGFHARLAPALLLTALIVPASVI
Ga0079220_104295601	3300006806	Agricultural Soil	VDVALPLAGLGFALGWPLERLIQRFPLGHGTAPSTRRRWVVAAVTAALFAALTLRIGFQPRLAPALLLTALIVPASAIDIRHRII
Ga0075433_112995241	3300006852	Populus Rhizosphere	MEIALPLAGAGFALGWPMEWVIQRFPTGKGTAPSAHRKWVVAGVTAALFAALAFHIGLHPRLVPALLLTVLVVPA
Ga0105247_105147632	3300009101	Switchgrass Rhizosphere	MEAVLPLAIGFALGWPIEWLVQRFPLGQGTAPSTRRRWVAAGLTAGLFAALALRIGFEAQLVPALVLTALI
Ga0105241_101301793	3300009174	Corn Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWVVAASTALLFALEAVSIGIEPELLPALLLTALVVPAAAID
Ga0105238_127555701	3300009551	Corn Rhizosphere	MELALPLAGVGFALSWPMEWTIQRFPLGKGTRPSVQRRWVIAAVMAALFAALTFTIGLHPRL
Ga0134128_113845692	3300010373	Terrestrial Soil	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPALLLTALVVPAAAIDLEHRIIPD
Ga0105239_104988301	3300010375	Corn Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPALLLTALVVPAAAIDL
Ga0134126_107470291	3300010396	Terrestrial Soil	MEFVLPLAGAGFALGWPIEWLIQRFPKGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAP
Ga0134126_123148971	3300010396	Terrestrial Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALL
Ga0134122_119033492	3300010400	Terrestrial Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLIAGLTAGLFAALTWQIGIEPQLAPALLLTAL
Ga0126350_102478281	3300010880	Boreal Forest Soil	METVLPLAGAGFALGWPIEWLIQRFPKGEGTAPSARRRWYVAAATAALFAVIALRIGLHPRLVPALLLTALIVPAS
Ga0105246_122224692	3300011119	Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIIPASAIDLRHRIIP
Ga0157345_10199861	3300012498	Arabidopsis Rhizosphere	MEFAVPMVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAVLV
Ga0157286_101005722	3300012908	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLASALLLTALIVPASVIDINHRIIPNLINYPGAVLVF
Ga0157301_104592521	3300012911	Soil	MEIALPLAGAGLALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVV
Ga0164300_107495891	3300012951	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRII
Ga0164298_111141102	3300012955	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVID
Ga0164299_112842371	3300012958	Soil	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPARSGDPDGPA
Ga0164301_100066505	3300012960	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPG
Ga0164309_111364282	3300012984	Soil	MELVLPFAGAGFALGWPMEWVIQQFPTGEGTAPSSRRKWVVAGITAALFAVLTFHIGLQPRLAPALLLTALVVPASAIDL
Ga0164304_103810361	3300012986	Soil	MEIALPLAGAGFVLGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPASVID
Ga0164304_106657701	3300012986	Soil	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWVVAAITALLFALEAVSIGIEPELLPHV
Ga0164304_115606451	3300012986	Soil	MEFVLPLAGAGFALGWPIEWLIQRFPKPEGTAPSSRRRRIVAAVTAALFAAVTIKIGFVPRLAPALLLTALIVPASIIDLRHRI
Ga0164306_114467902	3300012988	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLAPALLLTALIVP
Ga0164306_118848402	3300012988	Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPASVIDLKHRI
Ga0164305_112230941	3300012989	Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVP
Ga0157369_108596051	3300013105	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPAL
Ga0157378_101828344	3300013297	Miscanthus Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALI
Ga0163162_112543241	3300013306	Switchgrass Rhizosphere	MEFVLPLAGAGFALGWPMEWLIQRFPTGEGTAPSARRRWIVAGITAALFAVLTVHIGLQPELAPALLLTAL
Ga0163163_123736212	3300014325	Switchgrass Rhizosphere	MEAVLPLAGIGFALGWPIEWLVQRFPLGQGTAPSTRRRWVAAGLTAGLFAALALQIGFEAQLVPALVLTALIVPASLIDLN
Ga0163163_130897551	3300014325	Switchgrass Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWVVAAITALLFALEAVSIGIEPELLP
Ga0157377_103178901	3300014745	Miscanthus Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPALLLTALVVPAAAI
Ga0137412_110052822	3300015242	Vadose Zone Soil	VADSYRMEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLVAGLMAGLFAALTLQIGIEPQLAPALLLTALIVPASVIDI
Ga0132256_1035897161	3300015372	Arabidopsis Rhizosphere	MEFLLPLAGAGFALGWPIEWLIQRFPKGEGTAPSARRRWVVAAATAGLFVAIALRIGLHPQLVPALLLTALIVPASVIDLRLRIIPDA
Ga0163161_104880211	3300017792	Switchgrass Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAV
Ga0187823_102719342	3300017993	Freshwater Sediment	MEFALPVAGVGFALGWPIEWVIQRFPLGKGTMPSVRRRWVVAAVTAALFAAMAVKIGLHPRLVPALLLTALVVPASVIDLNHRIIPDRIN
Ga0197907_114401542	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPASVIDLRHRIIPNAIN
Ga0206354_113654831	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPRGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALL
Ga0182009_104450861	3300021445	Soil	MEIALPLAGAGFALGWPMEWLIQRFPIGKGTAPSSRRKWVVAGVTAALFAALAYHIGLHPRLVPALLLTALVVPASAIDLKHRII
Ga0247786_11466541	3300022883	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAVLVFVVACIA
Ga0207692_100236005	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MEVVLPIAGFGFAMGWPLERLIQRFPRGEGSAPSSRRRWIVAGITAVLFAALAFKIGFHAQLVPALLLTA
Ga0207692_112128942	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MVGFALGWPVEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFGALTWQIGIEPQLAPALLLTALIVP
Ga0207688_103883952	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVV
Ga0207693_113285482	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MEVVLPIAGFGFAMGWPLERLIQRFPRGEGSAPSSRRRWIVAGITAVLFAALAFKIGFHAQLVPALLLTALVVPAAAIDLQHRIIPNAINLPGAVLVY
Ga0207663_104015211	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MELALPFAGVGFVLGWPIEWLIQRFPLGHGTPPSVRRRWIVAGITAALFAVLTAVIGLHPRLAPALILTALIVPASAIDLNHRIIPDRLNLPGAL
Ga0207663_117006952	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLL
Ga0207649_114171201	3300025920	Corn Rhizosphere	MEAVLPLAGIGFALGWPIEWLVQRFPLGQGTAPSTRRRWVAAGLTAGLFAALALRIGFEAQLVPALVLTALIVPASL
Ga0207652_108262242	3300025921	Corn Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGA
Ga0207694_101391003	3300025924	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPEGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPASVIDLRHRIIPNA
Ga0207687_109705672	3300025927	Miscanthus Rhizosphere	MEIALPLAGAGFVLGWPMEWLIQRFPIGKGTAPSSRRKWVVAGVTAALFAALAYHIGLHPRLVPALLLTA
Ga0207701_114978212	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEALSIGIVPELLPALLLTALV
Ga0207686_100796044	3300025934	Miscanthus Rhizosphere	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRI
Ga0207709_116084032	3300025935	Miscanthus Rhizosphere	MEAVLPLAGIGFALGWPIEWLVQRFPLGQGTAPSTRRRWIAAALTAGLFAALALQIGFEAQLVPALVLTA
Ga0207670_102674091	3300025936	Switchgrass Rhizosphere	MVGFALGWPIEWLIQRFPKGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLLTALIVPASVIDL
Ga0207665_103583792	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPKGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFQARLAPALLLTALIVPASVIDLRH
Ga0207665_107917762	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MELALPFAGMGFALGWPIEWLIQRFPQGVGTPPSVRRRWLVAALTAALFAALTLKIGFHPRLAPALLL
Ga0207661_114625272	3300025944	Corn Rhizosphere	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPASVIDLKHRIIPDAINLPG
Ga0207667_117836022	3300025949	Corn Rhizosphere	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEALSIGIVPELLPALLLTAL
Ga0207640_100437381	3300025981	Corn Rhizosphere	MEFVLPLAGAGFALGWPIEWLIQRFPQGEGTAPSSRRRWIVAGVTALLFAAVTVRIGFHARLAPALLL
Ga0208778_10161592	3300026025	Rice Paddy Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSTRRKWVVAGVTAALFAVLAYHIGVHPRLVPALLLTALVVPASV
Ga0207678_106279872	3300026067	Corn Rhizosphere	MEAVLPLAGIGFALGWPIEWLVQRFPLGQGTAPSTRRRWVAAGLTAGLFAALALRIGFEAQLVPALVLTALIVPASLIDLNHRIIPDV
Ga0247818_113507311	3300028589	Soil	MEAVLPLAGIGFALGWPIEWLVQRFPLGQGTAPSTRRRWIAAALTAGLFAALALQIGFEAQLVPALV
Ga0307307_101117502	3300028718	Soil	VADSYRMEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLVAGLMAGLFAALTLQIGIEPQLAPALLLTALIV
Ga0307318_101857092	3300028744	Soil	MEFVLPFAGAGFALGWPMEWVIQRFPTGKGTAPSARRKWIVAGITAALFAALTFHIGLHPKLAPALLLTALVVPAAAIDLKHRIIPDAINLPGAVLVY
Ga0307284_104583471	3300028799	Soil	METVLPLAGAGFALGWPMEWVIQRFPSGEGTAPSARRRWIVAAITAALFAALTVRIGFHPRLAPALLLTALVV
Ga0307503_108416612	3300028802	Soil	VADSYRMEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLVAGLMAGLFAALTLQIGIEPQLAPALLLTALI
Ga0307281_102691811	3300028803	Soil	MEFVLPLAGAGFALGWPMEWLIQRFPTGEGTAPSARRRWIVAGITAALFAVLTVHIGLQPELAPALLLTALVVPASAIDLKLRIIP
Ga0247825_107801391	3300028812	Soil	MEFVLPFAGAGFALGWPMEWVIQRFPTGEGTAPSSRRKWVVAGITAALFAVLTFHIGLQPRLAPALLLTALVVPASAIDLK
Ga0307312_107898662	3300028828	Soil	METVLPLAGAGFALGWPMEWVIQRFPSGEGTAPSARRRWIVAAITAALFAALTVRIGFHPRLAPALLLTALVVPASAIDLKQTT
Ga0307506_100434682	3300031366	Soil	MEFAVPVVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLMAGLFAALTLQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAVLVF
Ga0307469_113122191	3300031720	Hardwood Forest Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLMAGLTAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYPGAV
Ga0307468_1007012002	3300031740	Hardwood Forest Soil	MEAVLPLAGFGFALGWPLEWVIQRFPQGVGTAPSSRRRWIVAGITALLFALEAISIGIVPELLPALLLTALVVPAAAIDLEHRI
Ga0310900_113692321	3300031908	Soil	MELVLPFAGAGFALGWPMEWVIQQFPTGEGTAPSSQRKWVVAGITAALFAVLTFHIGLQPRLAPALLLTALVVPASAIDLRHRIIPDAINLPGAVLVY
Ga0308175_1026873031	3300031938	Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGKGTAPSAQRKWVVAGVTAGLFAALAYHIGLHPRLVPALLLTALVVPASAIDLKHRIIPDAINLPGA
Ga0308176_119012271	3300031996	Soil	MVGFALGWPIEWLIQRFPLGEGTPPSVRRRWLVAGLMAGLFAALTWQIGIEPQLAPALLLTALIVPASVIDINHRIIPNLINYP
Ga0318563_105903742	3300032009	Soil	MEFALPVAGVGFALGWPIEWVIQRFPLGHGTPPSIRRRWVVAGMTALLFALLTVVIGLHPRLIPALILTALVVPASAIDLNHRIIPDRINLPG
Ga0306920_1043774081	3300032261	Soil	METVLPLAGFGFVLGWPLERLIQRFPLGSGTAPSSRRRWLVAGVMALLFAALAVTIGPHPQLAP
Ga0335069_121958461	3300032893	Soil	MESVLPLAGAGFALGWPLEWVIQQFPRDRRTAPSHRRRLAVALLMAALFAVEAVAIGFTRELAPALLLTALIVPAAVIDLGHRIIP
Ga0326730_10999911	3300033500	Peat Soil	MEFVLPFAGAGFALGWPMEWVIQRFPTGKGTAPSARRKWIVAGITAALFAALTLHIGLNPELAPALLLTALVVPAAA
Ga0247830_106297051	3300033551	Soil	MEIALPLAGAGFALGWPMEWLIQRFPTGTGTAPSARRKWVVAGVTAALFAVLAYHIGLHPRLVPALLLTALVVPASV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087670

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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